genome.fa.s14.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  124  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35933994--35934034	16	2.5	16	88	11	57	4	4	7	82	0.93
35933991--35934044	26	2.1	26	82	6	65	9	3	9	77	1.09
35934035--35934103	28	2.5	29	93	6	117	49	0	10	40	1.37
35934140--35934181	19	2.3	18	92	8	68	71	7	0	21	1.09
35934140--35934192	20	2.7	20	85	2	54	67	9	0	22	1.19
35934892--35935042	10	15.1	10	66	22	59	1	31	0	67	0.99
35934893--35934936	22	2.0	22	86	0	61	0	29	0	70	0.88
35934920--35935011	5	19.0	5	70	14	50	2	33	0	64	1.06
35934921--35935030	38	2.9	37	87	5	148	1	33	0	64	1.04
35934966--35935039	14	5.1	14	72	22	55	0	31	0	68	0.89
35934960--35935039	34	2.8	28	75	24	85	0	32	0	67	0.91
35935000--35935042	22	1.9	23	85	4	61	0	30	0	69	0.88
35934962--35935043	28	2.7	30	75	19	89	0	32	0	67	0.91
35934941--35935056	42	2.9	40	80	10	105	0	36	0	63	0.94
35935171--35935209	8	4.9	8	87	9	53	5	0	5	89	0.58
35937111--35937187	35	2.2	35	88	2	109	28	14	27	29	1.95
35942031--35942087	20	2.6	21	72	16	53	63	1	22	12	1.38
35942085--35942143	19	3.0	19	87	7	82	67	1	22	8	1.26
35956494--35956727	51	4.6	51	77	5	258	26	17	25	30	1.97
35956494--35956729	101	2.3	102	83	3	280	26	17	25	30	1.97
35964254--35964326	27	2.7	27	79	10	78	24	27	16	31	1.96
35967585--35967670	22	3.9	22	81	6	84	37	17	26	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35984588--35984617	15	1.9	16	93	6	53	36	6	20	36	1.79
35985796--35985886	45	2.0	45	100	0	182	21	24	23	30	1.99
35990510--35990559	21	2.4	21	87	9	68	22	20	26	32	1.98
35990523--35990562	21	1.9	21	100	0	80	22	22	25	30	1.99
35993421--35993474	21	2.7	21	82	5	58	33	27	24	14	1.94
35993435--35993496	21	3.0	21	83	4	72	32	25	30	11	1.91
35998449--35998626	27	6.6	27	84	3	205	29	28	15	26	1.96
35998470--35998625	82	1.9	81	88	3	233	29	28	15	26	1.96
36006415--36006592	27	6.6	27	84	3	205	29	28	15	26	1.96
36006436--36006591	82	1.9	81	88	3	233	29	28	15	26	1.96
36071274--36071460	39	4.9	40	89	8	284	25	23	27	23	2.00
36079280--36079467	40	4.7	40	91	3	290	25	23	26	25	2.00
36081197--36081257	15	3.6	17	78	14	56	21	0	4	73	1.01
36081197--36081261	32	2.0	31	82	8	76	23	0	4	72	1.03
36081214--36081263	17	3.1	17	76	23	54	26	0	8	66	1.19
36084616--36084713	51	1.9	50	81	6	117	28	14	15	41	1.86
36087603--36087643	21	2.0	21	85	4	57	58	2	2	36	1.24
36087832--36087874	11	3.7	11	78	9	50	37	2	2	58	1.24
36088081--36088152	32	2.2	32	82	0	90	30	20	22	26	1.98
36088101--36088161	32	1.9	32	89	0	95	29	19	21	29	1.98
36092319--36092464	40	3.7	40	83	7	172	23	21	27	26	1.99
36092319--36092497	80	2.2	80	80	6	186	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36100227--36100411	79	2.3	81	83	7	227	24	22	27	24	2.00
36100228--36100411	40	4.6	40	82	9	207	25	22	27	24	2.00
36100280--36100444	79	2.1	79	83	6	201	26	21	27	24	1.99
36106724--36106753	7	4.4	7	95	4	53	90	0	10	0	0.47
36112273--36112349	39	2.0	39	89	0	118	50	29	1	18	1.55
36113328--36113391	32	2.0	32	100	0	128	65	0	18	15	1.27
36117373--36117417	23	2.0	23	86	8	65	42	2	15	40	1.59
36119274--36119450	27	6.6	27	79	5	115	28	28	16	26	1.97
36119274--36119450	54	3.3	54	77	15	186	28	28	16	26	1.97
36119295--36119449	81	1.9	81	86	2	222	28	27	16	27	1.97
36120543--36120590	24	2.1	24	92	7	82	39	31	12	16	1.86
36127398--36127575	27	6.6	27	79	3	115	28	28	16	26	1.97
36127398--36127575	54	3.3	55	80	10	204	28	28	16	26	1.97
36127419--36127574	82	1.9	81	85	3	215	28	28	16	26	1.97
36130046--36130919	114	7.7	114	82	2	1078	33	17	22	26	1.96
36130015--36130906	228	3.9	228	91	1	1364	33	16	23	26	1.96
