Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  23  of  211  ( 25234 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6165906--6165936
11
2.9
11
95
4
55
32
0
0
67
0.91
6178295--6178321
3
9.0
3
100
0
54
33
0
0
66
0.92
6186937--6187147
101
2.1
100
89
7
322
30
6
10
52
1.61
6186937--6187133
97
2.0
97
89
7
299
30
5
11
52
1.59
6191807--6191832
5
5.2
5
100
0
52
80
19
0
0
0.71
6192439--6192475
17
2.2
17
90
0
56
27
2
18
51
1.60
6193156--6193216
26
2.4
26
81
8
63
65
8
1
24
1.29
6193167--6193216
26
2.0
25
84
4
64
66
10
2
22
1.32
6193248--6193314
9
7.4
9
89
0
107
23
11
23
40
1.88
6193474--6193498
12
2.1
12
100
0
50
16
24
36
24
1.94
6193865--6194092
46
5.0
45
88
2
321
37
9
24
28
1.86
6193865--6194092
92
2.5
92
91
0
357
37
9
24
28
1.86
6199027--6199082
22
2.5
22
88
0
85
44
8
25
21
1.81
6207764--6207813
3
16.7
3
95
0
91
68
2
0
30
1.01
6212244--6212292
24
2.0
24
100
0
98
16
4
30
48
1.64
6217867--6217916
3
16.7
3
95
0
91
68
2
0
30
1.01
6222344--6222392
24
2.0
24
100
0
98
16
4
30
48
1.64
6223876--6223925
17
2.7
20
78
18
70
10
0
44
46
1.37
6228505--6228554
17
2.7
20
78
18
70
10
0
44
46
1.37
6237506--6237554
24
2.0
24
100
0
98
16
4
30
48
1.64
6241144--6241185
16
2.5
17
84
7
59
47
2
4
45
1.36
6247209--6247295
33
2.6
33
87
0
129
41
3
35
19
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6247235--6247287
15
3.3
15
73
14
52
39
3
35
20
1.71
6249032--6249081
17
2.7
20
78
18
70
10
0
44
46
1.37
6253670--6253719
17
2.7
20
78
18
70
10
0
44
46
1.37
6259249--6259315
31
2.3
27
76
14
62
41
8
8
40
1.68
6260874--6260906
11
3.1
11
91
4
50
30
0
9
60
1.27
6261366--6261405
19
2.0
20
90
4
64
22
0
7
70
1.12
6264505--6264536
3
10.7
3
100
0
64
68
0
0
31
0.90
6266193--6266632
44
10.2
43
72
6
241
26
22
19
31
1.97
6266193--6266520
87
3.8
87
83
4
340
27
20
20
32
1.97
6266270--6266521
131
1.9
131
80
6
287
27
21
19
31
1.98
6267727--6267773
21
2.2
21
88
0
67
25
38
10
25
1.88
6271368--6271416
19
2.5
20
80
6
57
40
12
20
26
1.87
6273800--6273832
3
11.0
3
100
0
66
66
0
0
33
0.92
6275993--6276028
17
2.1
17
90
10
56
50
0
5
44
1.25
6281128--6281165
19
2.1
18
85
14
51
73
0
13
13
1.09
6283893--6283953
5
12.4
5
78
15
65
57
0
0
42
0.98
6287770--6287803
17
2.0
17
88
11
52
47
0
5
47
1.26
6294339--6294433
22
4.1
22
73
8
55
48
2
0
49
1.13
6295440--6295517
15
5.2
15
70
11
70
42
7
23
26
1.81
6295434--6295527
30
3.1
30
95
1
161
41
6
25
26
1.79
6300097--6300174
15
5.2
15
70
11
70
42
7
23
26
1.81
6300091--6300184
30
3.1
30
95
1
161
41
6
25
26
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6306662--6306740
30
2.6
30
79
0
86
35
26
11
26
1.90
6308917--6309238
162
2.0
161
96
0
590
25
14
15
44
1.84
6309921--6310048
24
5.3
24
90
0
175
31
30
28
10
1.90
6312456--6312489
10
3.3
10
84
8
50
55
0
14
29
1.40
6314663--6314724
28
2.2
28
97
2
115
22
24
19
33
1.97
6325043--6325083
21
2.0
21
90
0
64
19
29
21
29
1.98
6328945--6329295
159
2.2
159
92
2
589
21
15
27
35
1.94
6328948--6329362
159
2.6
158
86
3
573
22
16
27
33
1.96
6328948--6329442
159
3.1
158
82
4
548
22
16
27
33
1.96
6343411--6343490
24
3.3
24
85
0
115
27
35
17
20
1.95
6347480--6347521
6
7.0
6
97
0
75
19
16
47
16
1.83
6349405--6349451
24
1.9
25
86
4
69
59
2
0
38
1.09
6349652--6349696
22
2.0
22
86
0
63
48
11
28
11
1.73
6354711--6354743
16
2.0
17
88
5
50
39
24
6
30
1.79
6356762--6356832
21
3.5
21
74
22
62
60
2
5
30
1.34
6356992--6357031
2
20.0
2
100
