genome.fa.s14.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  149  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44172730--44172819	25	3.6	25	72	8	67	34	21	17	26	1.95
44176603--44176685	30	2.8	28	79	12	94	24	27	21	26	1.99
44176959--44177007	17	2.9	16	79	8	53	34	12	12	40	1.80
44179243--44179269	14	1.9	14	100	0	54	74	0	7	18	1.05
44180492--44180557	27	2.5	27	81	16	77	43	1	18	36	1.59
44180474--44180596	13	9.4	13	71	15	92	42	0	17	39	1.55
44193507--44193549	22	2.0	22	85	0	59	30	20	11	37	1.89
44203878--44203907	11	2.7	11	94	0	51	50	26	0	23	1.50
44210692--44210761	25	2.8	25	86	0	104	21	22	21	34	1.97
44216246--44216296	22	2.5	20	83	6	57	47	1	9	41	1.48
44217049--44217088	20	2.0	20	90	0	62	27	10	12	50	1.72
44217034--44217100	34	1.9	35	90	3	109	31	8	13	46	1.74
44217028--44217104	14	5.0	15	71	20	52	33	9	14	42	1.77
44218125--44218222	40	2.5	40	89	0	142	27	17	18	36	1.93
44221190--44221269	27	3.0	27	82	8	85	30	18	12	38	1.88
44222551--44222603	26	2.0	26	88	0	79	16	11	26	45	1.82
44223820--44223917	17	5.4	17	64	13	52	50	13	4	32	1.60
44223781--44223938	37	4.3	38	89	4	227	47	13	5	33	1.65
44227939--44227987	6	8.2	6	97	0	71	40	0	42	16	1.48
44227930--44227969	18	2.2	18	86	0	53	32	2	47	17	1.61
44228151--44228190	16	2.5	16	91	0	62	27	5	35	32	1.79
44236155--44236205	10	5.7	9	77	15	52	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44236151--44236199	16	2.9	16	79	11	53	38	2	0	59	1.09
44242219--44242278	30	2.0	30	83	3	75	45	0	35	20	1.51
44242492--44242528	9	4.1	9	92	0	65	29	10	13	45	1.77
44242758--44242793	16	2.3	16	90	4	56	36	19	0	44	1.51
44246204--44246244	22	1.9	22	85	14	59	29	0	0	70	0.87
44246293--44246341	22	2.1	23	81	7	55	46	0	0	53	1.00
44248332--44248366	17	2.1	17	88	0	52	37	28	11	22	1.89
44249643--44249887	34	7.2	34	74	6	194	31	11	14	42	1.82
44249651--44249887	68	3.5	68	88	1	307	30	11	14	43	1.81
44249949--44250003	24	2.5	22	80	13	76	29	25	18	27	1.98
44250809--44250842	14	2.4	14	90	9	52	38	8	8	44	1.67
44251205--44251244	3	13.3	3	94	0	71	67	2	0	30	1.04
44253143--44253182	16	2.3	18	87	12	66	40	0	0	60	0.97
44253450--44253510	14	4.4	14	73	8	52	45	19	0	34	1.51
44253798--44253905	54	2.0	54	96	0	198	22	37	11	29	1.89
44261467--44261545	19	4.2	19	75	22	76	44	1	5	49	1.32
44269391--44269421	16	1.9	16	93	0	53	25	16	19	38	1.92
44283452--44283476	13	1.9	13	100	0	50	0	16	0	84	0.63
44291969--44291998	15	2.0	15	93	0	51	33	3	26	36	1.73
44295680--44295798	42	2.8	42	75	5	98	17	26	15	40	1.89
44295730--44295779	21	2.4	22	76	6	59	18	34	14	34	1.90
44295779--44296251	236	2.0	236	96	0	874	33	11	18	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44297577--44297797	34	6.5	33	74	10	173	42	14	11	31	1.82
44297553--44297789	68	3.5	68	87	2	300	43	14	11	30	1.82
44299073--44299107	17	2.1	17	88	0	52	22	11	28	37	1.89
44301099--44301147	22	2.1	23	81	7	55	53	0	0	46	1.00
44301196--44301236	22	1.9	21	85	14	57	70	0	0	29	0.87
44304647--44304682	16	2.3	16	90	4	56	44	0	19	36	1.51
44304912--44304948	9	4.1	9	92	0	65	45	13	10	29	1.77
44311242--44311290	16	2.8	17	77	14	55	59	0	2	38	1.09
44311236--44311286	9	5.7	9	77	15	52	64	0	1	33	1.05
44315034--44315085	26	2.0	26	96	0	95	13	23	34	28	1.92
44314958--44315323	104	3.5	104	90	3	562	19	19	29	30	1.97
44322194--44322241	25	1.9	25	95	0	87	12	20	35	31	1.90
44322116--44322481	102	3.6	102	93	1	592	20	19	29	30	1.97
44322295--44322346	26	2.0	26	96	0	95	13	23	34	28	1.92
44325489--44325563	5	15.0	5	80	5	80	38	20	5	36	1.75
44325786--44325821	14	2.6	14	91	4	56	44	22	0	33	1.53
