genome.fa.s14.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  116  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32571857--32572061	24	8.8	23	70	10	114	35	5	4	54	1.44
32571860--32572115	69	3.7	68	78	12	213	35	6	5	53	1.48
32572175--32572219	23	2.0	23	90	0	72	31	6	4	57	1.44
32576403--32576507	44	2.4	44	93	0	183	25	27	14	32	1.94
32576695--32576883	89	2.1	89	85	1	254	29	24	18	28	1.98
32576630--32576886	44	5.8	45	71	5	164	29	24	17	28	1.97
32576408--32576860	133	3.4	133	68	6	335	28	24	17	29	1.97
32576714--32576889	89	2.0	89	89	0	271	26	25	18	30	1.98
32584959--32584998	20	2.0	20	95	0	71	30	12	25	32	1.92
32589569--32589611	10	4.6	9	80	8	50	74	0	11	13	1.07
32591344--32591427	20	4.4	18	71	21	55	53	4	0	41	1.22
32591663--32591774	41	2.7	41	80	2	127	41	21	16	19	1.90
32597165--32597283	43	2.8	43	83	5	168	24	15	31	28	1.96
32597166--32597334	43	3.9	43	80	4	153	26	15	26	32	1.95
32597167--32597326	86	1.9	86	84	2	214	26	15	26	31	1.96
32601331--32601399	31	2.2	31	84	0	84	28	10	11	49	1.72
32602036--32602076	19	2.1	20	86	4	57	70	7	2	19	1.22
32602747--32602776	15	1.9	16	93	6	53	33	23	26	16	1.96
32611119--32611236	44	2.7	43	77	13	125	30	27	16	24	1.97
32618934--32619049	43	2.7	43	79	10	121	27	26	19	25	1.99
32631221--32631277	26	2.2	25	87	3	78	42	17	10	29	1.83
32635381--32635405	12	2.1	12	100	0	50	68	0	8	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32637335--32637374	19	2.0	20	90	4	64	57	0	7	35	1.27
32638586--32638632	21	2.1	22	81	14	53	61	6	4	27	1.39
32641893--32642018	60	2.1	58	83	4	153	34	15	9	39	1.80
32642289--32642530	126	1.9	125	84	4	317	40	7	12	39	1.72
32642614--32642677	28	2.3	28	83	2	85	40	1	0	57	1.08
32642805--32642834	16	1.9	15	93	6	51	53	0	6	40	1.27
32642882--32642926	21	2.1	21	100	0	90	37	8	13	40	1.76
32643316--32643344	14	2.0	15	93	6	51	62	0	0	37	0.96
32644089--32644113	10	2.5	10	100	0	50	24	28	16	32	1.96
32649982--32650097	59	2.0	59	98	0	223	31	9	19	39	1.84
32657524--32657602	31	2.6	32	80	6	92	48	3	7	40	1.50
32661489--32661688	107	1.9	101	83	8	249	27	24	16	32	1.96
32661579--32661661	33	2.5	33	78	7	96	26	21	16	34	1.95
32675518--32675697	40	4.6	40	80	9	192	25	22	27	25	2.00
32683426--32683609	40	4.7	40	82	8	209	24	22	27	25	2.00
32683426--32683609	79	2.3	81	83	8	227	24	22	27	25	2.00
32683478--32683642	79	2.1	79	84	6	210	26	21	27	25	1.99
32687767--32687792	13	2.0	13	100	0	52	23	23	0	53	1.46
32687851--32687894	23	1.9	23	85	0	61	25	6	15	52	1.68
32703597--32703654	24	2.4	23	77	8	62	17	10	10	62	1.54
32709700--32709748	26	1.9	25	83	4	62	22	4	8	65	1.37
32720215--32720247	16	1.9	18	88	11	52	45	6	15	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32722636--32722689	21	2.6	21	88	8	76	37	9	14	38	1.79
32722639--32722689	20	2.5	21	87	9	70	37	9	13	39	1.78
32723215--32723241	13	2.1	13	100	0	54	37	7	7	48	1.59
32728546--32728614	32	2.0	37	83	13	94	50	13	7	28	1.67
32738499--32738586	44	2.0	44	97	0	167	20	19	13	46	1.83
32746855--32746898	15	2.9	14	78	15	52	70	2	20	6	1.21
32748569--32748605	16	2.3	16	86	13	58	40	0	0	59	0.97
32748591--32748626	18	1.9	18	88	5	54	58	0	0	41	0.98
32749350--32749390	15	2.7	15	88	0	64	58	2	12	26	1.46
32749827--32749940	56	2.0	56	94	0	201	42	10	13	34	1.78
32753136--32753161	12	2.2	12	100	0	52	30	0	15	53	1.42
32754134--32754266	69	1.9	69	83	8	173	37	3	3	55	1.33
32766927--32766988	30	2.1	30	84	0	79	37	8	8	46	1.63
32771326--32771409	28	3.0	28	98	0	159	32	5	21	40	1.77
32772299--32772342	19	2.3	19	84	7	54	70	2	6	20	1.21
32778755--32779684	465	2.0	464	95	0	1689	25	16	14	42	1.87
