genome.fa.s14.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  169  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49932663--49932703	22	1.9	21	85	5	55	34	2	12	51	1.52
49938649--49938972	110	2.9	111	92	4	550	38	16	16	29	1.90
49939351--49939494	72	2.0	72	89	1	218	42	13	16	27	1.86
49941015--49941050	2	18.0	2	100	0	72	50	0	50	0	1.00
49942659--49942708	25	2.0	26	84	11	68	54	0	6	40	1.25
49947210--49947610	51	7.9	51	77	8	338	30	26	16	25	1.96
49947210--49947610	101	4.0	101	78	7	375	30	26	16	25	1.96
49947260--49947610	152	2.3	152	94	0	630	30	27	16	25	1.97
49951387--49951432	18	2.6	18	78	0	56	47	0	2	50	1.13
49952329--49952385	29	1.9	30	85	3	80	29	7	14	49	1.69
49952577--49952635	31	2.0	30	86	6	84	42	15	10	32	1.80
49952572--49952638	31	2.3	27	80	14	80	40	13	10	35	1.79
49954749--49954792	22	2.2	20	84	12	54	56	11	0	31	1.35
49956755--49956845	31	3.0	29	85	10	112	57	0	3	39	1.15
49956755--49956838	11	8.1	10	73	15	64	54	0	3	41	1.17
49956803--49956889	39	2.2	39	93	0	147	65	0	3	31	1.09
49963063--49963108	19	2.4	20	70	23	53	43	0	2	54	1.12
49963744--49963806	30	2.1	30	93	0	108	58	15	3	22	1.51
49966681--49966730	13	3.8	14	79	10	52	20	0	22	58	1.40
49967805--49967925	43	2.8	43	74	12	131	19	19	30	30	1.96
49972085--49972137	23	2.3	23	100	0	106	20	16	20	41	1.90
49980816--49981086	43	6.3	43	80	5	253	26	30	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49980832--49981066	86	2.7	86	85	1	319	25	31	19	24	1.98
49980832--49981086	129	2.0	129	85	3	343	25	31	18	23	1.98
49982451--49982485	16	2.2	16	94	0	61	60	14	11	14	1.60
49984373--49984401	15	1.9	15	100	0	58	27	17	20	34	1.95
49986044--49986103	10	5.7	11	75	18	56	46	5	0	48	1.24
49986037--49986111	29	2.5	29	81	12	82	48	5	1	45	1.33
49986037--49986109	30	2.4	30	82	8	87	49	4	1	45	1.29
49986044--49986106	20	3.1	20	77	11	74	44	4	0	50	1.23
49986501--49986556	7	8.1	7	76	11	53	39	37	1	21	1.64
49987355--49987582	41	5.6	41	89	0	357	28	24	23	22	1.99
49989937--49990078	27	5.3	27	79	2	144	43	19	17	19	1.88
49990404--49990462	30	1.9	31	89	3	93	18	27	23	30	1.98
49997998--49998123	26	4.9	26	89	0	182	31	21	14	32	1.93
50008028--50008235	91	2.3	91	93	0	344	46	3	4	46	1.39
50008150--50008210	28	2.2	28	85	5	81	45	0	3	50	1.17
50008068--50008210	44	3.2	43	69	20	121	46	2	3	48	1.31
50008262--50008570	59	5.2	58	68	20	217	42	3	4	49	1.42
50008251--50008652	120	3.3	120	96	0	734	43	3	4	48	1.40
50008372--50008406	18	2.0	17	88	5	52	45	0	0	54	0.99
50022288--50022341	23	2.3	23	77	0	63	22	12	24	40	1.89
50027885--50027929	18	2.5	18	85	7	56	44	20	17	17	1.87
50028690--50028774	38	2.3	37	81	4	98	32	16	27	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50028874--50028910	18	2.1	18	100	0	74	16	16	40	27	1.89
50028995--50029073	23	3.4	23	80	3	79	27	11	25	35	1.90
50029011--50029081	23	3.1	23	79	4	72	28	11	23	36	1.89
50056054--50056085	12	2.6	12	95	5	55	12	15	0	71	1.14
50074440--50074491	24	2.2	24	85	0	68	50	7	3	38	1.50
50079276--50079306	16	1.9	16	100	0	62	51	0	9	38	1.35
50081328--50081368	16	2.6	16	88	0	55	41	2	29	26	1.69
50081549--50081709	60	2.7	60	79	10	177	52	4	0	42	1.25
50082812--50082922	28	4.1	28	74	13	99	18	12	17	51	1.76
50108315--50108685	103	3.6	105	89	4	549	30	30	19	19	1.96
50109012--50109074	30	2.1	30	84	0	81	33	22	6	38	1.79
50115902--50115946	21	2.1	21	100	0	90	60	4	26	8	1.46
50117843--50117895	24	2.3	23	93	3	88	54	0	1	43	1.11
50125558--50125750	106	1.8	106	91	0	323	34	23	13	27	1.93
50134062--50134105	15	2.8	17	74	19	51	22	22	0	54	1.45
50136747--50136938	44	4.4	44	85	0	242	41	13	11	34	1.80
