genome.fa.s14.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  199  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58604070--58604382	156	2.0	156	93	1	529	39	14	12	33	1.84
58604392--58604453	12	5.3	11	75	12	61	33	17	4	43	1.71
58605088--58605137	16	3.2	16	94	5	93	34	24	6	36	1.80
58615428--58615478	23	2.2	23	85	0	75	45	21	7	25	1.79
58626490--58626527	18	2.1	18	85	14	51	15	23	2	57	1.51
58627563--58627593	14	2.2	14	94	0	53	48	12	0	38	1.42
58629496--58629525	11	2.6	11	94	5	51	30	13	30	26	1.94
58631990--58632065	12	6.1	12	70	22	50	75	3	2	18	1.08
58631990--58632065	25	3.0	25	75	22	70	75	3	2	18	1.08
58639297--58639327	14	2.2	14	94	0	53	48	12	0	38	1.42
58640149--58640354	30	6.9	30	90	0	304	14	30	35	18	1.91
58640230--58640282	17	3.4	17	65	20	51	13	26	37	22	1.91
58641031--58641074	22	2.0	23	86	8	65	40	20	4	34	1.73
58641030--58641077	21	2.2	21	82	13	62	41	18	4	35	1.70
58652692--58652738	17	2.8	16	78	15	51	14	6	0	78	0.93
58652690--58652743	26	2.1	26	83	13	67	14	5	0	79	0.90
58660409--58660482	20	3.7	20	90	0	103	39	22	28	9	1.85
58665268--58665355	27	3.3	27	95	1	160	39	6	0	53	1.28
58665415--58665466	27	1.9	27	92	0	86	28	21	32	17	1.96
58666030--58666138	18	5.9	18	76	4	110	38	11	0	49	1.40
58666022--58666146	37	3.4	37	97	0	232	37	12	0	49	1.41
58666144--58666179	18	2.0	18	88	0	54	47	0	11	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58666607--58666674	27	2.5	27	92	4	111	50	0	13	36	1.42
58666871--58666975	30	3.5	30	72	10	88	39	13	12	35	1.82
58669810--58669849	15	2.7	15	84	0	53	17	0	7	75	1.03
58673858--58673885	9	3.1	9	100	0	56	78	0	0	21	0.75
58674550--58674714	45	3.7	45	83	1	197	25	23	21	29	1.99
58674550--58674714	89	1.8	90	85	5	235	25	23	21	29	1.99
58674859--58675121	50	5.3	50	77	1	260	28	19	18	33	1.95
58674859--58675155	100	3.0	99	85	2	405	28	20	18	32	1.96
58674859--58675156	50	6.0	50	76	2	258	28	20	19	32	1.96
58675036--58675328	136	2.2	136	86	4	421	29	20	20	30	1.97
58675272--58675341	36	1.9	36	88	5	106	31	24	18	25	1.98
58675308--58675454	51	2.9	51	76	8	154	27	26	17	28	1.97
58675433--58675475	21	2.0	21	90	0	68	23	32	4	39	1.75
58675330--58675555	123	1.8	123	81	1	283	28	26	15	30	1.96
58682167--58682201	12	2.9	12	86	0	52	17	22	11	48	1.79
58687830--58687897	30	2.2	32	79	10	79	50	2	10	36	1.52
58694696--58694737	22	2.0	21	85	4	57	73	4	0	21	1.01
58694680--58694758	26	3.2	24	77	18	83	73	2	3	20	1.11
58706516--58706549	16	2.1	16	88	5	50	47	0	5	47	1.26
58707994--58708043	6	8.2	6	77	4	55	18	22	14	46	1.84
58714023--58714056	16	2.1	16	88	5	50	47	0	5	47	1.26
58714464--58714505	7	6.1	7	91	5	59	21	0	35	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58714464--58714505	14	3.1	14	93	3	68	21	0	35	42	1.53
58717271--58717313	11	3.8	11	80	17	52	62	4	2	30	1.28
58717267--58717310	23	1.9	23	90	0	70	59	6	2	31	1.36
58720944--58720983	21	1.9	21	89	0	62	37	0	15	47	1.45
58722933--58722980	17	2.8	17	75	6	53	64	0	0	35	0.94
58723179--58723221	18	2.4	18	77	14	52	74	0	2	23	0.93
58725646--58725950	152	2.0	152	100	0	610	39	18	9	33	1.82
58729825--58729937	39	3.0	38	80	6	113	37	21	22	19	1.95
58738800--58738839	19	2.2	19	86	4	55	72	2	0	25	0.97
58742563--58742626	13	5.4	13	71	27	61	39	0	10	50	1.38
58742560--58742626	23	2.9	23	90	0	107	40	0	10	49	1.37
58745514--58745556	13	3.5	13	78	18	56	37	0	13	48	1.43
58745512--58745556	23	2.0	23	95	0	81	37	0	13	48	1.42
58751414--58751526	29	3.8	30	73	16	83	40	10	0	47	1.44
58752365--58752464	49	2.1	49	86	1	139	44	8	16	32	1.76
58753491--58753535	3	15.0	3	90	9	74	66	2	31	0	1.04