36131184--36131271	13	6.4	14	70	12	56	12	0	39	47	1.41
36131201--36131270	36	2.0	34	86	10	97	10	0	41	48	1.36
36131184--36131271	7	12.7	7	72	11	56	12	0	39	47	1.41
36131802--36131829	12	2.3	12	100	0	56	57	0	0	42	0.99
36135087--36135157	21	3.4	21	80	3	81	32	15	45	7	1.73
36138393--36138474	27	2.8	28	87	10	103	14	25	30	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36138210--36138571	104	3.5	104	88	0	501	19	19	29	32	1.96
36140015--36140135	48	2.5	49	90	4	192	26	20	28	23	1.99
36153930--36153980	10	5.3	10	80	4	52	29	0	1	68	1.00
36153930--36153971	9	4.6	9	84	3	57	30	0	0	69	0.89
36153928--36153980	18	2.9	19	81	13	67	32	0	1	66	1.03
36156987--36157155	85	2.0	85	86	0	239	36	21	9	32	1.86
36157240--36157324	35	2.4	34	79	11	91	62	2	5	29	1.31
36157273--36157303	16	1.9	16	93	0	53	67	3	6	22	1.28
36157254--36157315	19	3.4	19	71	13	58	56	1	6	35	1.35
36157464--36157579	21	5.5	20	65	21	58	32	6	2	57	1.39
36157552--36157609	20	2.8	21	79	12	57	32	3	1	62	1.22
36157509--36157600	47	2.0	46	84	2	121	34	6	1	57	1.32
36157911--36157964	10	5.6	10	73	22	53	61	0	3	35	1.14
36158159--36158231	36	2.0	36	100	0	146	43	10	15	30	1.80
36159425--36159489	17	3.5	17	69	18	58	29	9	13	47	1.74
36159409--36159487	39	2.0	39	100	0	158	27	10	15	46	1.77
36159713--36159809	49	2.0	49	85	2	133	19	14	22	43	1.87
36160823--36160887	17	3.5	17	69	18	58	29	9	13	47	1.74
36160807--36160885	39	2.0	39	100	0	158	27	10	15	46	1.77
36161111--36161207	49	2.0	49	85	2	133	19	14	22	43	1.87
36162746--36162836	47	1.9	48	82	6	114	26	12	26	35	1.91
36165957--36166197	51	4.8	50	79	5	227	25	16	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36165957--36166202	101	2.5	101	81	3	291	26	15	26	31	1.96
36174677--36174742	25	2.6	25	80	4	80	30	16	21	31	1.95
36178777--36178807	2	15.5	2	93	0	53	54	0	0	45	0.99
36179048--36179111	3	21.3	3	100	0	128	32	0	0	67	0.91
36181762--36181805	21	2.0	22	86	8	63	65	4	4	25	1.30
36185230--36185280	18	2.8	18	84	0	66	35	45	7	11	1.70
36185799--36185880	40	2.0	40	100	0	164	30	17	17	35	1.92
36193762--36193819	30	1.9	30	85	3	80	39	8	17	34	1.80
36194110--36194299	51	3.8	50	79	7	213	26	16	25	32	1.96
36194055--36194305	101	2.5	101	84	6	330	27	15	24	32	1.95
36202901--36202964	30	2.2	30	94	2	112	57	14	3	25	1.51
36202993--36203035	22	2.0	22	90	0	68	55	6	13	23	1.62
36204277--36204357	28	2.8	27	78	10	81	56	0	6	37	1.24
36206403--36206445	22	2.0	22	85	0	59	60	9	9	20	1.55
36206411--36206449	11	3.5	11	82	0	51	61	7	10	20	1.52
36211419--36211607	51	3.8	49	79	5	200	31	28	16	24	1.96
36211419--36211603	101	1.8	101	87	3	246	31	27	16	24	1.97
36214802--36214839	10	3.8	10	83	10	51	31	21	23	23	1.98
36215843--36215887	23	2.0	23	86	0	63	13	15	24	46	1.82
36217393--36217709	32	9.9	32	82	0	373	31	10	16	41	1.82
36217393--36217709	96	3.3	96	87	0	420	31	10	16	41	1.82
36217845--36218003	43	3.7	43	83	2	187	28	15	30	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36221673--36221718	23	2.0	23	91	8	76	65	4	4	26	1.30
36223336--36223438	43	2.4	44	78	3	109	26	24	23	26	2.00
36223438--36223744	44	7.0	44	90	0	443	24	25	18	30	1.98
36225001--36225117	62	1.9	60	84	3	153	13	22	11	52	1.73
36234248--36234326	37	2.1	37	86	4	106	25	29	18	26	1.98
36234445--36235032	47	12.5	47	95	0	969	29	29	8	32	1.87
36240425--36240466	11	3.9	11	90	3	59	64	19	2	14	1.39
36240805--36240850	23	2.0	23	91	8	76	65	4	4	26	1.30
36248111--36249542	781	1.8	779	91	1	2352	39	12	11	37	1.78
36250267--36250323	25	2.3	25	87	0	78	28	17	8	45	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211