genome.fa.s14.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  207  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61023360--61023431	31	2.3	31	80	7	83	27	15	18	38	1.90
61027457--61027672	111	1.9	111	87	0	315	33	26	13	26	1.93
61027836--61027865	14	2.1	14	100	0	60	36	13	23	26	1.92
61030939--61031012	26	2.9	26	79	2	87	35	21	6	36	1.80
61032544--61032587	21	2.1	21	95	0	79	52	9	15	22	1.71
61058903--61058943	21	2.0	21	90	0	64	29	21	29	19	1.98
61065049--61065090	19	2.0	20	86	13	59	66	0	0	33	0.92
61073451--61073484	17	1.9	18	94	5	61	70	0	0	29	0.87
61076879--61076948	31	2.3	31	84	0	95	41	2	5	50	1.41
61077773--61077806	14	2.5	14	90	4	52	17	0	32	50	1.47
61084319--61084347	6	4.8	6	100	0	58	51	13	0	34	1.42
61092455--61092529	33	2.3	33	92	0	123	48	13	6	32	1.68
61093505--61093697	82	2.4	82	96	0	350	26	19	30	22	1.98
61094502--61094532	6	5.3	6	92	7	55	83	0	0	16	0.64
61094501--61094532	11	2.8	11	95	4	55	81	0	0	18	0.70
61095132--61095177	20	2.4	19	85	10	58	41	0	6	52	1.27
61095140--61095184	19	2.4	18	77	3	54	40	0	4	55	1.20
61108119--61108250	64	2.1	64	92	0	219	28	28	14	28	1.95
61118285--61118322	18	2.1	18	85	9	51	71	2	23	2	1.12
61121082--61121111	2	15.0	2	92	0	51	46	0	3	50	1.18
61121306--61121362	21	2.7	22	86	5	73	3	5	24	66	1.28
61121425--61121466	12	3.6	12	75	18	52	23	4	4	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61121424--61121476	23	2.3	23	96	0	97	24	3	11	60	1.47
61127709--61127746	15	2.6	16	84	16	55	68	2	0	28	1.03
61128723--61128778	29	1.9	29	96	0	103	33	0	8	57	1.30
61138331--61138357	5	5.4	5	100	0	54	44	18	37	0	1.50
61142898--61142942	22	2.0	24	82	8	58	6	28	2	62	1.33
61143139--61143180	3	14.0	3	100	0	84	66	0	33	0	0.92
61143326--61143371	3	15.3	3	90	0	74	0	32	0	67	0.91
61162605--61162661	21	2.8	20	76	7	51	50	15	12	21	1.76
61167036--61167062	2	13.5	2	100	0	54	48	0	0	51	1.00
61185012--61185038	7	3.9	7	100	0	54	29	14	25	29	1.95
61186412--61186438	3	9.0	3	100	0	54	33	33	0	33	1.58
61190920--61190946	2	13.5	2	100	0	54	51	0	0	48	1.00
61192653--61192685	17	1.9	17	93	0	57	27	0	3	69	1.03
61193114--61193282	92	1.8	92	84	2	232	23	18	17	40	1.91
61193361--61193487	59	2.2	59	77	7	134	41	16	17	24	1.89
61197787--61197835	24	2.0	24	88	4	71	30	4	10	55	1.52
61200124--61200190	34	1.9	35	84	3	91	46	13	8	31	1.74
61200159--61200198	14	2.9	14	84	0	53	42	17	7	32	1.77
61200626--61200677	14	3.6	14	76	7	50	57	1	3	36	1.28
61205857--61205902	24	2.0	22	88	12	67	43	4	0	52	1.21
61209358--61209404	23	2.0	24	83	8	60	57	0	10	31	1.33
61214148--61214197	23	2.1	24	85	3	66	38	14	4	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61214323--61214352	6	4.8	6	95	4	51	66	0	0	33	0.92
61215688--61215720	17	1.9	17	100	0	66	48	0	9	42	1.35
61221773--61221813	7	5.9	7	97	0	73	31	0	53	14	1.41
61226471--61226528	2	29.0	2	100	0	116	0	50	0	50	1.00
61226850--61226962	51	2.2	51	84	3	138	34	12	8	44	1.73
61234782--61234811	8	3.6	8	95	4	51	33	0	0	66	0.92
61234798--61234867	11	6.6	11	74	22	53	35	1	0	62	1.04
61234743--61234875	40	3.4	38	84	9	178	36	2	0	60	1.09
61234848--61234885	19	1.9	19	89	5	58	39	0	0	60	0.97
61247431--61247720	83	3.5	81	78	11	243	41	23	5	29	1.77
61247716--61248008	79	3.6	81	78	10	278	39	24	8	27	1.84
61247504--61247905	219	1.8	217	86	2	581	40	23	7	28	1.82
61251806--61251837	12	2.8	12	95	4	57	34	0	6	59	1.23
61257399--61257428	14	2.1	14	100	0	60	46	40	0	13	1.43
61258369--61258399	4	7.8	4	92	0	53	22	0	22	54	1.44
61260667--61260745	41	1.9	40	92	5	131	44	20	5	30	1.73