44327689--44327771	30	2.8	30	80	12	98	57	2	8	31	1.41
44329277--44329331	5	11.4	5	86	11	53	61	5	0	32	1.19
44335013--44335037	3	8.3	3	100	0	50	32	0	36	32	1.58
44335042--44335134	3	31.0	3	88	0	123	25	0	7	66	1.18
44340117--44340145	12	2.4	12	100	0	58	58	0	34	6	1.25
44348588--44348727	51	2.7	52	83	5	178	29	13	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44348582--44348758	51	3.4	50	75	6	140	31	12	25	30	1.92
44348917--44348989	37	1.9	38	86	2	103	42	2	23	31	1.68
44351193--44351276	42	2.0	42	97	0	159	28	20	11	39	1.88
44356319--44356376	30	1.9	30	89	0	89	41	3	24	31	1.71
44356588--44356619	13	2.5	13	94	0	55	31	0	12	56	1.37
44356714--44356955	50	4.7	50	84	4	279	26	23	29	20	1.99
44356714--44356963	100	2.4	103	86	6	346	26	23	29	21	1.99
44361233--44361297	25	2.6	25	90	0	94	15	26	21	36	1.93
44363395--44363425	15	2.1	15	100	0	62	45	12	6	35	1.68
44363986--44364034	20	2.7	18	77	22	57	51	4	2	42	1.32
44368088--44368132	19	2.3	19	81	11	56	73	0	20	6	1.05
44368104--44368176	26	2.6	30	73	22	77	64	0	28	6	1.19
44368107--44368170	24	2.7	23	74	9	58	64	0	28	7	1.21
44375283--44375601	172	1.9	172	89	1	505	28	17	14	40	1.88
44378664--44378779	57	2.0	57	100	0	232	29	25	15	29	1.96
44380233--44380265	16	2.2	15	89	10	50	30	6	6	57	1.47
44380279--44380358	39	2.1	39	92	4	135	32	18	16	32	1.93
44380411--44380527	62	1.9	59	87	5	171	50	4	3	41	1.38
44380506--44380612	20	5.8	18	69	18	60	52	3	1	42	1.30
44380498--44380601	37	3.0	37	68	20	89	51	4	2	40	1.38
44392476--44392528	22	2.4	23	81	9	65	39	0	3	56	1.17
44395074--44395108	17	2.0	18	88	5	54	31	5	2	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44402733--44402916	79	2.3	81	81	7	216	25	22	27	25	2.00
44402732--44402916	40	4.7	40	82	6	216	24	22	27	25	2.00
44402788--44402939	79	1.9	79	82	7	193	26	19	26	26	1.99
44410657--44410840	79	2.3	81	83	7	234	24	21	27	26	1.99
44410656--44410840	40	4.7	40	84	6	234	24	21	27	26	1.99
44418777--44418886	44	2.5	43	84	7	107	30	25	22	21	1.99
44418789--44418886	44	2.2	44	87	3	144	30	23	24	21	1.99
44418816--44419169	44	7.6	44	68	16	144	32	18	20	27	1.96
44418798--44419131	142	2.4	142	90	0	533	32	20	20	26	1.97
44418984--44419368	98	4.0	98	86	6	547	32	16	21	28	1.95
44419200--44419395	44	4.5	44	70	12	129	31	16	21	30	1.95
44418842--44419316	240	2.0	239	83	6	604	33	17	21	28	1.96
44419180--44419347	88	1.9	88	91	2	275	33	15	21	29	1.94
44421039--44421073	17	2.0	18	88	5	54	31	5	2	60	1.35
44425006--44425048	18	2.4	18	81	14	61	46	4	9	39	1.57
44425516--44425669	28	5.5	28	95	0	247	26	12	27	32	1.93
44427384--44427467	43	2.0	43	95	0	150	28	14	28	28	1.95
44431766--44431801	18	1.9	19	88	5	56	41	0	5	52	1.24
44434242--44434297	22	2.6	22	85	2	69	12	30	28	28	1.93
44438605--44438635	11	2.8	11	90	0	53	6	22	6	64	1.40
44441370--44441423	25	2.2	25	86	0	72	29	22	18	29	1.97
44443652--44443694	16	2.7	16	78	10	52	13	0	20	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44448142--44448180	18	2.1	19	90	4	62	53	5	5	35	1.45
44448864--44448911	26	2.0	25	84	15	66	41	4	10	43	1.58
44450769--44451068	45	6.7	44	76	11	179	43	19	18	19	1.89
44450904--44451070	45	3.7	46	85	3	187	43	19	20	17	1.89
44451235--44451351	41	2.9	41	81	0	126	18	17	26	36	1.94
44451283--44451361	41	1.9	41	92	5	133	16	17	30	35	1.92
44453900--44454013	58	2.0	55	91	5	183	31	11	8	48	1.70
44470046--44470133	44	2.0	44	90	0	140	36	19	21	22	1.95
44470675--44470737	22	3.0	21	83	6	65	55	1	0	42	1.09
44481446--44481509	31	2.1	31	85	11	87	46	9	9	34	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211