genome.fa.s14.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  179  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53154100--53154299	90	2.2	90	78	7	217	36	12	25	26	1.91
53154906--53154935	14	2.1	14	93	0	51	10	16	23	50	1.75
53157063--53157119	22	2.6	22	86	8	73	52	7	17	22	1.68
53162747--53162780	17	2.0	17	100	0	68	41	5	5	47	1.52
53163374--53163424	19	2.7	19	79	11	52	68	0	1	29	1.00
53165279--53165315	15	2.5	15	86	0	56	24	27	13	35	1.93
53170527--53170560	5	7.2	5	87	12	54	38	0	0	61	0.96
53170534--53170559	13	2.0	13	100	0	52	30	0	0	69	0.89
53170529--53170565	18	2.1	18	94	0	65	29	2	0	67	1.04
53178171--53178305	18	8.0	17	69	19	86	39	0	2	57	1.19
53179224--53179636	205	2.0	205	98	0	799	30	21	20	27	1.98
53188149--53188324	91	1.9	91	83	2	228	32	17	23	26	1.97
53200029--53200080	23	2.3	22	75	21	54	9	23	1	65	1.32
53200038--53200092	12	4.6	12	73	15	51	12	23	0	63	1.29
53200078--53200110	17	2.0	17	88	5	50	12	24	0	63	1.28
53202465--53202498	4	9.0	4	93	6	54	79	0	0	20	0.73
53201650--53203626	995	2.0	982	98	0	3144	40	16	16	26	1.90
53205339--53205428	28	3.2	28	69	25	80	43	1	20	35	1.59
53214165--53214256	43	2.1	43	87	0	130	32	28	11	27	1.92
53222133--53222175	15	2.9	15	79	6	52	34	6	18	39	1.78
53222593--53222647	23	2.4	23	75	6	58	36	16	10	36	1.84
53222749--53222775	14	1.9	14	100	0	54	74	0	0	25	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53223242--53223293	24	2.2	24	89	0	77	28	23	5	42	1.77
53226755--53226864	33	3.3	33	77	7	87	26	22	16	34	1.95
53230027--53230060	16	2.1	15	89	10	50	20	8	5	64	1.43
53239359--53239537	42	4.3	42	79	8	193	22	17	21	38	1.93
53239359--53239531	84	2.1	84	86	2	240	21	17	21	38	1.94
53239987--53240031	3	14.7	3	86	4	54	37	4	0	57	1.19
53241517--53241619	51	2.0	51	100	0	206	36	7	11	43	1.70
53243897--53244022	44	2.9	44	82	0	144	40	21	14	23	1.90
53249464--53249498	7	4.9	7	93	6	61	25	2	0	71	1.00
53250801--53251124	46	7.0	46	91	4	546	28	21	9	41	1.84
53250801--53251116	93	3.4	93	95	2	566	28	21	9	41	1.84
53251205--53251268	31	2.1	31	90	0	101	32	12	7	46	1.70
53260652--53260881	40	5.8	40	82	0	235	19	28	16	35	1.94
53260725--53260860	20	6.8	20	65	3	76	22	30	15	31	1.95
53260652--53260842	80	2.4	80	87	0	265	18	28	17	35	1.94
53260652--53260870	80	2.7	80	81	2	260	19	29	17	34	1.94
53260654--53260873	120	1.8	120	81	5	275	19	29	17	34	1.94
53261906--53262005	48	2.1	48	88	3	148	35	4	19	42	1.70
53271128--53271171	22	2.0	21	86	4	61	13	13	27	45	1.81
53271260--53271359	42	2.4	42	91	0	164	37	24	20	19	1.94
53271718--53271756	12	3.2	12	88	0	60	2	33	17	46	1.62
53271741--53271809	21	3.3	21	87	0	93	1	42	20	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53277321--53277594	9	30.2	9	76	7	250	30	2	16	50	1.60
53277420--53277589	82	2.1	84	77	11	86	29	3	15	51	1.61
53277616--53277685	20	3.5	21	77	11	67	31	0	12	55	1.38
53277606--53277704	29	3.3	28	81	14	101	31	1	12	55	1.43
53277616--53277721	32	3.4	31	79	12	110	33	0	12	53	1.44
53278845--53279245	219	1.8	219	85	6	562	49	17	15	17	1.81
53279204--53279291	44	2.0	46	90	4	144	44	28	5	21	1.75
53279401--53279446	23	2.0	23	83	8	58	60	17	4	17	1.51
53282519--53282594	38	2.0	38	94	0	134	30	17	14	38	1.89
53282383--53282780	212	1.9	212	89	3	631	27	19	16	35	1.94
53283554--53283602	20	2.5	19	80	6	53	18	16	32	32	1.93
53288281--53288326	6	7.7	6	92	0	65	43	0	39	17	1.49
53288281--53288326	12	3.8	12	94	0	74	43	0	39	17	1.49
53288281--53288326	18	2.6	18	92	0	74	43	0	39	17	1.49
53300706--53300745	20	2.1	19	85	4	53	42	5	7	45	1.54
53302538--53302580	15	2.8	16	82	7	52	48	0	16	34	1.46