58764415--58764483	8	8.2	8	69	15	50	36	0	1	62	1.04
58764417--58764451	18	1.9	18	88	0	52	42	0	0	57	0.99
58764415--58764483	26	2.7	26	76	10	79	36	0	1	62	1.04
58764541--58764585	21	2.1	21	87	0	63	68	6	4	20	1.29
58764793--58764836	22	2.0	22	82	8	54	40	13	18	27	1.88
58768244--58768304	23	2.7	22	80	14	63	26	19	14	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58771429--58771472	21	2.0	23	86	8	65	61	0	4	34	1.16
58772041--58772208	83	2.0	83	95	0	300	33	23	8	33	1.86
58777561--58777612	21	2.5	21	79	14	63	34	0	5	59	1.21
58780433--58780615	50	3.8	48	85	7	228	24	18	33	22	1.97
58784319--58784364	14	3.5	13	88	8	67	0	23	0	76	0.79
58788214--58788240	14	1.9	14	100	0	54	66	14	0	18	1.25
58793543--58793584	3	14.0	3	100	0	84	33	0	0	66	0.92
58795298--58795379	37	2.2	36	82	2	92	19	14	26	39	1.90
58811508--58811688	91	2.0	90	87	5	258	50	11	17	20	1.76
58820606--58820635	13	2.3	13	100	0	60	40	0	0	60	0.97
58828959--58829012	6	9.0	6	100	0	108	16	16	50	16	1.79
58829518--58829550	16	2.0	16	94	5	57	45	0	0	54	0.99
58830639--58830669	15	2.1	15	93	0	53	25	35	3	35	1.72
58832686--58832900	41	4.9	41	78	16	225	18	23	27	30	1.98
58832716--58832822	56	1.9	56	94	0	187	15	23	28	31	1.96
58834025--58834052	14	2.0	14	100	0	56	14	0	50	35	1.43
58834630--58834659	15	2.0	15	100	0	60	60	0	0	40	0.97
58834757--58834931	93	1.9	93	85	5	246	53	10	9	25	1.66
58837752--58838099	23	15.3	23	74	13	247	29	6	23	40	1.79
58837754--58838062	136	2.3	137	92	1	514	29	6	23	40	1.79
58837806--58838016	68	3.1	67	73	9	221	30	5	22	41	1.75
58837882--58838094	114	1.9	114	93	2	365	30	6	23	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58839005--58839183	43	4.2	43	83	5	254	22	17	31	29	1.96
58843094--58843123	7	4.3	7	95	0	51	46	10	0	43	1.37
58843341--58843389	18	2.7	18	79	14	55	30	4	0	65	1.11
58845483--58845515	3	11.0	3	100	0	66	66	0	0	33	0.92
58847925--58848339	143	2.9	143	88	0	616	29	20	22	27	1.98
58850159--58850189	15	2.1	15	93	0	53	29	6	0	64	1.18
58855858--58855911	25	2.3	25	75	18	62	53	7	3	35	1.47
58858167--58858231	30	2.2	30	100	0	130	9	15	20	55	1.67
58863225--58863272	26	1.9	25	84	16	64	45	0	2	52	1.12
58863088--58863297	93	2.3	91	86	5	280	46	4	2	46	1.37
58863350--58863680	66	5.4	63	66	24	206	42	3	5	48	1.42
58863315--58863724	120	3.4	120	94	2	691	42	2	4	49	1.38
58863686--58863727	15	2.7	16	82	14	52	45	0	2	52	1.13
58863661--58863970	157	2.0	157	96	0	566	48	4	2	44	1.37
58863830--58863880	18	3.0	18	78	18	56	47	0	0	52	1.00
58872381--58872405	3	8.3	3	100	0	50	64	0	36	0	0.94
58873947--58873996	19	2.7	18	84	9	64	60	8	0	32	1.26
58873998--58874036	20	2.0	20	89	0	60	58	2	0	38	1.12
58875659--58875683	2	12.5	2	100	0	50	52	0	48	0	1.00
58879931--58879962	3	10.7	3	100	0	64	68	0	0	31	0.90
58891912--58891936	3	8.3	3	100	0	50	32	0	0	68	0.90
58899081--58899208	48	2.7	46	81	4	123	28	21	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58901158--58901197	22	1.9	21	90	10	64	27	10	20	42	1.83
58901835--58901888	22	2.5	22	81	6	65	66	14	5	12	1.41
58903865--58903916	3	17.3	3	91	0	86	38	28	32	0	1.57
58906517--58906585	24	3.0	22	73	16	59	49	7	4	39	1.50
58916489--58916513	13	1.9	13	100	0	50	40	8	16	36	1.77
58925263--58925511	50	4.8	50	84	4	275	20	28	24	26	1.99
58925262--58925511	100	2.4	104	87	6	348	20	28	24	26	1.99
58925606--58925637	13	2.5	13	94	0	55	56	12	0	31	1.37
58925848--58925905	30	1.9	30	89	0	89	31	24	3	41	1.71
58929825--58929862	17	2.2	18	85	4	51	63	2	23	10	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211