genome.fa.s14.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  193  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57009805--57009839	18	1.9	18	94	0	61	60	0	2	37	1.12
57012168--57012464	46	6.8	44	74	11	204	27	21	18	31	1.97
57012094--57012506	170	2.4	170	94	0	727	29	22	18	29	1.97
57012392--57012552	87	1.9	87	88	5	245	29	21	18	29	1.97
57012348--57012551	46	4.6	44	72	12	134	29	21	18	30	1.97
57035282--57035457	60	2.8	62	81	8	198	42	18	5	34	1.72
57043349--57043506	59	2.6	60	77	12	187	43	15	6	35	1.72
57045365--57045424	28	2.1	29	87	3	86	31	26	5	36	1.78
57045470--57045531	32	1.9	33	83	6	83	56	19	0	24	1.42
57048802--57048844	16	2.4	18	85	14	63	74	0	0	25	0.82
57051123--57051152	16	1.9	15	93	6	51	50	13	0	36	1.42
57054447--57054479	18	1.9	17	88	11	50	63	18	12	6	1.48
57054734--57054903	59	2.9	59	95	0	304	43	8	6	41	1.60
57054783--57054874	29	3.1	29	64	14	71	42	6	7	43	1.59
57054914--57054955	16	2.6	16	92	0	66	42	7	2	47	1.43
57054929--57054990	23	2.7	23	82	2	72	48	1	1	48	1.21
57057481--57057533	19	2.8	19	78	13	65	37	0	0	62	0.96
57057494--57057568	26	2.7	27	78	13	73	33	1	1	64	1.11
57057484--57057544	9	6.7	9	75	14	54	36	0	0	63	0.94
57058427--57058473	20	2.5	19	82	6	51	72	6	14	6	1.25
57062651--57062681	3	10.3	3	92	0	53	64	0	3	32	1.09
57062967--57063040	31	2.4	31	88	0	121	10	40	33	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57063278--57063329	24	2.1	25	83	16	65	78	0	5	15	0.92
57063294--57063331	19	1.9	19	89	5	58	81	0	5	13	0.85
57063809--57063902	45	2.1	45	95	0	170	35	25	8	30	1.86
57063999--57064062	32	2.0	32	100	0	128	31	18	3	46	1.65
57071987--57072029	14	3.1	14	86	6	52	13	11	0	74	1.07
57073441--57074569	563	2.0	563	99	0	2231	29	16	17	35	1.92
57080229--57080306	39	2.0	39	94	0	138	48	11	6	33	1.65
57082440--57082473	16	2.1	16	88	0	50	55	2	0	41	1.15
57082709--57082742	13	2.6	13	85	0	50	50	14	2	32	1.58
57083712--57083737	2	13.0	2	100	0	52	50	0	0	50	1.00
57084379--57084417	20	2.0	19	85	5	51	53	2	2	41	1.28
57085083--57085144	16	3.9	16	70	8	56	37	1	3	58	1.24
57085113--57085145	15	2.2	15	94	0	57	33	0	3	63	1.10
57085113--57085155	15	2.8	16	83	16	56	34	0	4	60	1.17
57086993--57087111	27	4.3	26	73	19	98	57	0	6	35	1.31
57087532--57087558	3	9.0	3	100	0	54	66	0	0	33	0.92
57091943--57092008	29	2.2	30	84	7	82	48	33	0	18	1.48
57093032--57093073	2	21.0	2	95	0	75	2	50	0	47	1.14
57093291--57093329	2	19.5	2	100	0	78	0	48	0	51	1.00
57099347--57099442	44	2.1	46	88	3	142	42	18	0	38	1.51
57099528--57099580	16	3.3	16	94	0	88	41	3	32	22	1.72
57099776--57099809	17	2.0	17	100	0	68	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57099842--57099881	20	2.0	21	85	5	55	60	5	0	35	1.19
57099849--57099928	28	2.8	28	81	11	92	56	1	0	42	1.07
57099860--57099961	44	2.3	41	75	16	98	50	4	0	44	1.30
57099756--57100015	117	2.3	113	87	10	358	50	3	1	43	1.31
57099971--57100035	32	2.0	32	81	0	76	47	3	0	49	1.17
57101517--57101551	15	2.3	15	100	0	70	42	11	5	40	1.65
57105660--57105720	26	2.2	28	82	8	81	65	0	0	34	0.93
57106113--57106159	21	2.2	22	88	3	69	63	4	0	31	1.13
57109763--57110061	91	3.1	99	81	13	304	46	3	3	47	1.33
57109728--57109986	91	2.8	91	98	0	491	47	3	2	47	1.32
57110136--57110177	15	2.7	16	82	14	52	45	0	2	52	1.13
57110127--57110168	15	2.9	15	82	10	52	47	0	0	52	1.00
57110393--57110460	16	4.2	16	96	0	127	38	35	0	26	1.57
57120990--57121121	36	3.6	36	66	18	94	24	19	21	34	1.97
57120985--57121274	76	3.9	76	79	3	309	24	18	22	33	1.97
57132991--57133102	33	3.4	32	75	6	91	23	26	18	31	1.98
