genome.fa.s14.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  198  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58323669--58323716	21	2.3	21	82	10	62	31	2	37	29	1.69
58323680--58323741	21	2.8	22	77	18	67	32	1	33	32	1.68
58325782--58325807	13	2.0	13	100	0	52	30	15	0	53	1.42
58328084--58328356	43	6.3	43	85	0	330	22	16	29	31	1.96
58331102--58331134	2	16.5	2	100	0	66	51	0	0	48	1.00
58331249--58331290	21	2.0	22	90	4	68	59	7	2	30	1.37
58332197--58332233	20	1.9	20	88	5	58	48	2	0	48	1.15
58354495--58354559	30	2.2	30	86	10	89	55	3	4	36	1.36
58360100--58360306	106	2.0	106	86	3	292	24	15	15	43	1.87
58375291--58375319	13	2.1	14	93	6	51	65	0	0	34	0.93
58382203--58382242	13	3.1	13	92	0	62	30	7	32	30	1.85
58386039--58386082	8	5.6	8	91	5	72	72	0	2	25	0.96
58394466--58394552	3	28.0	3	74	15	70	60	2	4	32	1.29
58395315--58395341	14	1.9	14	100	0	54	74	0	3	22	0.98
58396139--58396932	44	18.2	44	76	6	643	23	23	22	31	1.98
58396139--58396904	175	4.4	173	82	5	753	23	22	22	31	1.98
58396140--58396932	131	6.1	131	82	4	719	23	23	22	31	1.99
58396896--58397704	44	18.2	44	70	10	285	27	23	20	29	1.99
58396896--58397531	44	14.3	46	72	11	360	28	23	19	28	1.98
58397056--58397315	134	2.0	135	81	3	314	28	24	20	26	1.99
58397315--58397621	134	2.3	134	91	1	481	26	24	20	28	1.99
58396900--58397603	358	2.0	353	85	5	970	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58397098--58397574	224	2.1	222	86	3	670	28	24	19	27	1.99
58398983--58399039	27	2.1	28	84	15	75	19	15	0	64	1.28
58398986--58399036	7	7.6	7	78	8	52	15	13	0	70	1.17
58398986--58399035	20	2.5	20	87	9	68	16	14	0	70	1.18
58400016--58400083	12	5.8	12	72	6	59	13	7	5	73	1.23
58400014--58400059	21	2.2	20	84	7	56	13	6	2	78	1.04
58404834--58404926	3	30.0	3	76	14	82	61	2	4	32	1.27
58405652--58405678	14	1.9	14	100	0	54	74	0	3	22	0.98
58406955--58406995	19	2.2	19	86	8	57	60	7	7	24	1.48
58406955--58406996	20	2.2	19	86	4	57	61	7	7	23	1.47
58408526--58408590	16	4.1	16	89	0	103	40	4	33	21	1.74
58408804--58409028	120	1.9	121	98	0	434	49	4	1	44	1.32
58409135--58409167	14	2.3	15	89	5	50	75	6	0	18	1.00
58409514--58409663	59	2.6	58	85	3	212	37	22	18	21	1.94
58412793--58412830	13	2.8	13	82	17	51	68	0	0	31	0.90
58412793--58412829	18	2.1	18	90	10	58	67	0	0	32	0.91
58412793--58412839	16	2.9	17	81	15	64	65	0	0	34	0.93
58439962--58439996	17	2.1	17	100	0	70	40	11	17	31	1.85
58441876--58441913	12	3.2	12	81	11	51	0	2	18	78	0.86
58443047--58443087	20	2.0	22	85	9	59	36	4	2	56	1.34
58444734--58444857	2	65.0	2	77	9	125	42	0	56	0	1.05
58447144--58447214	27	2.6	27	81	0	88	25	19	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58449360--58449421	29	2.2	28	82	2	70	24	14	16	45	1.84
58449751--58449951	105	1.9	106	91	1	332	31	13	17	36	1.90
58453077--58453101	10	2.5	10	100	0	50	48	0	8	44	1.32
58453150--58453340	29	6.3	29	86	10	274	29	0	26	43	1.59
58453153--58453240	38	2.4	37	87	9	128	25	0	28	46	1.53
58453168--58453240	38	1.9	38	94	2	130	26	0	26	47	1.52
58453344--58453528	25	7.7	25	66	22	83	44	13	2	38	1.58
58453346--58453530	71	2.6	71	95	2	327	45	13	2	38	1.58
58454616--58454640	7	3.6	7	100	0	50	60	12	0	28	1.32
58455594--58455649	22	2.5	23	82	2	69	51	1	1	44	1.22
58455625--58455664	16	2.5	16	91	0	62	47	2	7	42	1.45
58455681--58455844	59	2.8	59	97	0	310	40	6	9	43	1.61
58455911--58455954	24	1.9	24	90	9	74	61	2	0	36	1.09
58456402--58456465	29	2.2	28	88	2	92	64	0	0	35	0.94
58456411--58456448	20	1.9	20	84	10	51	63	0	0	36	0.95
58456559--58456583	12	2.1	12	100	0	50	40	0	32	28	1.57
