genome.fa.s14.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  11  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3129152--3129209	30	1.9	30	85	0	80	58	5	6	29	1.46
3132168--3132209	18	2.3	18	91	0	66	26	0	2	71	0.98
3141280--3141378	51	1.9	52	89	4	155	44	3	12	40	1.57
3144486--3144532	21	2.2	22	92	3	78	21	38	19	21	1.94
3149196--3149405	92	2.3	91	85	4	271	45	3	4	46	1.41
3149333--3149380	26	1.9	25	84	16	64	45	0	2	52	1.12
3149547--3149598	15	3.6	15	80	12	56	44	0	1	53	1.11
3149667--3149718	15	3.6	15	80	12	56	44	0	1	53	1.11
3149421--3149834	120	3.4	120	95	2	726	42	2	5	49	1.38
3149796--3149837	15	2.7	16	82	14	52	45	0	2	52	1.13
3149787--3149828	15	2.9	15	82	10	52	47	0	0	52	1.00
3149771--3150083	153	2.0	156	92	2	524	46	5	4	43	1.45
3150206--3150257	16	3.2	16	97	0	95	40	34	0	25	1.56
3151439--3151496	29	2.0	29	90	6	91	55	10	0	34	1.34
3151519--3151604	27	3.2	27	91	0	127	31	23	30	15	1.95
3151528--3151606	27	2.9	27	94	0	131	31	20	32	15	1.93
3152158--3152221	18	3.5	18	80	4	83	45	0	12	42	1.42
3152145--3152240	37	2.6	37	94	0	165	48	0	12	38	1.41
3152145--3152240	19	5.2	19	74	5	97	48	0	12	38	1.41
3152145--3152260	37	3.1	37	85	7	121	48	3	10	37	1.54
3152351--3152412	27	2.3	27	94	0	106	50	0	6	43	1.28
3156660--3156729	22	3.3	22	69	15	74	38	5	25	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3156648--3156731	42	2.0	42	100	0	168	38	4	26	30	1.77
3156656--3156721	20	3.2	20	68	16	62	39	4	25	30	1.76
3156775--3156804	14	2.1	14	100	0	60	43	13	16	26	1.85
3157544--3157600	30	2.0	29	86	6	80	26	28	29	15	1.96
3158924--3159010	45	1.9	45	95	4	158	25	18	9	47	1.78
3159544--3159614	8	9.2	8	83	13	80	50	0	0	49	1.00
3159544--3159653	51	2.1	52	81	9	127	50	1	1	46	1.22
3159705--3159744	17	2.4	16	79	4	53	72	0	27	0	0.85
3159710--3159750	21	1.9	22	90	5	66	75	0	24	0	0.80
3161461--3161519	29	2.0	30	84	15	79	27	1	5	66	1.22
3161569--3161602	17	1.9	18	88	5	52	38	8	0	52	1.33
3161821--3161875	3	18.3	3	100	0	110	32	0	0	67	0.91
3164070--3164265	51	3.9	51	81	6	229	22	17	29	30	1.97
3164074--3164258	101	1.8	101	89	5	293	22	17	28	31	1.96
3171865--3171895	15	2.1	15	100	0	62	32	12	19	35	1.90
3173705--3174073	103	3.6	103	90	2	510	30	28	21	18	1.97
3181973--3182059	45	1.9	45	95	4	158	25	18	9	47	1.78
3182589--3182645	30	1.9	31	89	10	93	49	1	3	45	1.29
3182702--3182767	25	2.6	25	85	0	87	71	3	24	1	1.09
3182714--3182767	4	13.0	4	80	7	63	74	3	22	0	0.98
3182714--3182767	21	2.6	21	82	5	65	74	3	22	0	0.98
3183635--3183745	41	2.8	40	79	9	138	26	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3183636--3183738	37	2.7	38	81	6	118	27	17	23	32	1.97
3192348--3192422	27	2.8	27	83	4	89	20	21	33	25	1.97
3192490--3192526	16	2.4	16	90	4	58	59	5	2	32	1.34
3192750--3193083	27	12.8	27	87	6	485	53	14	0	32	1.43
3192750--3193074	77	4.2	75	92	6	458	53	14	0	32	1.43
3192750--3193081	104	3.2	103	86	8	492	53	14	0	31	1.43
3192795--3193031	19	12.5	19	67	23	108	53	13	0	32	1.44
3193062--3193407	61	5.4	61	82	12	431	57	11	0	30	1.37
3193100--3193285	80	2.3	80	83	5	234	58	11	0	30	1.37
3193184--3193224	19	2.2	19	90	0	64	48	17	0	34	1.47
3193057--3193514	141	3.2	141	82	9	529	56	11	0	31	1.37
3192976--3193495	202	2.5	210	83	10	680	56	11	0	31	1.37
3193123--3193293	80	2.2	79	90	3	247	56	13	0	29	1.42
3193304--3193409	34	3.3	34	69	17	118	58	9	0	32	1.30
3193386--3193517	19	6.3	19	74	19	120	53	11	0	34	1.37
3193386--3193517	46	3.0	44	84	10	189	53	11	0	34	1.37
