genome.fa.s14.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  143  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42625291--42625325	18	2.1	16	89	10	52	40	5	2	51	1.40
42627740--42627858	36	3.3	36	85	0	148	14	10	36	39	1.79
42642082--42642279	27	7.3	27	78	6	188	42	18	16	22	1.88
42642058--42642279	54	4.1	53	80	5	214	44	18	14	22	1.86
42642095--42642264	81	2.1	81	86	4	236	43	19	14	22	1.87
42643629--42643694	33	2.1	32	86	8	91	15	10	9	65	1.47
42646408--42646498	37	2.5	37	80	5	96	15	9	29	45	1.78
42647292--42647331	21	1.9	21	85	10	55	27	5	27	40	1.77
42648805--42649089	114	2.5	111	80	5	313	26	10	24	39	1.87
42649182--42649215	5	6.4	5	87	12	50	20	0	0	79	0.73
42649183--42649216	17	2.0	17	100	0	68	23	0	0	76	0.79
42649278--42649323	21	2.2	21	96	0	83	23	26	17	32	1.97
42651858--42652002	69	2.1	70	98	1	283	14	23	24	37	1.92
42653603--42653649	6	7.5	6	88	9	67	21	17	0	61	1.34
42653633--42653758	51	2.5	50	82	8	130	28	19	5	46	1.73
42655348--42655381	10	3.3	10	88	8	50	82	0	11	5	0.83
42655360--42655406	19	2.6	18	78	15	53	76	0	14	8	1.01
42658910--42658950	18	2.3	18	87	8	57	9	29	4	56	1.53
42664039--42664074	14	2.5	15	90	4	56	58	0	0	41	0.98
42666485--42666525	21	2.0	21	90	0	64	51	7	12	29	1.66
42666843--42666894	24	2.2	24	82	6	61	50	3	1	44	1.31
42669963--42670006	20	2.2	20	80	11	56	40	11	6	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42674839--42674870	16	2.1	15	94	5	55	15	0	0	84	0.63
42674839--42674870	12	2.6	12	95	5	55	15	0	0	84	0.63
42681476--42681539	28	2.3	28	91	0	101	43	17	18	20	1.88
42687358--42687383	12	2.2	12	100	0	52	76	7	0	15	0.99
42688900--42688994	40	2.4	40	87	0	127	23	27	9	40	1.85
42689128--42689153	12	2.2	12	100	0	52	23	7	15	53	1.67
42708903--42708946	18	2.4	18	88	0	61	34	6	0	59	1.24
42708985--42709052	23	2.9	23	78	10	84	33	5	7	52	1.53
42710996--42711042	19	2.5	18	83	10	58	23	21	8	46	1.78
42713913--42713969	17	3.2	17	81	13	62	71	0	14	14	1.14
42713914--42713969	26	2.2	25	84	9	69	71	0	14	14	1.15
42714802--42714856	26	2.1	26	100	0	110	23	23	16	36	1.94
42715245--42715748	44	11.4	44	77	6	437	30	14	22	31	1.94
42715245--42715748	133	3.8	133	86	3	658	30	14	22	31	1.94
42715250--42715790	89	6.1	90	76	5	415	30	14	22	31	1.94
42715560--42715803	133	1.8	133	82	3	312	29	16	23	29	1.96
42715566--42715834	133	2.0	133	78	7	278	31	17	22	28	1.97
42717326--42717416	23	3.8	23	75	17	71	30	8	8	51	1.63
42724334--42724511	27	6.6	27	83	3	205	26	15	28	29	1.96
42724335--42724490	82	1.9	81	88	3	233	26	15	28	29	1.96
42724331--42724511	82	2.2	81	83	2	229	27	15	27	29	1.96
42727049--42727225	27	6.6	27	83	4	196	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42727050--42727204	82	1.9	80	86	5	222	27	15	27	29	1.96
42727046--42727225	82	2.2	81	82	3	220	27	15	27	30	1.96
42735191--42735230	21	1.9	21	84	0	53	55	2	10	32	1.47
42735476--42735523	19	2.5	19	86	3	60	77	0	0	22	0.78
42735482--42735547	24	2.8	24	81	4	71	71	0	4	24	1.05
42736487--42736532	21	2.2	20	84	3	56	13	15	4	67	1.38
42737121--42737579	50	9.2	50	68	4	280	23	22	22	31	1.98
42737064--42737585	100	5.2	99	87	3	665	22	22	22	31	1.98
42737066--42737585	199	2.6	200	86	3	638	22	22	23	31	1.98
42737595--42737742	46	3.3	46	75	11	169	28	18	22	30	1.98
42737713--42737825	41	2.7	43	76	14	117	30	20	16	31	1.95
42737718--42737875	44	3.7	43	76	13	137	29	20	18	30	1.97
42737628--42738397	175	4.4	175	92	0	1254	28	21	18	31	1.97
42737628--42738397	349	2.2	350	91	0	1263	28	21	18	31	1.97
42738324--42738407	44	1.9	44	85	4	116	29	20	17	32	1.96