32780790--32780889	35	2.9	35	86	0	137	22	27	23	28	1.99
32793281--32793362	27	3.1	27	81	10	89	20	24	20	34	1.97
32795034--32795062	12	2.4	12	100	0	58	31	44	0	24	1.54
32798852--32798942	44	2.0	46	93	4	159	26	4	31	37	1.76
32798852--32798955	39	2.4	44	83	12	128	28	3	31	35	1.75
32799101--32799152	18	2.9	18	88	8	79	57	1	1	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32799101--32799234	17	8.0	17	70	17	93	55	2	1	40	1.21
32799116--32799298	38	4.6	39	68	20	112	53	3	2	40	1.31
32802014--32802044	15	2.1	14	94	5	53	70	0	9	19	1.14
32803464--32803768	88	3.4	86	79	11	296	40	16	8	34	1.79
32803927--32803990	11	6.6	10	79	11	55	67	0	1	31	1.00
32803918--32803991	20	3.7	19	74	12	67	66	0	1	32	1.00
32803977--32804003	14	1.9	14	100	0	54	77	0	0	22	0.76
32803873--32803990	9	12.6	9	73	16	71	67	1	0	29	1.06
32803957--32803992	11	3.5	11	85	14	58	75	0	0	25	0.81
32804225--32804277	28	2.0	26	85	7	70	41	3	1	52	1.30
32804248--32804341	38	2.5	39	79	8	95	40	3	0	56	1.15
32804244--32804361	19	6.3	19	73	10	82	38	2	0	57	1.18
32806106--32806136	15	2.0	16	93	6	55	51	6	16	25	1.68
32809625--32809712	28	3.1	28	79	6	97	18	14	30	36	1.91
32815136--32815171	18	2.0	18	88	0	54	22	27	0	50	1.50
32815379--32815673	51	5.8	49	76	8	261	29	25	15	30	1.96
32815379--32815673	102	2.9	103	89	1	416	29	25	15	30	1.96
32815386--32815669	153	1.9	150	80	8	331	29	25	14	29	1.95
32817474--32817510	18	2.0	19	94	5	67	21	45	0	32	1.52
32817712--32817809	31	3.1	32	80	14	123	63	0	1	35	1.02
32817734--32817827	14	6.5	14	67	19	50	65	0	2	31	1.04
32817739--32817887	42	3.5	42	85	9	198	64	0	2	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32817739--32817887	41	3.6	39	86	9	190	64	0	2	32	1.12
32817780--32817813	17	2.0	17	88	0	50	70	0	0	29	0.87
32817823--32817899	22	3.6	21	72	10	75	62	1	2	33	1.17
32818109--32818163	17	3.4	17	69	19	53	23	38	0	38	1.55
32821426--32821477	23	2.3	23	75	0	59	15	15	32	36	1.89
32821507--32821563	30	1.9	30	85	0	78	26	14	26	33	1.94
32822639--32822664	8	3.2	8	100	0	52	34	0	38	26	1.57
32826499--32826541	15	2.9	15	92	0	68	41	30	0	27	1.56
32838464--32838696	41	5.6	40	78	8	189	24	18	24	33	1.97
32838505--32838657	83	1.8	83	94	0	270	22	18	25	33	1.97
32843088--32843127	12	3.1	14	79	17	50	25	2	0	72	0.97
32846334--32846521	41	4.6	40	83	8	216	22	17	25	34	1.96
32846334--32846527	84	2.3	83	87	4	268	22	19	24	33	1.97
32851828--32851873	23	2.0	23	86	0	65	41	15	15	28	1.87
32856648--32856708	31	2.0	31	100	0	122	40	13	19	26	1.88
32856993--32857054	29	2.1	30	84	3	81	58	8	17	16	1.62
32870190--32870236	15	3.3	15	70	11	53	29	27	23	19	1.98
32870177--32870346	28	6.0	28	74	6	135	25	23	25	25	2.00
32871575--32871610	2	18.0	2	100	0	72	50	0	0	50	1.00
32871814--32871849	8	4.5	8	92	0	54	61	0	0	38	0.96
32874109--32874259	11	14.4	11	69	22	76	62	0	1	35	1.07
32874100--32874164	30	2.1	31	91	2	105	63	0	1	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32874081--32874310	43	5.4	42	82	8	270	63	0	1	34	1.05
32874188--32874248	31	1.9	32	93	3	106	62	0	3	34	1.12
32891181--32891230	23	2.2	23	92	0	82	26	40	8	26	1.83
32891677--32891718	14	3.2	13	80	9	50	42	4	0	52	1.22
32893617--32893706	39	2.3	39	88	3	137	36	15	16	31	1.90
32894221--32894249	15	2.0	15	93	6	51	34	0	10	55	1.34
32907111--32907156	22	2.2	20	85	14	58	36	0	28	34	1.58
32907117--32907164	22	2.1	23	84	7	62	47	2	25	25	1.62
32925429--32925473	22	2.0	22	83	8	56	40	6	0	53	1.27
32928301--32928330	13	2.3	13	94	0	51	20	30	0	50	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211