61264609--61264651	14	3.0	14	75	3	50	62	4	0	32	1.15
61266160--61266214	29	1.9	29	85	3	76	25	10	5	58	1.53
61266681--61267056	187	2.0	184	97	1	626	37	14	15	32	1.88
61269369--61269405	3	12.3	3	100	0	74	67	0	0	32	0.91
61271296--61271389	48	1.9	50	80	8	113	57	9	2	30	1.43
61283224--61283258	4	8.8	4	87	12	54	48	25	22	2	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61285571--61285630	31	1.9	31	86	0	84	28	15	16	40	1.89
61290644--61290671	13	2.2	13	100	0	56	46	0	14	39	1.44
61296206--61296240	13	2.5	14	90	9	54	48	0	17	34	1.47
61307833--61307892	5	12.2	5	83	16	81	40	0	0	60	0.97
61307836--61307886	3	19.0	3	75	22	51	39	0	0	60	0.97
61307901--61307996	40	2.3	40	87	3	138	62	9	28	0	1.26
61312904--61313023	41	2.9	40	83	2	132	30	23	17	28	1.97
61315709--61315772	29	2.2	29	91	5	103	26	28	29	15	1.96
61326229--61326259	14	2.2	14	94	0	53	48	6	0	45	1.28
61326674--61326870	98	2.0	98	92	0	331	37	25	9	28	1.86
61327540--61327588	24	2.0	26	88	8	75	57	4	8	30	1.47
61327997--61328022	13	2.0	13	100	0	52	84	0	0	15	0.62
61328356--61328468	19	5.8	19	88	4	172	37	14	10	38	1.80
61328333--61328468	40	3.4	38	86	8	164	38	13	9	37	1.78
61328356--61328467	59	1.9	59	92	0	188	37	13	10	38	1.79
61329688--61329724	3	12.3	3	88	0	56	62	0	37	0	0.96
61332829--61332982	63	2.4	63	96	0	290	22	19	14	43	1.87
61339301--61339330	6	5.0	6	95	0	51	53	0	13	33	1.40
61340223--61340615	133	2.9	133	80	8	415	33	14	20	31	1.93
61340255--61340629	134	2.8	132	79	6	400	32	14	20	32	1.92
61340984--61341024	20	2.0	21	85	4	57	19	4	39	36	1.73
61345359--61345453	29	3.2	29	79	4	111	37	20	2	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61345768--61345864	14	7.0	14	79	9	58	68	0	29	2	1.01
61345801--61345836	14	2.6	14	100	0	72	61	0	33	5	1.19
61345787--61345867	42	1.9	42	82	5	101	69	0	27	3	1.05
61346196--61346237	14	2.8	16	82	14	61	80	0	19	0	0.70
61346766--61346808	18	2.4	18	92	0	68	20	13	16	48	1.80
61351852--61352881	80	13.3	78	86	8	1351	25	16	21	36	1.94
61351853--61352881	159	6.6	156	87	6	1338	25	16	21	36	1.94
61353046--61353161	29	4.0	29	66	6	74	31	18	6	42	1.77
61353473--61353539	23	2.8	23	81	4	71	74	5	16	2	1.14
61353619--61353704	7	12.6	7	77	21	60	74	0	24	1	0.89
61353619--61353705	24	4.0	21	74	22	81	74	0	24	1	0.88
61353619--61353704	32	2.8	32	75	8	90	74	0	24	1	0.89
61353632--61353698	35	1.9	35	84	6	91	73	0	25	1	0.92
61353985--61354017	17	1.9	17	93	0	57	30	12	12	45	1.78
61354028--61354065	17	2.2	17	90	0	58	23	2	2	71	1.12
61354206--61354248	18	2.4	18	96	0	77	20	13	13	51	1.76
61355879--61355929	21	2.4	21	90	0	75	33	19	45	1	1.62
61356311--61356431	43	2.8	43	84	0	161	31	19	23	25	1.98
61356417--61356476	30	2.0	30	93	0	102	28	21	21	28	1.99
61356447--61356587	42	3.4	42	89	0	210	30	23	21	24	1.99
61356830--61356968	43	3.2	42	86	4	188	30	33	16	20	1.94
61356830--61356988	43	3.7	43	86	2	178	30	32	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61356911--61357022	42	2.7	43	84	4	129	37	29	13	19	1.90
61357037--61357083	24	2.0	23	83	8	58	40	0	4	55	1.19
61361535--61361566	13	2.3	15	89	10	50	56	0	0	43	0.99
61362135--61362174	20	2.0	20	85	4	55	50	17	10	22	1.76
61362241--61362282	7	6.0	7	83	10	59	47	38	0	14	1.44
61362242--61362282	13	2.9	14	85	10	57	48	36	0	14	1.44
61362725--61362964	41	5.9	41	93	1	383	30	30	20	18	1.96
61363014--61363089	40	1.9	40	89	2	118	23	18	23	34	1.96
61363108--61363169	31	2.0	31	87	6	90	24	17	29	29	1.97
61365787--61365887	36	2.8	36	83	3	112	40	8	19	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211