42739841--42739882	7	6.0	7	86	10	59	14	16	0	69	1.20
42739833--42739880	15	3.4	14	80	8	62	14	14	0	70	1.16
42739833--42739889	21	2.6	21	80	5	69	15	15	0	68	1.22
42739833--42739888	14	3.9	15	84	11	64	16	16	0	67	1.23
42740725--42740761	19	1.9	20	88	5	58	0	16	0	83	0.64
42740723--42740761	20	2.0	20	90	10	62	0	17	0	82	0.68
42740758--42740803	6	7.7	6	92	0	65	15	6	10	67	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42745245--42745284	21	1.9	21	84	0	53	55	2	10	32	1.47
42745531--42745568	7	5.9	7	90	9	55	76	0	0	23	0.79
42745528--42745569	14	3.3	13	84	15	61	78	0	0	21	0.75
42748432--42748522	39	2.4	38	79	17	107	36	27	20	15	1.93
42751563--42751602	21	2.0	21	90	5	64	42	15	0	42	1.46
42752015--42752063	8	5.6	9	80	9	57	57	0	0	42	0.99
42752001--42752063	27	2.5	24	78	14	72	57	1	0	41	1.08
42752015--42752063	17	2.8	17	79	14	55	57	0	0	42	0.99
42752861--42752911	13	3.9	13	86	0	75	33	9	23	33	1.88
42754925--42755113	72	2.6	72	81	5	215	56	14	4	24	1.58
42757692--42757760	20	3.2	20	68	31	61	27	5	13	53	1.62
42757696--42757768	24	3.2	24	68	31	77	27	5	12	54	1.59
42757680--42757770	45	2.0	45	100	0	182	28	6	10	53	1.61
42758953--42759117	72	2.3	72	84	4	217	25	5	11	57	1.55
42761192--42761285	38	2.5	38	92	3	154	42	13	6	37	1.70
42761174--42761287	51	2.2	52	81	10	137	40	15	6	37	1.73
42761174--42761285	13	8.8	13	77	14	108	40	16	6	37	1.73
42762997--42763038	12	3.5	12	96	0	75	11	40	16	30	1.85
42763737--42763887	79	2.0	75	89	5	230	47	5	13	32	1.67
42764665--42764702	19	1.9	19	89	5	58	44	18	21	15	1.86
42765458--42765484	13	2.1	13	100	0	54	44	33	14	7	1.73
42765487--42765545	7	8.3	7	81	3	73	16	16	13	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42765790--42765891	37	2.7	37	86	4	143	35	3	12	48	1.60
42765909--42765974	9	7.4	9	84	3	62	31	6	25	36	1.81
42765900--42765974	18	4.2	18	87	3	98	33	6	24	36	1.81
42765900--42765975	26	2.9	26	84	2	80	32	6	23	36	1.81
42766574--42766689	22	5.8	20	71	13	62	24	13	14	47	1.81
42766585--42766624	11	3.8	11	75	24	50	32	5	15	47	1.66
42766630--42766689	22	2.7	22	94	0	102	18	18	15	48	1.81
42787184--42787241	25	2.3	25	93	0	98	36	37	6	18	1.78
42789380--42789722	51	6.8	50	78	5	339	29	25	16	29	1.97
42789379--42789722	102	3.4	102	88	2	469	29	25	16	29	1.97
42797626--42797678	14	3.9	14	81	16	67	26	13	13	47	1.79
42805803--42805871	20	3.5	20	75	13	70	13	27	15	43	1.84
42809060--42809125	33	2.0	33	85	5	89	33	25	0	40	1.56
42817827--42817879	9	5.7	9	83	16	72	45	18	11	24	1.82
42817826--42817879	20	2.8	20	88	8	85	46	18	11	24	1.81
42817817--42817873	29	2.0	29	86	6	80	45	19	10	24	1.81
42818333--42818359	13	2.1	13	100	0	54	25	7	14	51	1.68
42818556--42818591	18	2.0	18	88	0	54	33	22	16	27	1.95
42826977--42827024	2	24.0	2	100	0	96	50	0	50	0	1.00
42829603--42829638	4	9.0	4	100	0	72	25	0	25	50	1.50
42839040--42839297	128	2.0	128	100	0	516	30	22	19	27	1.98
42842300--42842379	25	3.2	25	76	3	81	25	27	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42844669--42844751	36	2.2	36	83	10	105	54	3	2	39	1.31
42844711--42844753	12	3.3	13	83	6	52	53	0	2	44	1.13
42845164--42845203	19	2.1	19	86	9	55	32	2	5	60	1.32
42846338--42846368	16	1.9	16	93	0	53	70	9	9	9	1.33
42850467--42850515	19	2.6	19	84	9	57	32	2	2	63	1.17
42853922--42854071	42	3.7	40	77	12	137	16	17	28	38	1.91
42855501--42855534	17	1.9	18	94	5	61	82	5	5	5	0.95
42855501--42855541	19	2.2	19	87	12	59	80	7	4	7	1.02
42855692--42856208	271	1.9	271	78	5	562	34	15	17	33	1.91
42857313--42857353	13	3.2	13	83	13	57	34	4	9	51	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211