genome.fa.s14.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  120  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33984362--33984401	12	3.5	11	84	15	55	2	15	0	82	0.77
33987537--33987631	49	2.0	47	89	8	147	55	11	4	28	1.54
33994773--33994810	17	2.2	18	85	4	51	63	2	23	10	1.39
33994792--33994846	12	4.6	12	73	15	51	63	0	23	12	1.29
34000484--34000509	3	8.7	3	100	0	52	69	0	0	30	0.89
34007281--34007413	50	2.7	50	83	0	167	27	21	29	22	1.99
34007687--34007725	20	2.0	20	89	0	60	58	0	25	15	1.37
34014527--34014639	46	2.4	47	86	5	167	46	21	12	20	1.83
34018561--34018607	25	1.9	24	86	4	67	51	10	19	19	1.75
34028403--34028585	51	3.6	50	82	5	217	25	16	27	30	1.97
34028406--34028588	101	1.8	101	86	2	269	25	17	27	29	1.97
34031524--34031627	36	2.9	35	81	5	97	23	14	20	42	1.88
34031536--34031627	36	2.6	35	87	3	139	22	16	21	39	1.92
34037163--34037201	15	2.6	15	91	0	60	69	2	0	28	1.02
34037161--34037201	20	2.0	20	90	0	64	70	2	0	26	0.99
34038219--34038256	18	2.1	18	90	0	58	57	13	0	28	1.36
34039713--34039746	14	2.2	16	90	10	54	67	2	2	26	1.19
34042525--34042591	21	3.3	21	65	23	61	37	8	5	47	1.59
34042770--34042892	49	2.5	49	81	6	142	29	19	27	23	1.98
34042714--34042899	50	3.8	49	78	9	157	27	22	26	24	2.00
34043102--34043140	20	2.0	20	90	10	62	56	5	23	15	1.59
34052157--34052195	5	7.8	5	88	0	60	76	2	0	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34058464--34058494	13	2.3	13	94	5	53	64	6	0	29	1.18
34060806--34061031	27	8.4	27	86	0	272	44	22	15	17	1.86
34061494--34061560	34	2.0	34	85	5	91	28	23	20	26	1.99
34062924--34063006	35	2.4	35	91	0	130	30	18	15	36	1.92
34064055--34064119	22	3.0	22	81	4	78	43	15	23	18	1.88
34064051--34064124	22	3.3	21	77	5	67	43	17	21	17	1.88
34064116--34064233	32	3.7	31	84	3	128	37	19	21	22	1.95
34064116--34064254	32	4.4	32	82	0	118	38	20	18	23	1.94
34064400--34064476	24	3.2	24	83	0	91	50	22	6	20	1.71
34064437--34064502	24	2.8	24	92	0	105	46	22	7	22	1.77
34064527--34064643	27	4.4	27	74	5	103	25	19	17	36	1.94
34068764--34068995	27	8.6	27	84	2	288	41	20	13	24	1.88
34068763--34068995	107	2.2	107	87	5	328	41	20	13	24	1.88
34079194--34079268	29	2.5	31	80	8	100	17	25	12	45	1.82
34079148--34079383	90	2.6	90	78	5	244	23	25	13	37	1.92
34079282--34079383	30	3.4	29	74	8	89	25	27	10	36	1.89
34079282--34079398	60	2.0	60	83	6	148	25	26	11	35	1.91
34081540--34081586	20	2.3	20	81	0	58	23	12	34	29	1.92
34083265--34083345	36	2.2	36	83	12	96	17	27	1	54	1.50
34084376--34084414	10	3.7	10	83	10	51	2	10	2	84	0.81
34084366--34084430	24	2.7	25	81	11	73	4	16	3	75	1.10
34085930--34085976	20	2.3	20	81	0	58	23	12	34	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34089782--34089820	8	5.0	8	90	6	62	25	2	0	71	0.98
34089782--34089841	23	2.6	23	81	7	59	30	3	1	65	1.19
34091390--34091451	20	3.0	20	72	9	52	51	14	4	29	1.63
34101546--34101692	76	1.9	75	93	1	249	25	17	18	38	1.92
34102266--34102308	22	1.9	23	86	13	63	44	4	4	46	1.45
34103118--34103170	26	2.0	27	85	10	74	52	1	1	43	1.23
34107477--34107543	20	3.3	21	75	8	84	20	29	16	32	1.95
34107410--34107567	41	3.9	41	91	1	246	20	30	16	32	1.94
34107410--34107567	81	1.9	82	89	1	246	20	30	16	32	1.94
34111139--34111206	35	1.9	35	87	0	100	27	22	5	44	1.76
34111136--34111206	16	4.2	16	77	13	63	28	21	5	45	1.74
34113971--34114003	8	4.1	8	85	14	50	84	0	15	0	0.61
34113974--34114000	14	1.9	14	100	0	54	88	0	11	0	0.50
34119823--34119861	19	2.1	19	90	0	60	30	10	10	48	1.70
34119842--34119931	35	2.6	35	96	0	162	34	10	12	43	1.76
34126170--34126208	19	2.1	19	95	0	69	28	10	12	48	1.74
