genome.fa.s14.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  39  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10298328--10298364	9	4.2	9	93	3	58	59	8	0	32	1.27
10298367--10298488	25	5.1	24	76	15	128	44	12	0	43	1.41
10298345--10298494	69	2.2	69	91	4	250	48	10	0	41	1.38
10298906--10298942	17	2.1	18	95	5	67	40	10	27	21	1.86
10299593--10299617	7	3.6	7	100	0	50	60	12	0	28	1.32
10300757--10300882	51	2.4	53	86	2	184	45	0	25	28	1.59
10300862--10300897	11	3.2	11	88	4	54	44	0	36	19	1.51
10301326--10301366	17	2.4	17	88	11	66	48	0	9	41	1.36
10306284--10306344	24	2.5	25	82	10	74	4	32	4	57	1.41
10308713--10308773	27	2.3	27	100	0	122	40	3	13	42	1.60
10314034--10314063	10	3.0	10	95	0	51	80	13	6	0	0.91
10314797--10314848	21	2.5	21	81	15	63	51	0	3	44	1.19
10314869--10314904	18	2.1	18	89	5	56	25	0	0	75	0.81
10314998--10315069	36	2.0	36	97	0	135	29	22	20	27	1.99
10316214--10316282	31	2.2	33	84	5	88	43	14	14	27	1.84
10322434--10322477	22	2.0	22	86	0	61	45	2	2	50	1.27
10323755--10323832	10	8.0	9	77	20	70	41	6	2	50	1.42
10346221--10346270	24	2.1	23	82	10	57	36	2	4	58	1.29
10346228--10346311	40	2.1	39	80	12	91	40	2	3	53	1.31
10360467--10360555	18	4.9	18	87	0	106	33	14	21	30	1.93
10360467--10360555	36	2.5	36	86	0	124	33	14	21	30	1.93
10361908--10361949	20	2.1	20	86	0	57	47	0	7	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10365819--10365930	43	2.6	43	77	13	131	23	20	28	27	1.99
10366846--10367012	23	7.1	23	75	4	163	24	18	16	40	1.91
10366832--10367025	47	4.1	47	95	0	334	23	17	17	41	1.89
10366832--10367000	24	7.2	24	75	4	182	24	18	15	40	1.90
10366832--10367060	94	2.4	94	88	1	289	25	17	17	40	1.90
10366832--10367094	141	1.9	139	79	7	298	25	17	16	40	1.90
10370329--10370450	42	2.9	43	81	13	146	18	21	30	29	1.97
10371114--10371147	2	17.0	2	93	0	59	52	0	0	47	1.00
10372451--10372511	32	1.9	32	83	12	81	49	1	4	44	1.33
10372470--10372511	20	2.1	20	86	0	57	47	0	7	45	1.30
10376223--10376286	30	2.2	30	94	2	112	25	3	14	57	1.51
10382957--10383183	116	2.0	116	91	1	366	35	21	14	28	1.93
10388104--10388150	19	2.5	20	80	19	57	61	0	0	38	0.96
10388939--10388984	18	2.6	18	77	19	51	41	6	0	52	1.27
10391350--10391392	19	2.4	18	88	11	63	60	0	0	39	0.97
10394854--10394908	23	2.3	25	81	15	71	36	0	0	63	0.95
10394857--10394907	24	2.2	24	86	10	70	35	0	0	64	0.94
10396640--10396686	26	1.9	23	87	12	67	34	0	2	63	1.06
10396645--10396698	18	3.1	17	76	17	58	33	0	1	64	1.04
10397620--10397686	31	2.2	31	83	0	80	32	13	10	43	1.78
10404740--10404772	2	16.5	2	100	0	66	51	48	0	0	1.00
10410244--10410336	43	2.1	43	88	2	132	45	22	9	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10414216--10414247	10	3.4	10	83	16	50	34	25	6	34	1.81
10419659--10419694	9	4.0	9	88	0	54	41	0	33	25	1.55
10420794--10420987	41	4.7	41	78	5	196	17	22	21	38	1.93
10420792--10420987	82	2.4	81	93	5	331	17	22	20	38	1.93
10422114--10422150	10	3.7	10	92	0	65	43	0	13	43	1.44
10422218--10422269	27	1.9	27	88	0	77	40	0	9	50	1.35
10423500--10423537	17	2.2	17	100	0	76	36	21	15	26	1.93
10424819--10424889	29	2.4	29	95	0	133	42	12	7	38	1.70
10425137--10425271	9	15.2	9	73	11	91	47	18	2	31	1.61
10425167--10425221	25	2.2	25	86	0	74	47	20	1	30	1.60
10425186--10425496	9	34.4	9	67	22	50	49	12	2	35	1.55
10425284--10425643	31	11.6	31	74	17	288	47	11	2	38	1.53
10425399--10425496	22	4.7	21	68	21	71	50	11	3	35	1.54
10425522--10425573	16	3.1	16	88	5	77	46	21	0	32	1.52
10425522--10425573	9	6.2	9	78	17	67	46	21	0	32	1.52
10425418--10425717	163	1.8	165	85	8	421	46	13	2	38	1.57