58458196--58458220	9	2.8	9	100	0	50	32	12	12	44	1.78
58458211--58458237	14	1.9	14	100	0	54	33	7	14	44	1.73
58458538--58458601	22	3.1	21	80	13	71	37	1	4	56	1.30
58458545--58458615	19	3.6	19	75	14	54	35	1	2	60	1.20
58461282--58461479	102	1.9	102	98	0	387	26	13	31	27	1.94
58462758--58462811	23	2.3	24	78	15	60	44	3	3	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58465651--58465731	41	2.0	41	95	0	144	33	14	22	29	1.94
58465706--58465760	28	2.0	28	92	7	94	30	10	29	29	1.91
58465669--58465802	69	1.9	69	92	0	223	32	14	23	28	1.95
58465734--58465861	41	3.1	41	85	0	157	31	16	24	28	1.96
58476993--58477034	2	21.0	2	100	0	84	0	0	50	50	1.00
58479326--58479578	46	5.6	46	94	2	433	32	15	23	28	1.95
58479326--58479578	91	2.8	91	94	1	438	32	15	23	28	1.95
58479326--58479578	137	1.9	134	94	2	443	32	15	23	28	1.95
58492207--58492258	3	17.0	3	77	18	54	32	1	3	61	1.25
58492207--58492243	14	2.6	14	91	0	56	29	2	5	62	1.31
58492179--58492258	22	3.7	22	77	12	76	31	2	5	61	1.31
58492207--58492254	11	3.8	13	84	15	50	33	2	4	60	1.27
58492204--58492270	8	7.8	8	77	22	57	32	4	2	59	1.32
58494233--58494292	30	2.0	30	83	3	75	41	0	38	20	1.52
58494561--58494591	9	3.4	9	90	0	53	38	22	12	25	1.90
58498860--58498912	24	2.2	25	83	10	65	15	30	20	33	1.93
58509632--58509736	25	4.2	25	77	7	97	20	23	21	33	1.97
58515331--58515363	7	4.9	7	96	3	59	0	54	0	45	0.99
58516797--58516828	16	2.1	15	94	5	55	65	6	0	28	1.16
58521493--58521549	28	2.0	28	96	0	105	43	28	10	17	1.82
58529190--58529241	7	7.4	7	89	10	72	82	1	0	15	0.75
58529204--58529240	6	5.8	6	93	6	56	86	0	0	13	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58529200--58529240	13	3.2	13	86	13	66	85	0	0	14	0.60
58529190--58529240	26	1.9	25	92	8	75	82	1	0	15	0.76
58529651--58529683	3	11.0	3	100	0	66	33	33	0	33	1.58
58538704--58538746	18	2.4	18	88	0	59	46	0	2	51	1.13
58542306--58542331	5	5.2	5	100	0	52	38	23	0	38	1.55
58545520--58545556	18	2.1	18	89	0	56	21	5	13	59	1.54
58547810--58547840	16	2.0	15	93	6	53	12	9	12	64	1.50
58551208--58551238	3	10.3	3	100	0	62	32	0	0	67	0.91
58552441--58552505	32	2.0	32	90	0	103	40	9	18	32	1.82
58556540--58556860	159	2.0	159	100	0	642	30	22	19	27	1.98
58564428--58564500	35	2.1	35	84	5	94	41	8	0	50	1.32
58576181--58576539	50	7.2	50	68	6	235	30	20	24	24	1.99
58576178--58576544	199	1.8	199	92	1	628	31	20	24	23	1.98
58576176--58576562	100	3.9	100	91	1	598	30	20	24	24	1.99
58578221--58578262	21	2.0	21	85	4	57	14	7	7	71	1.29
58578454--58578484	15	2.1	15	93	0	53	38	3	0	58	1.15
58579699--58579743	23	1.9	23	82	13	56	15	8	40	35	1.79
58579799--58580029	123	1.9	123	86	5	322	31	13	23	31	1.93
58583215--58583604	28	13.1	27	73	17	208	30	0	24	45	1.57
58583253--58583278	12	2.2	12	100	0	52	15	0	38	46	1.46
58583215--58583727	91	5.7	89	80	12	482	30	0	23	45	1.56
58583278--58583749	149	3.2	148	88	6	657	30	0	23	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58583265--58583714	28	15.5	28	76	14	423	30	0	23	45	1.56
58583574--58583732	28	5.2	32	78	17	121	31	0	21	47	1.51
58586119--58586160	22	1.9	22	90	0	66	33	0	33	33	1.58
58586110--58586212	52	2.0	51	83	9	129	34	0	32	33	1.58
58586162--58586245	22	3.8	22	87	3	116	41	0	27	30	1.56
58593691--58593724	9	3.8	9	92	0	59	73	0	14	11	1.10
58594106--58594260	78	2.0	77	94	3	276	24	10	26	38	1.87
58598214--58598243	3	10.0	3	100	0	60	33	0	33	33	1.58
58599323--58599358	5	7.2	5	100	0	72	41	0	58	0	0.98
58599918--58599948	3	10.3	3	100	0	62	64	0	35	0	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211