genome.fa.s14.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  146  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43408876--43409154	41	6.8	40	84	5	337	22	19	29	29	1.98
43408876--43409138	123	2.1	124	88	2	386	21	19	29	29	1.97
43410659--43410686	6	4.7	6	100	0	56	0	0	14	85	0.59
43410951--43410977	14	1.9	14	100	0	54	44	0	48	7	1.31
43412189--43412259	32	2.2	33	90	10	110	14	4	12	69	1.34
43414668--43414978	43	7.3	43	79	7	269	22	15	30	31	1.95
43414733--43414980	86	2.9	86	85	4	331	21	16	30	31	1.95
43415977--43416075	25	4.2	25	70	17	93	45	14	0	40	1.44
43415977--43416120	70	2.1	70	91	0	234	45	12	0	41	1.42
43416045--43416139	45	2.1	45	82	3	120	49	10	0	40	1.37
43417218--43417243	7	3.7	7	100	0	52	57	15	0	26	1.38
43417408--43417451	20	2.1	21	84	12	56	50	6	0	43	1.29
43418443--43418519	11	6.9	11	80	14	79	44	0	31	24	1.54
43418443--43418519	22	3.5	22	83	16	97	44	0	31	24	1.54
43418445--43418518	34	2.2	35	85	7	100	43	0	32	24	1.55
43418971--43419068	39	2.5	37	85	9	115	65	5	1	28	1.20
43419094--43419178	27	3.3	25	85	8	116	65	3	1	29	1.16
43419752--43419787	17	2.1	17	89	0	54	16	36	36	11	1.84
43419966--43420015	6	8.3	6	78	14	50	82	0	4	14	0.82
43419966--43420012	25	1.9	25	87	12	71	82	0	4	12	0.80
43420838--43420890	27	2.0	27	92	0	88	33	15	24	26	1.95
43425327--43425396	35	2.0	35	97	0	131	27	8	27	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43428045--43428098	26	2.1	26	100	0	108	40	14	11	33	1.82
43428309--43428333	13	1.9	13	100	0	50	92	8	0	0	0.40
43440565--43440692	29	4.4	29	85	1	150	39	17	19	23	1.93
43440541--43440692	58	2.6	58	86	1	189	39	19	18	23	1.92
43440532--43440724	58	3.3	57	80	7	176	38	19	17	24	1.93
43440558--43440733	29	6.1	29	80	5	124	37	19	16	26	1.93
43441551--43441634	42	2.0	42	100	0	168	38	16	16	28	1.91
43447231--43447269	17	2.2	17	86	4	51	46	0	15	38	1.46
43448389--43448434	22	2.1	22	84	4	58	21	8	4	65	1.38
43451759--43451806	23	2.1	23	92	0	78	45	6	29	18	1.74
43458092--43458145	28	2.0	27	85	3	72	25	25	14	33	1.95
43460449--43460565	28	4.2	27	75	4	117	29	18	20	30	1.97
43462345--43462392	20	2.3	20	82	10	53	41	20	27	10	1.85
43472801--43472914	29	3.9	29	67	14	74	29	17	17	35	1.93
43472813--43473155	29	11.7	29	68	15	77	29	14	19	36	1.91
43474681--43474752	22	3.6	21	68	22	64	13	15	29	41	1.85
43474622--43474773	76	2.0	76	84	2	198	15	17	27	39	1.90
43474622--43474773	38	4.0	38	84	0	178	15	17	27	39	1.90
43477988--43478048	30	2.0	32	87	6	90	45	6	1	45	1.39
43488410--43488445	19	1.9	19	88	5	56	58	0	2	38	1.13
43491841--43491900	9	6.4	9	75	12	59	56	1	0	41	1.09
43491841--43491909	19	3.6	19	73	11	52	57	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43491861--43491909	20	2.5	20	87	9	66	59	0	0	40	0.98
43491855--43491920	18	3.6	18	77	15	64	57	1	1	39	1.17
43494259--43494386	44	3.0	41	75	10	114	25	15	25	33	1.95
43506019--43506163	32	4.6	32	80	4	168	40	20	19	20	1.92
43506236--43506290	24	2.3	23	78	9	65	45	21	10	21	1.82
43506330--43506695	27	13.6	27	84	0	428	24	19	19	36	1.95
43507918--43507957	12	3.3	12	83	10	55	32	45	0	22	1.53
43519524--43519561	5	7.4	5	83	16	51	36	0	2	60	1.11
43519524--43519561	16	2.5	15	84	16	51	36	0	2	60	1.11
43523976--43524226	33	7.4	33	67	26	141	32	29	21	17	1.96
43523965--43524227	102	2.6	104	91	1	433	31	29	21	17	1.96
43525239--43525288	21	2.4	21	89	0	82	20	38	24	18	1.93
43529659--43529730	29	2.6	28	85	10	96	29	12	25	33	1.92
43529775--43529929	29	5.4	29	81	0	150	29	14	20	35	1.93
43529766--43529927	87	1.9	86	82	1	207	31	14	19	35	1.91