10425688--10425798	16	6.7	16	69	15	66	42	17	0	39	1.55
10425737--10425820	9	9.8	9	69	14	61	44	17	1	36	1.57
10431328--10431498	66	2.6	65	85	4	209	39	19	28	13	1.89
10431470--10431541	21	3.4	21	82	3	74	34	19	41	4	1.71
10431480--10431581	42	2.4	41	83	6	123	35	16	43	4	1.70
10431490--10431581	21	4.4	21	80	2	96	34	16	43	5	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10431745--10431774	9	3.2	9	90	9	51	30	0	3	66	1.07
10431927--10432114	43	4.3	43	78	8	148	23	22	26	26	2.00
10431999--10432266	86	3.1	85	88	5	353	31	27	19	22	1.97
10431999--10432266	43	6.2	43	82	6	310	31	27	19	22	1.97
10432048--10432266	86	2.6	85	96	0	375	33	28	17	20	1.95
10432434--10432477	22	2.0	22	95	0	79	43	27	20	9	1.82
10437803--10437831	8	3.8	8	95	4	51	20	0	0	79	0.74
10438235--10438366	43	3.1	43	93	2	230	27	34	18	20	1.96
10439482--10439510	14	2.1	14	100	0	58	51	0	13	34	1.42
10442327--10442438	55	2.0	55	100	0	224	41	14	7	37	1.73
10443097--10443158	21	2.9	21	75	15	65	38	37	0	24	1.56
10443262--10443317	14	3.9	15	86	6	80	39	33	3	23	1.72
10443262--10443317	29	1.9	29	89	7	87	39	33	3	23	1.72
10443267--10443327	29	2.1	28	85	8	79	37	36	3	22	1.71
10443973--10444195	123	1.8	123	86	4	324	30	25	23	20	1.98
10443974--10444195	82	2.7	82	88	0	300	30	25	23	20	1.98
10443974--10444195	41	5.4	41	84	2	230	30	25	23	20	1.98
10455039--10455093	18	3.0	18	83	2	65	47	1	1	49	1.23
10455303--10455329	11	2.5	11	100	0	54	7	0	0	92	0.38
10455405--10455433	9	3.2	9	100	0	58	44	34	0	20	1.52
10456028--10456064	6	5.8	6	90	9	56	48	16	16	18	1.81
10456039--10456193	45	3.4	44	82	3	193	42	18	17	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10456381--10456466	40	2.2	40	83	6	104	40	19	5	33	1.76
10459651--10459691	3	13.7	3	100	0	82	0	31	0	68	0.90
10461483--10461788	46	6.4	46	75	15	226	28	22	15	33	1.94
10461523--10461650	62	2.0	64	89	5	199	29	24	11	34	1.91
10461483--10461696	108	2.0	107	93	0	365	28	23	14	33	1.94
10461587--10461791	46	4.5	46	95	2	353	28	22	15	33	1.95
10475365--10475425	22	2.8	22	76	0	59	8	11	11	68	1.38
10475353--10475414	33	1.9	32	86	3	88	6	8	14	70	1.30
10475357--10475426	33	2.2	33	81	2	79	7	10	12	70	1.34
10476528--10476621	19	4.8	19	79	5	116	38	10	17	34	1.84
10476528--10476628	40	2.6	37	80	8	114	38	9	16	34	1.82
10477932--10478126	98	2.0	98	94	0	345	28	10	23	37	1.88
10482213--10482251	20	1.9	21	94	5	71	79	0	20	0	0.73
10482209--10482264	20	2.8	20	83	5	69	78	0	17	3	0.89
10483579--10483787	44	4.8	44	65	11	113	30	18	25	25	1.98
10483473--10484094	132	4.7	132	91	1	969	31	18	23	25	1.97
10484082--10484957	44	20.2	44	70	16	422	30	19	22	27	1.98
10484082--10484962	217	4.1	217	95	0	1512	30	19	22	27	1.98
10484444--10484779	173	1.9	174	80	9	384	30	20	22	27	1.98
10485165--10485237	19	3.8	19	85	0	110	36	9	17	35	1.83
10486544--10486738	98	2.0	98	96	0	363	28	10	24	36	1.88
10491133--10491194	31	2.0	31	90	0	97	38	11	6	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10496031--10496205	96	1.8	96	82	0	224	31	32	15	21	1.94
10496116--10497066	120	7.9	120	85	1	1044	28	29	14	27	1.96
10501118--10501160	18	2.4	18	88	7	61	53	0	0	46	1.00
10505387--10506366	489	2.0	489	93	0	1681	27	15	24	32	1.95
10510246--10510324	30	2.7	29	78	7	79	51	1	3	43	1.27
10512092--10512118	1	27.0	1	100	0	54	100	0	0	0	0.00
10523033--10523079	24	2.0	24	86	0	67	17	10	6	65	1.43
10523309--10523899	196	3.0	196	94	0	1031	34	20	18	26	1.96
10523934--10524049	14	8.1	14	70	16	53	6	30	1	62	1.29
10524931--10525054	3	43.0	3	79	12	127	2	28	1	67	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211