0
80
50
0
0
50
1.00
6361930--6361961
15
2.1
16
94
5
57
59
0
9
31
1.29
6366813--6366853
22
1.9
22
85
5
57
31
4
4
58
1.40
6369049--6369077
13
2.1
14
93
6
51
58
6
0
34
1.25
6383627--6383667
21
2.0
21
90
0
64
29
21
29
19
1.98
6394781--6394841
30
1.9
33
87
9
92
59
4
1
34
1.29
6396321--6396473
59
2.6
59
81
6
148
43
10
3
41
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6414966--6415024
16
3.8
16
73
13
68
35
11
22
30
1.90
6414948--6415031
31
2.6
31
81
3
105
39
9
20
30
1.84
6415203--6415302
10
11.1
9
69
19
50
39
1
5
55
1.29
6415235--6415301
35
1.9
34
85
8
91
40
0
5
53
1.25
6415205--6415298
47
2.1
45
84
9
120
37
1
5
56
1.29
6415240--6415317
19
4.3
18
75
15
65
35
0
6
57
1.24
6415698--6415811
59
1.9
59
94
0
201
38
9
16
35
1.82
6420649--6420703
9
5.6
9
81
16
56
83
1
3
10
0.84
6420648--6420685
15
2.6
14
88
12
58
89
2
0
7
0.57
6420645--6420696
22
2.3
23
80
12
63
82
1
3
11
0.88
6421054--6421249
108
1.8
108
89
2
313
25
16
10
47
1.78
6421706--6422534
87
9.5
87
87
1
1018
28
22
23
24
1.99
6421706--6422534
175
4.7
175
84
1
1038
28
22
23
24
1.99
6421706--6422534
262
3.2
261
82
2
1047
28
22
23
24
1.99
6422698--6423018
40
7.8
40
79
11
360
31
22
22
23
1.98
6422686--6423063
84
4.5
84
94
1
643
33
22
21
22
1.98
6422686--6423063
167
2.3
167
93
0
639
33
22
21
22
1.98
6429033--6429112
41
1.9
42
97
2
137
53
5
6
35
1.48
6430126--6430170
17
2.7
16
80
10
54
51
0
0
48
1.00
6432341--6432373
3
11.3
3
93
6
59
69
0
0
30
0.88
6434448--6434480
14
2.5
14
90
9
52
33
21
3
42
1.68
6434900--6434946
24
2.0
24
84
16
62
51
14
2
31
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6435662--6435700
13
2.9
13
84
3
51
25
0
2
71
0.98
6436599--6436647
16
3.1
16
75
21
50
22
6
0
71
1.08
6436974--6437117
72
2.0
72
89
2
218
29
18
17
35
1.93
6437747--6437782
18
1.9
19
88
5
56
33
27
0
38
1.57
6438137--6438190
5
10.8
5
100
0
108
59
0
0
40
0.98
6445844--6445901
20
2.8
20
80
15
64
48
0
1
50
1.11
6447518--6447542
13
1.9
13
100
0
50
64
12
8
16
1.49
6455298--6455333
10
3.3
11
88
11
56
63
8
0
27
1.23
6455298--6455344
22
2.1
23
88
4
69
63
8
0
27
1.23
6455298--6455344
12
4.0
12
83
13
53
63
8
0
27
1.23
6455416--6455486
30
2.4
29
82
17
85
64
4
2
28
1.26
6455956--6456176
10
23.8
9
67
16
96
35
2
2
59
1.24
6455956--6456176
19
11.9
18
66
18
96
35
2
2
59
1.24
6456032--6456165
9
15.0
9
75
15
73
36
1
2
59
1.19
6456035--6456176
27
5.2
26
73
18
87
35
2
2
60
1.20
6464962--6465036
37
2.0
37
100
0
150
18
26
17
37
1.93
6465981--6466019
17
2.4
16
83
16
53
43
0
2
53
1.14
6465981--6466019
16
2.4
17
82
8
53
43
0
2
53
1.14
6466099--6466229
19
6.6
19
65
22
72
33
0
11
54
1.36
6466200--6466283
27
3.1
27
96
0
150
35
0
11
52
1.38
6466169--6466283
19
6.1
19
71
18
89
33
0
12
53
1.38
6466299--6466344
21
2.2
21
88
7
67
36
0
8
54
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6466298--6466350
21
2.3
23
75
21
58
33
0
9
56
1.32
6466479--6466560
38
2.2
38
95
0
146
54
2
2
40
1.26
6466597--6466638
16
2.7
15
85
7
57
38
2
2
57
1.25
6466707--6466769
21
3.0
21
80
2
72
58
12
0
28
1.35
6466934--6466968
11
3.3
11
84
8
54
65
0
0
34
0.93
6470437--6470496
30
2.0
30
93
0
102
36
26
6
30
1.82
6471487--6471539
21
2.5
21
75
9
54
18
16
43
20
1.88
6480655--6480788
63
2.1
63
83
2
162
29
20
26
23
1.99
6483764--6483814
17
3.0
17
83
11
68
54
0
1
43
1.11
6483935--6483974
21
1.9
21
84
0
53
20
2
10
67
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211