genome.fa.s14.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  209  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61814476--61814506	12	2.5	12	94	5	53	0	29	3	67	1.06
61814480--61814544	30	2.2	30	83	5	78	0	29	6	64	1.17
61815906--61815975	37	1.9	36	82	2	86	40	1	8	50	1.42
61816774--61816814	15	2.8	15	85	3	57	21	29	39	9	1.86
61823293--61823367	31	2.4	30	84	8	89	28	21	2	48	1.64
61824298--61824337	21	1.9	21	89	0	62	55	5	5	35	1.44
61832799--61833165	189	1.9	189	89	1	563	26	23	17	31	1.97
61838143--61838259	59	2.0	59	94	0	207	32	13	17	36	1.89
61838562--61838604	3	14.3	3	100	0	86	67	0	32	0	0.91
61842248--61842290	18	2.6	16	81	7	50	72	20	0	6	1.08
61843773--61844004	122	1.9	122	92	1	394	40	18	11	29	1.86
61845737--61845789	27	2.0	27	88	3	81	41	3	9	45	1.54
61848492--61848519	6	4.7	6	100	0	56	17	0	35	46	1.49
61858582--61858627	16	2.7	16	80	12	56	28	2	2	67	1.14
61859276--61859355	28	2.7	31	75	16	89	41	18	2	37	1.64
61859276--61859386	30	3.8	30	74	11	86	40	17	7	35	1.77
61863634--61863964	168	2.0	168	90	0	527	25	27	21	25	1.99
61864051--61864083	16	2.1	16	100	0	66	21	18	12	48	1.80
61872563--61872622	27	2.3	26	83	11	77	26	5	0	68	1.10
61872616--61872656	21	2.0	21	95	0	73	31	2	0	65	1.05
61872616--61872663	21	2.2	22	88	3	71	29	2	4	64	1.23
61873500--61873535	11	3.2	11	84	7	54	75	2	0	22	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61873500--61873545	22	2.0	22	91	4	74	71	4	2	21	1.14
61874414--61874463	20	2.5	20	77	3	66	56	0	2	42	1.11
61877178--61877349	91	1.9	94	89	6	271	20	12	15	51	1.76
61877251--61877450	112	1.8	110	87	4	303	22	10	15	53	1.71
61877468--61877763	107	2.7	105	82	8	362	25	10	12	52	1.70
61877468--61877774	110	2.9	105	82	6	366	25	10	12	52	1.69
61880807--61881006	106	1.9	106	87	6	302	24	10	13	52	1.71
61881081--61881390	111	2.8	110	88	1	437	24	12	13	49	1.77
61889978--61890019	21	1.9	23	90	9	70	28	2	4	64	1.26
61889977--61890025	23	2.2	20	83	16	62	28	2	4	65	1.22
61890361--61890453	44	2.1	43	84	5	116	48	5	6	39	1.52
61902305--61902347	14	3.4	14	75	24	58	41	0	0	58	0.98
61922108--61922157	17	2.7	20	78	18	70	10	0	44	46	1.37
61926753--61926802	17	2.7	20	78	18	70	10	0	44	46	1.37
61936212--61936319	37	2.8	37	87	9	114	19	13	15	50	1.77
61936234--61936319	37	2.3	37	97	0	163	17	15	16	51	1.77
61943382--61943422	21	2.0	21	90	0	64	29	21	29	19	1.98
61946576--61946610	5	6.8	5	87	6	52	37	0	2	60	1.12
61946576--61946620	16	2.9	16	86	3	56	35	2	2	60	1.22
61951754--61951802	22	2.2	22	85	3	62	2	20	8	69	1.24
61952965--61952991	14	1.9	14	100	0	54	51	0	11	37	1.37
61954981--61955010	6	4.8	6	95	4	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61955141--61955228	43	2.0	43	100	0	176	39	12	22	25	1.89
61955818--61955858	18	2.3	18	86	0	55	41	0	7	51	1.30
61962464--61962522	32	2.0	30	83	12	77	28	6	5	59	1.45
61963425--61963493	14	4.8	14	72	13	59	73	0	1	24	0.91
61963455--61963494	7	5.7	7	90	0	62	77	0	0	22	0.77
61963454--61963495	13	3.2	13	86	6	57	76	0	0	23	0.79
61965248--61965312	31	2.1	31	85	5	87	24	9	18	47	1.77
61982437--61982473	20	1.9	19	89	10	58	21	0	5	72	1.04
61984392--61984443	4	13.0	4	95	0	95	48	25	0	26	1.52
61987505--61987529	12	2.1	12	100	0	50	8	56	20	16	1.65
61989691--61989732	22	1.9	22	85	0	57	40	0	0	59	0.97
62002044--62002081	19	2.0	19	94	0	67	26	28	5	39	1.78
62002048--62002089	19	2.2	19	86	0	57	30	23	4	40	1.75
62002237--62002276	4	10.0	4	88	0	53	27	5	25	42	1.75
62009122--62009161	14	2.8	16	78	21	52	55	5	0	40	1.22