53302737--53302787	26	2.0	26	88	3	77	45	0	3	50	1.20
53302750--53302846	26	3.5	26	72	15	86	51	2	1	45	1.19
53302750--53302885	57	2.4	57	88	1	191	50	2	1	45	1.22
53302754--53302913	57	2.8	57	83	4	180	52	2	1	43	1.25
53307343--53307389	23	2.0	23	100	0	94	57	12	8	21	1.62
53308162--53308186	12	2.1	12	100	0	50	72	16	0	12	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53312134--53312240	46	2.4	45	84	3	142	43	17	18	19	1.88
53312226--53312401	45	3.9	45	79	4	185	34	15	21	27	1.94
53312230--53312399	90	1.9	90	91	2	279	34	16	21	28	1.95
53312230--53312420	90	2.1	90	85	5	262	36	16	20	26	1.94
53312367--53312524	45	3.5	45	82	3	138	45	18	18	17	1.86
53312409--53312524	46	2.6	45	85	1	151	48	16	18	17	1.82
53315561--53315716	43	3.7	43	81	7	142	33	26	17	21	1.96
53317600--53317636	9	4.1	9	92	0	65	29	10	13	45	1.77
53318384--53318498	60	1.9	62	87	7	173	46	20	0	32	1.51
53318985--53319111	40	3.2	40	83	5	148	31	21	20	26	1.98
53319115--53319214	41	2.4	41	83	8	123	32	27	19	22	1.97
53320729--53320777	5	10.0	5	80	12	50	77	0	2	20	0.87
53320729--53320777	20	2.5	19	86	3	62	77	0	2	20	0.87
53333206--53333252	15	2.9	16	78	12	51	40	10	2	46	1.50
53335674--53335779	51	2.1	50	83	15	128	66	3	3	26	1.26
53337207--53337368	44	3.5	44	71	18	125	27	20	20	30	1.98
53337486--53338067	100	5.8	100	83	3	708	22	19	24	32	1.97
53337463--53338073	50	12.2	50	73	3	460	22	19	24	33	1.97
53340444--53340468	13	1.9	13	100	0	50	8	0	24	68	1.16
53342273--53342378	41	2.6	41	89	0	158	23	20	23	32	1.98
53348313--53348337	13	1.9	13	100	0	50	8	0	24	68	1.16
53350141--53350246	41	2.6	41	92	0	176	22	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53356305--53356351	15	2.9	16	78	12	51	40	10	2	46	1.50
53360594--53361175	100	5.8	100	82	4	638	22	19	23	33	1.97
53360571--53361178	50	12.2	50	72	3	420	22	19	23	34	1.97
53360596--53361175	200	2.9	200	83	3	704	22	20	23	33	1.97
53361283--53361345	21	2.8	23	74	16	60	26	3	11	58	1.47
53372068--53372429	181	2.0	181	95	1	654	41	14	11	32	1.81
53373150--53373200	24	2.1	24	92	0	84	23	25	5	45	1.75
53379435--53379477	19	2.3	19	84	8	52	37	9	25	27	1.87
53381565--53381611	18	2.8	17	78	12	53	46	2	10	40	1.50
53391615--53391657	21	2.0	21	95	0	77	48	4	20	25	1.69
53393034--53393066	14	2.2	15	89	10	50	18	0	0	81	0.68
53393035--53393077	22	2.0	21	90	9	68	18	2	0	79	0.85
53393035--53393080	21	2.2	21	88	7	67	17	2	0	80	0.81
53397090--53397131	18	2.3	19	87	4	59	54	7	2	35	1.41
53399796--53399849	25	2.2	25	83	6	65	24	14	44	16	1.85
53400416--53400464	25	2.0	25	88	8	73	28	2	36	32	1.69
53401376--53401625	27	9.3	27	78	7	240	44	19	11	25	1.83
53408422--53408460	21	1.9	21	89	5	62	23	25	35	15	1.94
53412963--53413252	81	3.6	80	80	4	350	42	20	16	20	1.89
53412963--53413252	27	10.7	27	80	7	302	42	20	16	20	1.89
53412963--53413252	54	5.4	54	80	2	341	42	20	16	20	1.89
53431877--53431905	13	2.1	14	93	6	51	68	13	6	10	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53437577--53437653	38	2.0	38	100	0	154	44	23	7	24	1.80
53450115--53450233	49	2.4	48	80	4	139	31	16	26	25	1.97
53453931--53453997	20	3.4	19	82	10	73	19	25	0	55	1.43
53469511--53469637	6	20.0	6	65	16	51	71	5	7	15	1.27
53469566--53469637	6	11.5	6	73	19	58	76	2	6	13	1.10
53475245--53475277	17	2.0	17	88	5	50	18	6	9	66	1.40
53482399--53482441	21	2.2	20	87	8	61	18	37	18	25	1.94
53489779--53489931	41	3.7	40	76	6	155	22	29	14	33	1.94
53489780--53489931	82	1.9	82	83	5	200	22	29	14	33	1.94
53497104--53497255	41	3.7	41	85	3	207	21	28	16	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211