57135878--57135902	4	6.2	4	100	0	50	48	0	0	52	1.00
57136369--57136394	8	3.2	8	100	0	52	38	23	0	38	1.55
57136400--57136458	13	4.1	14	69	18	50	25	23	1	49	1.60
57136400--57136485	42	2.0	42	86	4	120	24	22	2	51	1.60
57137684--57137740	9	6.7	9	75	16	50	24	7	1	66	1.26
57139803--57139851	25	1.9	26	87	4	73	30	8	2	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57139901--57139933	12	2.8	12	95	0	57	39	0	0	60	0.97
57141379--57141414	13	2.8	13	91	4	56	75	0	0	25	0.81
57141379--57141413	6	5.7	6	90	6	52	77	0	0	22	0.78
57141616--57141660	23	2.0	23	81	0	54	62	15	0	22	1.33
57141868--57141921	19	2.8	19	94	0	99	37	16	9	37	1.81
57141845--57141921	38	1.9	40	87	10	113	38	16	7	36	1.78
57142588--57143248	88	7.5	88	82	3	704	23	23	25	27	2.00
57142581--57143248	176	3.8	176	87	1	885	23	23	25	27	2.00
57149712--57149746	3	11.7	3	100	0	70	65	0	0	34	0.93
57149951--57149995	23	2.0	23	81	0	54	62	15	0	22	1.33
57150180--57150287	19	5.5	19	87	4	144	40	15	6	37	1.73
57150180--57150294	38	2.9	38	90	5	167	40	15	6	37	1.75
57150203--57150294	19	4.8	19	91	0	148	39	15	7	38	1.76
57150511--57150569	28	2.1	28	81	12	68	27	0	8	64	1.22
57150722--57150765	17	2.5	17	81	3	52	25	0	13	61	1.32
57154221--57154284	12	5.1	12	83	9	65	26	15	10	46	1.79
57154221--57154260	14	3.1	13	86	10	55	22	17	10	50	1.76
57163388--57163452	30	2.2	30	91	0	103	20	26	30	23	1.98
57163516--57163702	67	2.8	66	83	0	239	22	27	24	26	2.00
57166775--57166890	40	2.9	39	79	3	142	17	15	25	41	1.89
57169743--57169833	5	18.4	5	98	1	175	40	0	0	59	0.97
57170771--57170872	37	2.6	40	80	6	120	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57172554--57172587	17	2.0	17	88	0	50	41	5	17	35	1.74
57174507--57174799	145	2.0	145	98	0	568	30	23	8	37	1.85
57175800--57175880	4	20.2	4	97	0	153	50	23	0	25	1.49
57177761--57177822	20	3.2	20	74	2	63	66	1	8	24	1.28
57179261--57179889	132	4.8	132	83	2	681	26	24	18	30	1.98
57192325--57192386	20	3.2	20	74	2	63	66	1	6	25	1.25
57198386--57198459	24	3.0	25	68	28	66	39	4	2	54	1.34
57198939--57198999	30	2.1	28	82	11	70	32	3	9	54	1.50
57214536--57214577	21	2.0	22	85	4	59	40	2	2	54	1.26
57214887--57214937	21	2.4	22	80	9	61	62	1	0	35	1.06
57218730--57218767	19	2.1	19	90	5	60	39	0	2	57	1.12
57222113--57222166	17	3.3	17	72	17	60	16	9	1	72	1.19
57222120--57222166	14	3.1	15	74	14	51	17	10	0	72	1.12
57232138--57232167	16	1.9	15	93	6	51	53	0	0	46	1.00
57237284--57237309	6	4.3	6	100	0	52	50	0	50	0	1.00
57254180--57254243	20	3.2	19	79	16	67	46	9	6	37	1.61
57255874--57256031	44	3.3	51	86	7	188	29	22	13	34	1.93
57263105--57263143	20	2.0	20	85	10	53	41	12	0	46	1.42
57283676--57283742	32	2.1	32	100	0	134	37	25	13	23	1.92
57288630--57288673	21	2.1	21	86	0	61	27	0	4	68	1.09
57295521--57295556	18	2.0	18	100	0	72	16	11	33	38	1.84
57296772--57296839	34	2.0	34	100	0	136	44	20	17	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57298518--57298542	13	1.9	13	100	0	50	48	0	12	40	1.40
57298597--57298636	19	2.1	19	86	9	55	55	5	5	35	1.44
57299146--57299261	61	1.9	58	80	11	128	43	4	5	46	1.45
57301874--57301924	21	2.4	21	86	0	66	70	3	0	25	1.04
57305730--57305759	9	3.3	9	90	0	51	30	3	13	53	1.56
57309176--57309227	26	2.0	26	88	0	77	26	34	17	21	1.95
57310740--57310799	30	2.0	30	83	3	75	41	0	38	20	1.52
57311021--57311075	9	6.1	9	91	0	92	29	12	12	45	1.79
57314434--57314657	110	2.0	110	89	0	340	37	16	16	29	1.91
57317117--57317173	29	2.0	29	89	6	89	43	0	3	52	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211