genome.fa.s14.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  114  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32105347--32105377	9	3.4	9	90	0	53	25	12	22	38	1.90
32105431--32105467	9	4.1	9	92	0	65	45	13	10	29	1.77
32124462--32124514	20	2.8	19	78	18	58	39	1	1	56	1.21
32128434--32128485	26	2.0	26	88	7	79	32	7	17	42	1.77
32135610--32135736	50	2.5	51	82	6	152	27	28	15	28	1.96
32136161--32136193	17	1.9	17	100	0	66	24	18	6	51	1.68
32139175--32139300	50	2.5	50	88	8	177	26	30	15	27	1.96
32143983--32144083	40	2.5	40	82	4	116	35	21	20	21	1.96
32143977--32144108	40	3.3	40	76	5	99	35	21	21	21	1.96
32144143--32144343	41	4.9	41	90	0	312	22	21	27	27	1.99
32145009--32145060	14	3.6	14	78	2	59	23	0	38	38	1.55
32145041--32145096	21	2.6	22	86	8	80	19	0	42	37	1.52
32144817--32145351	290	1.8	290	90	2	869	28	2	26	42	1.66
32145301--32145332	15	2.1	15	94	0	55	28	0	31	40	1.57
32145294--32145354	22	2.8	22	79	0	77	29	0	31	39	1.57
32145895--32145937	23	2.0	22	86	9	61	30	39	2	27	1.69
32149512--32149706	43	4.6	43	82	8	148	25	17	24	32	1.97
32149565--32149772	85	2.4	85	81	5	233	24	16	25	33	1.96
32149546--32149772	43	5.3	43	81	8	239	23	15	25	34	1.95
32162245--32162291	24	2.0	24	95	0	85	46	8	14	29	1.74
32164318--32164501	92	2.0	90	92	2	305	40	10	12	36	1.77
32167339--32167386	21	2.3	21	96	0	87	29	29	29	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32167339--32167397	21	2.8	21	87	5	57	30	27	28	13	1.94
32175015--32175080	14	4.5	15	70	24	52	53	13	4	28	1.60
32175015--32175087	15	5.2	13	74	22	60	53	13	4	28	1.58
32175028--32175175	62	2.5	58	78	11	144	53	10	4	31	1.55
32175237--32175316	36	2.2	38	95	4	146	63	11	0	25	1.27
32175690--32175735	19	2.4	18	78	7	56	71	4	6	17	1.24
32178620--32178680	22	2.8	22	97	0	113	40	21	13	24	1.88
32179017--32179066	21	2.5	21	87	9	70	72	0	0	28	0.86
32180030--32180073	16	2.9	16	86	6	56	22	6	6	63	1.43
32184007--32184051	23	2.0	23	100	0	90	46	13	0	40	1.43
32184009--32184087	13	6.5	13	77	16	98	48	13	0	37	1.43
32184009--32184087	36	2.2	36	100	0	158	48	13	0	37	1.43
32184045--32184096	23	2.3	23	96	0	95	50	13	0	36	1.42
32191937--32191970	13	2.5	13	90	4	50	76	0	20	2	0.92
32192069--32192111	13	3.5	13	75	18	56	48	13	0	37	1.43
32192069--32192119	23	2.3	23	96	3	95	49	11	0	39	1.40
32194639--32194734	19	4.9	19	89	5	147	38	9	15	36	1.80
32194639--32194741	40	2.7	38	86	8	147	38	8	16	35	1.80
32194673--32194757	21	4.0	22	79	14	81	37	7	16	38	1.76
32194723--32194767	23	2.0	23	86	4	65	33	4	15	46	1.66
32195900--32195939	19	2.0	20	85	4	55	32	5	10	52	1.56
32196183--32196377	98	2.0	98	96	0	363	28	10	24	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32199511--32199551	2	20.5	2	100	0	82	0	48	0	51	1.00
32202207--32202422	100	2.1	101	86	0	299	31	13	24	29	1.94
32205123--32205163	17	2.4	17	95	0	73	19	36	31	12	1.89
32205123--32205171	17	2.9	17	90	0	71	20	32	32	14	1.92
32205742--32205772	16	1.9	16	93	0	53	74	0	0	25	0.82
32209078--32209109	17	1.9	16	93	6	55	75	3	0	21	0.95
32209529--32209755	101	2.2	101	86	1	321	31	16	24	27	1.96
32209633--32209711	35	2.3	35	82	8	92	32	15	22	29	1.95
32209666--32209743	33	2.4	32	80	6	84	35	17	20	25	1.95
32215588--32215686	49	2.0	49	100	0	198	48	2	6	43	1.39
32221820--32221856	18	2.1	18	94	0	65	24	27	8	40	1.83
32222287--32222334	25	1.9	25	100	0	96	45	0	14	39	1.45
32222395--32222887	23	21.8	24	79	14	378	48	24	0	26	1.57
32222391--32222887	44	11.0	44	81	8	454	47	24	0	26	1.57
32222391--32222887	67	7.3	67	80	10	505	47	24	0	26	1.57