50138845--50138893	25	2.0	25	84	4	64	44	20	22	12	1.84
50139046--50139195	65	2.3	65	91	0	246	35	22	20	22	1.96
50142695--50142854	41	3.9	41	94	0	284	28	24	20	26	1.99
50157168--50157302	41	3.3	41	77	5	139	32	20	22	23	1.98
50157029--50157566	278	1.9	278	93	0	934	32	20	20	26	1.97
50157460--50157640	41	4.4	41	84	0	193	36	22	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50157698--50157801	44	2.4	44	86	0	145	18	31	7	42	1.78
50157778--50157819	18	2.3	18	87	0	57	11	38	0	50	1.40
50160259--50160298	13	2.8	15	78	21	50	30	2	5	62	1.29
50160340--50160372	12	2.5	14	80	19	52	30	0	0	69	0.88
50160740--50160769	13	2.2	13	94	5	51	43	0	0	56	0.99
50160740--50160769	7	4.4	7	91	8	53	43	0	0	56	0.99
50163847--50165479	818	2.0	818	94	0	2851	33	14	16	35	1.90
50167671--50167808	66	2.1	66	84	2	179	44	18	23	13	1.85
50171385--50171430	2	23.0	2	100	0	92	0	50	0	50	1.00
50175069--50175115	6	7.8	6	86	9	69	53	0	29	17	1.44
50175071--50175116	24	1.9	24	95	0	83	52	0	30	17	1.45
50180913--50180940	14	2.0	14	100	0	56	42	21	21	14	1.88
50182417--50182460	23	1.9	23	90	9	72	43	20	4	31	1.72
50182947--50182976	11	2.6	11	94	5	51	20	0	0	80	0.72
50186715--50186763	20	2.5	20	75	15	57	12	22	6	59	1.55
50186968--50187095	49	2.6	49	78	10	127	23	26	20	29	1.99
50186966--50187145	50	3.6	50	78	8	172	22	27	21	28	1.99
50187061--50187156	50	1.9	50	89	0	147	17	31	23	27	1.97
50192812--50192927	15	7.5	15	65	24	62	7	17	12	62	1.53
50192812--50192947	33	4.3	33	80	12	185	8	18	13	60	1.57
50192827--50192881	18	3.2	18	71	23	64	9	16	14	60	1.59
50194019--50194074	21	2.6	22	85	2	78	19	12	25	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50197226--50197276	18	3.0	18	78	18	56	47	0	0	52	1.00
50197496--50197545	16	3.1	16	94	0	91	38	34	0	28	1.57
50201608--50201673	24	2.7	25	73	13	66	30	21	10	37	1.87
50211360--50211409	23	2.1	23	82	10	57	70	0	6	24	1.10
50215957--50216009	26	2.0	26	100	0	106	30	15	15	39	1.87
50216322--50216429	21	5.1	21	87	2	130	45	18	23	12	1.84
50216303--50216429	42	3.1	42	81	8	145	45	18	23	12	1.83
50217982--50218017	15	2.5	15	86	4	56	27	19	11	41	1.85
50236681--50236720	16	2.5	16	95	0	71	35	5	32	27	1.79
50236953--50237228	18	16.0	17	64	21	67	53	2	1	42	1.21
50236907--50237225	55	5.4	54	69	22	180	53	2	0	42	1.20
50236933--50240593	120	30.0	120	75	15	2297	52	4	1	41	1.30
50237140--50237172	15	2.1	16	88	5	50	60	3	0	36	1.12
50237157--50237227	17	4.5	16	71	20	60	59	0	1	39	1.06
50237310--50237345	18	2.1	17	90	10	56	66	0	0	33	0.92
50237403--50237467	18	4.2	15	75	18	55	60	1	1	36	1.16
50237634--50237684	12	3.4	16	76	23	65	52	0	0	47	1.00
50237678--50240593	120	24.4	121	82	11	3382	52	4	1	41	1.31
50237856--50237893	18	2.2	17	90	4	58	63	0	2	34	1.09
50237756--50237842	37	2.3	38	74	9	88	51	5	1	41	1.33
50237976--50238169	18	10.9	18	66	18	77	53	3	1	41	1.28
50238036--50238303	37	7.2	38	67	22	147	53	4	0	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50238067--50238132	15	4.4	14	73	19	53	62	0	0	37	0.96
50238079--50238131	16	3.2	16	86	10	63	64	0	0	35	0.94
50238064--50238132	28	2.3	29	80	14	77	60	0	0	39	0.97
50238116--50238454	102	3.2	102	88	9	430	52	4	1	41	1.30
50237756--50238776	461	2.2	462	99	0	2010	52	4	1	41	1.30
50238136--50238296	53	3.1	53	66	20	140	51	5	1	41	1.33
50238290--50238353	17	4.2	16	75	15	64	59	0	1	39	1.07
50238377--50238541	38	4.2	39	66	21	94	53	5	1	40	1.32
50238407--50238446	13	3.2	12	80	13	53	57	0	0	42	0.98
50238437--50238631	18	10.9	18	66	17	77	52	3	1	42	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211