62012143--62012195	27	2.0	27	88	0	79	39	20	5	33	1.76
62017788--62017861	31	2.4	29	75	20	71	43	14	4	37	1.65
62019301--62019326	6	4.3	6	100	0	52	34	0	15	50	1.45
62024351--62024375	11	2.3	11	100	0	50	28	40	8	24	1.83
62027796--62027828	3	11.0	3	93	0	57	33	30	0	36	1.58
62031743--62031803	20	3.0	20	85	4	77	44	6	4	44	1.51
62033943--62033984	16	2.6	16	92	0	66	42	7	2	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62033958--62034019	23	2.8	23	80	4	65	46	1	1	50	1.20
62034739--62034771	16	1.9	17	88	11	50	72	6	9	12	1.26
62035644--62035694	26	2.0	24	81	7	57	45	0	1	52	1.12
62039973--62040033	20	3.0	20	85	4	77	44	6	4	44	1.51
62040122--62040152	3	10.3	3	92	0	53	67	3	0	29	1.06
62040985--62041025	15	2.7	15	96	0	73	9	17	26	46	1.79
62041099--62041154	3	18.7	3	100	0	112	33	0	0	66	0.92
62044333--62044372	20	2.0	20	90	0	62	27	10	12	50	1.72
62044318--62044384	34	1.9	35	90	3	109	31	8	13	46	1.74
62044312--62044388	14	5.0	15	71	20	52	33	9	14	42	1.77
62046045--62046103	28	2.1	27	84	3	73	18	8	3	69	1.28
62046208--62046266	18	3.1	18	82	7	73	35	1	0	62	1.05
62046215--62046273	9	6.2	9	77	15	57	35	0	0	64	0.94
62046215--62046272	27	2.1	29	83	6	75	36	0	0	63	0.94
62050014--62050055	22	2.0	21	85	4	57	47	0	7	45	1.30
62055106--62055136	16	1.9	16	93	0	53	54	9	6	29	1.57
62058423--62058460	4	9.5	4	94	0	58	50	18	0	31	1.47
62058422--62058460	20	2.0	20	94	0	69	48	17	0	33	1.48
62059548--62059587	20	2.0	20	90	0	62	27	10	12	50	1.72
62059533--62059599	34	1.9	35	90	3	109	31	8	13	46	1.74
62059527--62059603	14	5.0	15	71	20	52	33	9	14	42	1.77
62076307--62076352	3	15.3	3	100	0	92	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62084408--62084438	16	1.9	16	93	0	53	3	6	3	87	0.75
62087752--62087797	20	2.2	20	82	17	51	28	4	0	67	1.10
62087752--62087793	21	1.9	23	85	9	61	28	4	0	66	1.12
62090670--62090719	17	2.7	20	78	18	70	10	0	44	46	1.37
62095298--62095347	17	2.7	20	78	18	70	10	0	44	46	1.37
62102937--62102961	6	4.2	6	100	0	50	84	0	0	16	0.63
62103155--62103325	59	2.9	59	79	8	186	25	16	12	46	1.81
62103761--62103827	31	2.2	31	86	0	89	44	11	17	25	1.83
62103771--62103839	31	2.2	31	84	0	84	43	13	18	24	1.86
62107863--62107912	20	2.5	19	81	15	57	30	0	4	66	1.10
62108078--62108119	22	1.9	22	85	9	59	28	0	2	69	1.01
62113429--62113457	5	6.0	5	92	8	51	0	17	0	82	0.66
62113753--62113833	36	2.3	35	93	4	135	28	23	20	27	1.99
62115069--62115267	50	3.8	50	87	4	254	21	30	23	25	1.99
62115076--62115267	106	1.9	101	86	7	278	20	30	23	25	1.99
62115362--62115393	13	2.5	13	94	0	55	56	12	0	31	1.37
62115605--62115662	30	1.9	30	89	0	89	31	24	3	41	1.71
62122619--62122816	50	3.8	50	87	4	261	21	30	23	25	1.99
62122626--62122816	106	1.9	100	89	6	292	20	30	23	25	1.99
62122911--62122942	13	2.5	13	94	0	55	56	12	0	31	1.37
62123154--62123210	30	1.9	29	85	3	78	31	24	1	42	1.65
62125181--62125324	33	4.3	33	69	13	105	29	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62125164--62125392	101	2.3	101	93	0	386	30	24	15	29	1.96
62125200--62125392	33	5.7	33	69	7	93	29	26	15	29	1.96
62145176--62145233	19	3.1	19	85	5	73	56	3	0	39	1.16
62145176--62145228	20	2.7	20	88	5	72	58	3	0	37	1.16
62145235--62145273	19	2.0	19	85	5	51	51	5	0	43	1.24
62145191--62145282	45	2.0	45	82	8	112	51	3	1	44	1.25
62145641--62145766	39	3.3	37	67	22	91	47	3	5	42	1.45
62146074--62146182	4	27.0	4	74	20	70	69	0	30	0	0.88
62146074--62146216	14	9.9	14	72	19	91	69	0	30	0	0.88
62146088--62146249	38	4.4	38	72	18	139	67	0	32	0	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211