3193400--3193455	27	2.1	27	93	0	94	55	10	0	33	1.35
3193366--3193504	42	3.2	42	84	11	199	54	8	0	36	1.31
3193632--3193697	30	2.2	28	73	19	71	53	1	1	43	1.19
3195577--3195609	12	2.8	12	95	0	57	6	0	72	21	1.05
3197635--3197672	20	1.9	20	88	0	58	39	13	2	44	1.57
3202327--3202374	23	2.1	23	100	0	96	58	0	4	37	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3205731--3205796	31	2.1	31	88	0	96	37	9	10	42	1.71
3206639--3206685	24	2.0	24	83	8	60	44	17	2	36	1.60
3207702--3207966	103	2.6	104	91	0	424	29	30	21	19	1.97
3208294--3208358	30	2.2	29	81	8	76	30	27	6	35	1.81
3208301--3208358	30	1.9	30	85	0	80	31	24	6	37	1.82
3215226--3215275	26	1.9	26	95	0	91	30	32	24	14	1.94
3215193--3215455	102	2.6	103	91	2	413	30	30	20	19	1.97
3215783--3215847	30	2.2	29	81	8	76	30	27	6	35	1.81
3215790--3215847	30	1.9	30	85	0	80	31	24	6	37	1.82
3219901--3219944	19	2.3	20	84	7	56	27	20	11	40	1.86
3223990--3224338	86	4.1	86	91	1	520	26	22	23	27	2.00
3224076--3224206	41	3.1	41	63	18	106	27	22	24	25	2.00
3223990--3224338	171	2.0	173	88	1	522	26	22	23	27	2.00
3224395--3224707	46	6.9	46	68	11	223	25	19	24	29	1.98
3224286--3224713	136	3.2	136	95	2	740	26	19	23	30	1.98
3224309--3224704	90	4.4	93	68	9	234	26	19	24	28	1.99
3224682--3225183	44	11.4	43	76	6	386	26	16	26	30	1.97
3224692--3225183	132	3.7	132	91	1	752	26	16	26	30	1.97
3230970--3231280	61	5.2	61	66	14	232	43	2	6	47	1.44
3231031--3231219	59	3.2	58	67	14	150	42	3	5	49	1.41
3231083--3231276	69	3.1	69	62	25	181	42	2	7	47	1.42
3230959--3231317	120	3.0	120	95	0	637	42	2	6	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3231154--3231195	15	2.8	16	85	10	61	45	0	4	50	1.23
3231531--3231598	16	4.2	16	96	0	127	38	35	0	26	1.57
3235704--3235754	24	2.1	24	88	0	75	17	31	23	27	1.97
3235714--3235759	24	1.9	24	90	0	74	17	34	23	23	1.96
3238060--3238100	18	2.3	18	87	8	57	36	4	14	43	1.67
3250500--3250540	20	2.0	20	86	9	57	14	7	39	39	1.74
3250475--3250538	34	1.9	33	84	9	85	15	7	35	40	1.76
3255284--3255309	7	3.7	7	100	0	52	73	0	0	26	0.84
3256008--3256042	18	1.9	18	88	0	52	45	2	5	45	1.41
3259415--3259499	44	1.9	45	81	11	104	42	10	7	40	1.67
3260646--3260693	3	16.0	3	100	0	96	33	0	0	66	0.92
3265739--3265769	13	2.5	13	94	5	55	32	0	3	64	1.09
3283620--3283907	153	1.9	152	78	5	319	42	11	15	31	1.82
3291039--3291091	17	3.3	17	75	24	60	39	1	9	49	1.46
3291037--3291090	14	3.2	18	73	24	55	38	1	9	50	1.45
3291379--3291403	12	2.1	12	100	0	50	56	0	0	44	0.99
3292300--3292340	19	2.2	19	90	0	64	26	0	17	56	1.41
3294013--3294060	18	2.5	19	80	16	55	33	2	2	62	1.18
3294035--3294096	18	3.4	18	72	14	56	30	3	1	64	1.19
3294140--3294215	38	2.1	36	85	5	98	39	3	0	56	1.18
3294178--3294213	16	2.2	17	90	5	56	30	2	0	66	1.06
3295070--3295112	19	2.3	19	92	4	70	39	0	4	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301243--3301282	22	1.9	22	85	10	57	27	35	15	22	1.94
3309401--3309466	31	2.1	31	85	0	87	27	6	10	56	1.57
3310615--3310657	18	2.4	18	80	7	52	51	0	2	46	1.13
3326064--3326101	19	2.0	19	100	0	76	47	15	10	26	1.78
3327198--3327225	14	2.0	14	100	0	56	57	7	21	14	1.61
3334262--3334308	22	2.2	21	82	17	62	55	2	0	42	1.12
3335110--3335225	58	2.0	57	88	5	171	42	8	6	42	1.62
3335121--3335249	59	2.2	59	82	6	149	40	8	7	43	1.64
3338534--3338558	6	4.2	6	100	0	50	16	32	16	36	1.90
3343204--3343250	21	2.2	22	92	3	78	21	19	38	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211