34126149--34126273	54	2.3	53	86	6	171	30	12	14	43	1.82
34126787--34126835	23	2.2	21	82	7	53	38	18	8	34	1.80
34129336--34129393	18	3.2	18	90	0	89	67	3	18	10	1.35
34129357--34129437	30	2.7	29	75	7	81	60	2	24	12	1.44
34131148--34131245	20	4.9	20	83	1	117	25	32	16	25	1.96
34143788--34144372	295	2.0	295	95	0	1046	28	16	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34145078--34145149	22	3.0	24	69	19	60	22	15	25	37	1.93
34152607--34152647	16	2.5	16	80	4	55	12	4	2	80	0.97
34154374--34154423	22	2.2	22	80	16	57	44	2	0	54	1.11
34156669--34156735	34	2.0	34	93	0	116	31	16	8	43	1.79
34168679--34168931	126	2.0	126	96	0	470	29	15	16	38	1.90
34172966--34173053	28	3.1	28	88	3	124	29	23	25	21	1.99
34173525--34173670	27	5.4	27	74	6	125	23	15	16	45	1.85
34173541--34173670	54	2.4	53	82	3	170	23	15	17	43	1.87
34175402--34177503	529	4.0	529	99	0	4071	28	21	14	35	1.92
34182367--34182401	13	2.7	13	95	0	61	71	5	2	20	1.19
34184579--34184621	20	2.2	20	86	0	59	53	2	30	13	1.53
34190748--34190794	23	2.1	23	84	7	62	51	12	4	31	1.59
34208732--34208894	54	3.1	52	85	6	231	24	26	12	36	1.92
34213500--34213657	69	2.3	69	76	3	174	37	12	11	38	1.80
34214882--34215162	124	2.3	124	83	6	356	23	25	24	26	2.00
34214836--34215166	62	5.3	61	78	6	292	24	26	23	25	2.00
34215866--34215911	21	2.2	20	81	7	56	67	2	26	4	1.21
34215874--34215935	27	2.2	30	82	8	76	69	1	22	6	1.20
34235545--34235715	40	4.3	40	83	3	220	28	28	21	22	1.99
34235565--34235712	80	1.9	80	97	0	278	25	29	22	22	1.99
34238820--34239040	27	8.3	26	79	6	140	46	17	18	17	1.85
34238828--34239036	54	3.9	53	76	10	187	46	17	18	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34238828--34239024	81	2.4	80	80	7	220	46	18	18	16	1.85
34239366--34239471	28	3.8	28	89	1	160	24	24	22	28	2.00
34239366--34239503	28	5.0	28	83	2	127	23	24	21	30	1.99
34240462--34240499	15	2.5	15	100	0	76	34	18	34	13	1.89
34246787--34246838	25	2.1	26	82	13	65	30	0	23	46	1.53
34249109--34249151	23	1.9	23	90	4	70	51	9	4	34	1.55
34249737--34249841	51	2.1	51	90	0	165	42	18	12	26	1.85
34256531--34256584	23	2.2	25	78	15	60	62	3	22	11	1.43
34261210--34261248	19	2.1	19	90	0	60	30	7	10	51	1.64
34268855--34268892	19	2.0	19	100	0	76	36	21	21	21	1.95
34269595--34269624	11	2.7	11	100	0	60	80	6	0	13	0.91
34269582--34269628	24	2.0	24	91	0	76	74	6	2	17	1.12
34269582--34269628	13	3.8	13	83	11	62	74	6	2	17	1.12
34280151--34280189	16	2.5	16	95	4	71	20	12	5	61	1.50
34280226--34280270	13	3.6	13	82	11	58	17	2	4	75	1.07
34280229--34280273	11	4.0	11	85	5	63	20	2	6	71	1.20
34280228--34280273	23	2.0	23	91	0	74	19	2	6	71	1.18
34309868--34309919	26	2.0	26	92	0	86	28	34	21	15	1.94
34309880--34310029	70	2.1	71	92	1	248	30	30	16	23	1.96
34309949--34310171	104	2.2	103	92	2	367	31	31	18	17	1.95
34310500--34310563	30	2.2	29	81	10	76	29	28	6	35	1.82
34310507--34310563	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34312836--34312873	10	3.8	10	83	13	51	26	13	28	31	1.93
34316619--34316773	82	1.9	82	97	0	292	29	14	23	32	1.94
34318685--34318747	21	3.0	21	88	2	90	30	3	33	33	1.74
34320917--34320972	11	5.0	11	95	4	103	73	8	0	17	1.08
34321012--34321065	14	3.7	14	92	7	90	61	5	12	20	1.52
34321014--34321065	16	3.4	16	92	5	81	63	5	11	19	1.47
34337933--34338033	18	5.4	18	71	5	67	71	3	16	7	1.26
34337929--34338033	6	17.2	6	67	6	59	71	3	17	7	1.25
34337997--34338064	30	2.4	27	82	7	82	72	0	16	11	1.13
34338081--34338144	33	1.9	33	84	12	87	54	6	26	12	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211