43544667--43544700	16	2.2	15	89	5	50	55	0	0	44	0.99
43557009--43557044	18	2.0	18	94	0	63	36	11	19	33	1.87
43564594--43564628	18	1.9	18	94	0	61	31	0	37	31	1.58
43564597--43564638	21	2.0	21	85	0	57	35	0	33	30	1.58
43564988--43565021	17	2.0	17	88	0	50	20	17	5	55	1.62
43571751--43572181	144	3.0	144	93	1	731	31	14	19	34	1.92
43575357--43575404	25	1.9	25	82	0	60	33	27	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43575364--43575451	25	3.5	25	84	6	99	32	27	14	25	1.95
43577163--43577215	25	2.1	25	85	0	70	26	22	16	33	1.96
43581597--43581653	29	2.0	29	96	0	105	35	5	8	50	1.56
43581609--43581668	29	2.1	29	80	0	66	31	8	11	48	1.69
43593669--43593710	21	2.0	21	90	4	66	57	26	0	16	1.40
43595912--43595974	18	3.6	18	71	4	65	42	4	15	36	1.69
43595908--43595978	35	2.0	35	94	0	124	43	5	18	32	1.73
43606161--43606216	7	7.7	7	76	7	58	60	0	0	39	0.97
43606168--43606214	15	3.1	15	78	3	58	63	0	0	36	0.94
43607623--43607654	15	2.1	16	88	11	50	25	0	0	75	0.81
43607709--43607774	30	2.3	27	87	12	89	60	1	0	37	1.06
43615804--43615978	46	3.8	46	82	3	201	29	18	20	32	1.96
43615805--43615977	91	1.9	91	85	2	240	28	18	19	32	1.96
43617744--43617799	28	2.0	28	92	0	94	30	23	1	44	1.63
43620268--43620299	16	2.0	16	93	0	55	25	15	0	59	1.36
43620527--43620717	51	3.8	50	80	4	231	31	27	15	25	1.96
43620525--43620709	101	1.8	102	89	3	293	31	27	16	24	1.96
43620519--43620743	101	2.2	102	82	3	276	30	28	15	25	1.96
43622102--43622131	10	2.9	10	95	5	51	13	6	30	50	1.67
43624221--43624287	29	2.3	29	94	5	118	32	23	11	31	1.91
43628881--43628913	17	1.9	17	88	11	50	18	9	3	69	1.28
43631632--43631721	35	2.6	35	85	7	112	40	17	16	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43631659--43631733	35	2.1	35	85	4	98	45	16	13	25	1.83
43647290--43647330	20	2.0	20	85	0	55	24	14	7	53	1.66
43651404--43651447	18	2.4	18	88	0	61	40	38	2	18	1.63
43651542--43651619	9	8.7	9	81	9	97	26	7	20	44	1.78
43651818--43651850	16	2.1	16	100	0	66	33	24	0	42	1.55
43654199--43654272	20	3.7	20	73	8	62	58	4	8	29	1.46
43654549--43654607	21	2.8	21	75	14	59	5	10	6	77	1.10
43656267--43656325	27	2.2	27	78	3	66	32	1	1	64	1.13
43660661--43660867	94	2.2	94	85	3	274	16	19	23	40	1.91
43667908--43667945	18	2.2	18	85	4	51	57	10	0	31	1.32
43675098--43675132	18	1.9	18	88	0	52	28	17	11	42	1.83
43675998--43676031	17	2.0	17	100	0	68	47	35	11	5	1.65
43680053--43680098	24	1.9	24	100	0	92	41	13	8	36	1.75
43681703--43681819	54	2.2	54	79	3	137	28	28	17	25	1.98
43707618--43707658	22	1.9	22	85	14	59	56	21	0	21	1.43
43708641--43708722	43	1.9	43	82	5	103	34	26	18	20	1.96
43709995--43710025	11	2.8	11	95	0	53	6	45	9	38	1.63
43729382--43729552	51	3.4	51	90	1	245	29	24	12	32	1.93
43729448--43729525	25	3.1	25	64	29	65	30	23	12	33	1.92
43736957--43737279	51	6.4	50	80	7	339	30	24	14	30	1.94
43736989--43737283	102	2.9	102	93	1	486	30	23	15	30	1.95
43736990--43737275	153	1.9	152	86	3	405	30	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43739999--43740079	40	2.0	40	85	0	108	23	27	19	29	1.98
43762737--43762787	19	2.7	19	84	0	75	17	7	15	58	1.60
43768915--43768951	18	2.0	19	89	5	58	59	0	0	40	0.97
43770931--43770958	12	2.3	12	100	0	56	46	14	0	39	1.44
43786053--43786081	11	2.5	12	94	5	51	17	27	0	55	1.42
43786248--43786289	20	2.0	22	90	9	70	23	4	0	71	1.05
43786260--43786306	16	3.0	16	81	6	60	27	2	0	70	0.99
43786258--43786304	20	2.3	21	85	3	60	25	2	0	72	0.96
43788221--43788411	93	2.1	92	94	1	337	36	3	5	55	1.38
43788359--43788414	25	2.3	24	76	11	60	41	0	5	53	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211