32222769--32222888	21	5.5	22	89	6	165	49	29	0	21	1.50
32222769--32222864	43	2.2	43	94	0	174	47	31	0	20	1.50
32222892--32223131	116	2.1	116	91	1	383	40	8	7	44	1.63
32226146--32226522	125	3.0	125	91	3	582	32	22	14	29	1.94
32228664--32228692	9	3.0	10	90	10	51	82	0	0	17	0.66
32228664--32228716	19	2.8	19	79	0	61	75	1	0	22	0.90
32228667--32228751	28	3.0	29	78	11	88	67	2	1	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32228769--32228806	19	2.0	19	90	10	60	63	5	5	26	1.37
32229051--32229105	10	5.7	10	77	14	62	29	3	1	65	1.20
32236805--32236851	22	2.1	23	84	4	60	46	6	17	29	1.72
32246731--32247171	236	1.9	235	89	1	695	34	16	22	26	1.95
32249979--32250182	108	1.9	108	88	4	313	50	18	6	25	1.71
32252101--32252155	27	2.0	27	96	0	101	32	23	9	34	1.86
32253060--32253096	13	2.8	13	95	0	65	18	32	21	27	1.97
32254234--32254260	14	1.9	14	100	0	54	85	0	0	14	0.61
32275252--32275291	16	2.5	16	83	0	53	42	7	22	27	1.80
32275435--32275604	56	2.8	60	82	11	197	53	3	1	41	1.25
32279047--32279084	13	2.9	13	96	0	67	23	21	13	42	1.88
32284840--32284865	12	2.2	12	100	0	52	61	15	15	7	1.55
32286224--32286287	33	1.9	33	84	6	85	21	23	25	29	1.99
32287762--32287826	32	1.9	32	84	12	85	55	12	7	24	1.63
32290524--32290604	31	2.6	31	92	1	128	40	1	0	58	1.06
32290524--32290581	9	5.8	10	72	22	50	41	1	0	56	1.09
32291675--32291760	43	2.0	43	93	0	145	45	11	10	32	1.75
32293052--32293095	20	2.2	20	88	4	63	22	0	2	75	0.92
32295117--32295171	28	1.9	29	82	10	69	34	7	30	27	1.84
32316211--32316259	11	4.9	10	79	16	57	59	12	22	6	1.55
32316211--32316259	20	2.4	21	80	16	59	59	12	22	6	1.55
32316373--32316417	17	2.6	17	89	0	63	24	26	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32316562--32316598	9	4.1	9	85	0	56	48	13	8	29	1.71
32316647--32316707	30	2.0	31	87	9	90	19	40	0	39	1.52
32316815--32316873	30	2.0	30	83	6	75	20	37	0	42	1.52
32319300--32319348	20	2.5	20	93	0	80	48	8	12	30	1.69
32324172--32324202	7	4.4	7	100	0	62	54	16	0	29	1.42
32324163--32324202	21	1.9	21	89	0	62	52	15	0	32	1.43
32324007--32324393	191	2.0	191	99	0	765	34	17	19	28	1.94
32324363--32324393	7	4.4	7	100	0	62	54	16	0	29	1.42
32324354--32324393	21	1.9	21	89	0	62	52	15	0	32	1.43
32324431--32324459	3	9.7	3	100	0	58	31	0	0	68	0.89
32325210--32325244	17	2.1	17	94	0	61	60	5	28	5	1.43
32325169--32325285	58	2.0	58	88	0	171	44	10	28	17	1.81
32325560--32325584	6	4.2	6	100	0	50	0	16	0	84	0.63
32333238--32333415	27	6.6	27	85	3	205	29	29	14	26	1.95
32333238--32333415	54	3.3	54	85	3	232	29	29	14	26	1.95
32333259--32333414	81	1.9	82	88	3	235	29	29	14	26	1.95
32339750--32339793	20	2.1	21	84	12	56	52	13	25	9	1.70
32342178--32342221	13	3.4	13	84	9	63	81	9	0	9	0.87
32342175--32342232	26	2.3	25	88	5	89	82	6	3	6	0.93
32351229--32351286	20	2.9	19	78	16	64	34	12	27	25	1.91
32351227--32351292	20	3.3	19	72	8	60	39	10	25	24	1.87
32352418--32352462	24	1.9	23	86	13	65	71	2	17	8	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32352509--32352544	18	1.9	19	88	5	56	52	0	22	25	1.47
32356920--32356962	8	5.5	8	78	15	54	25	0	2	72	0.97
32356922--32356963	15	2.9	15	76	16	52	28	0	2	69	1.01
32360538--32360576	19	2.0	21	90	10	64	58	0	10	30	1.31
32361310--32361346	18	2.0	20	84	10	51	70	5	16	8	1.30
32375170--32375376	106	2.0	106	86	3	292	24	15	16	42	1.87
32377049--32377256	91	2.3	91	88	2	301	45	3	3	46	1.39
32377272--32377567	120	2.5	120	92	2	499	42	2	4	49	1.37
32377395--32377446	15	3.6	15	80	12	56	44	0	1	53	1.11
32377511--32377545	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211