genome.fa.s14.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  206  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60738525--60738619	45	2.1	45	88	1	138	32	27	5	34	1.79
60738598--60738635	16	2.4	16	90	0	58	34	34	0	31	1.58
60740493--60741066	286	2.0	284	94	1	997	36	11	17	34	1.86
60741512--60742026	249	2.1	249	93	1	888	37	10	17	34	1.85
60741846--60742623	328	2.3	332	94	2	1359	35	10	20	33	1.87
60742624--60743264	280	2.3	278	91	4	1030	36	11	17	33	1.87
60742978--60743689	335	2.1	335	92	1	1158	35	11	20	32	1.88
60744320--60744383	9	7.2	9	76	15	55	56	1	3	39	1.25
60744984--60745072	47	1.9	46	88	6	135	39	16	13	30	1.87
60745245--60745292	12	4.0	12	76	10	53	41	18	14	25	1.88
60745244--60745290	24	2.0	24	87	8	69	44	19	14	21	1.86
60745344--60745369	12	2.2	12	100	0	52	7	15	30	46	1.74
60745358--60745449	40	2.3	38	83	9	112	36	20	19	22	1.95
60745375--60745469	39	2.4	40	86	6	124	42	21	16	20	1.90
60745506--60745622	41	2.9	41	87	5	164	23	21	28	26	1.99
60746030--60746108	23	3.5	23	74	8	74	27	1	37	32	1.65
60746013--60746082	22	3.2	21	80	9	70	24	1	40	34	1.64
60746016--60746083	14	4.7	14	72	16	50	26	1	38	33	1.66
60746294--60746331	14	2.7	15	88	12	62	28	0	28	42	1.56
60745899--60746810	298	3.0	298	85	6	1075	29	2	27	40	1.70
60746581--60746625	14	3.1	14	84	6	63	28	0	37	33	1.58
60747084--60747605	156	3.4	154	87	6	731	44	10	13	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60748786--60749079	43	6.8	43	85	3	315	24	20	29	24	1.99
60748786--60749079	86	3.4	86	85	3	360	24	20	29	24	1.99
60748786--60749079	129	2.3	129	83	1	356	24	20	29	24	1.99
60749444--60749497	20	2.7	19	76	18	56	42	1	1	53	1.22
60755023--60755054	15	2.1	15	100	0	64	53	15	25	6	1.65
60756180--60756575	194	2.0	194	100	0	792	42	9	9	38	1.69
60758425--60758467	18	2.4	18	80	7	52	41	2	2	53	1.26
60764450--60764527	6	11.4	7	84	15	62	65	2	1	30	1.14
60764461--60764527	3	22.3	3	85	11	93	65	2	0	31	1.07
60772971--60773067	35	2.8	33	80	6	95	43	20	11	24	1.85
60782444--60782491	25	2.0	24	91	4	78	16	25	20	37	1.93
60782420--60782497	24	3.2	24	75	8	77	19	24	21	34	1.96
60783493--60783532	10	3.9	10	83	3	53	40	0	12	47	1.41
60783493--60783532	20	2.0	20	90	0	62	40	0	12	47	1.41
60787979--60788023	23	2.0	23	81	0	54	22	0	15	62	1.33
60788107--60788155	20	2.5	20	80	9	57	38	2	2	57	1.22
60789289--60789318	15	1.9	16	93	6	53	53	13	0	33	1.40
60789808--60789861	21	2.6	20	74	14	56	51	7	3	37	1.48
60790684--60790729	23	2.0	24	83	12	60	67	6	19	6	1.36
60794786--60794827	3	14.0	3	84	0	57	64	4	2	28	1.26
60799015--60799149	59	2.3	59	80	1	171	37	9	17	35	1.82
60804515--60804558	18	2.6	17	82	10	54	22	9	25	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60804615--60804644	16	1.9	15	93	6	51	40	13	10	36	1.78
60809447--60809477	12	2.6	12	94	0	53	35	35	3	25	1.72
60813508--60813560	26	2.0	26	100	0	106	30	0	15	54	1.41
60813723--60813749	6	4.5	6	100	0	54	33	0	14	51	1.43
60817194--60817258	29	2.4	26	76	14	76	53	1	1	43	1.19
60820574--60820962	171	2.3	171	88	3	552	40	13	12	33	1.82
60822726--60822768	21	2.0	22	86	13	63	58	2	0	39	1.11
60823128--60823158	15	2.1	14	94	5	53	61	0	3	35	1.12
60824983--60825026	22	2.0	22	100	0	88	36	36	4	22	1.75
60826948--60827115	87	1.9	87	93	0	291	33	14	21	30	1.94
60827311--60827344	16	2.1	16	88	0	50	41	2	20	35	1.68
60829918--60829961	18	2.5	17	80	16	54	11	9	2	77	1.08
60830750--60830806	7	7.4	7	79	14	51	15	0	5	78	0.91
60830749--60830806	16	4.4	13	72	25	50	17	0	5	77	0.94
60834883--60834932	18	2.7	18	87	9	66	82	4	12	2	0.90
60834897--60834940	19	2.2	20	88	4	72	81	2	15	0	0.78
60834897--60834940	7	6.6	7	79	10	56	81	2	15	0	0.78
60836086--60836317	44	5.3	42	63	13	101	24	23	25	26	2.00
60835894--60836603	88	8.1	88	83	3	749	29	22	23	24	1.99
60836219--60836356	44	3.1	43	68	19	113	26	25	23	23	2.00
60836681--60836876	95	2.1	95	85	1	259	30	18	22	28	1.97
60836858--60838274	40	33.4	43	71	13	601	33	21	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60836879--60838269	84	16.4	84	79	9	568	33	21	20	23	1.97
60837076--60837271	95	2.1	95	86	3	270	29	19	23	27	1.98
60836681--60837478	395	2.0	395	96	0	1452	31	20	21	26	1.98
60837274--60838269	168	6.0	166	87	5	1130	34	22	20	22	1.97
60837400--60838292	291	3.0	291	87	4	1253	34	22	20	22	1.97
60837275--60838292	459	2.2	459	90	3	1577	34	22	20	22	1.97
60838977--60839016	18	2.2	18	86	8	55	12	7	2	77	1.07
60839809--60839868	8	7.5	8	76	14	52	15	0	5	80	0.88
60850468--60850505	5	7.6	5	93	0	58	78	0	5	15	0.91
60854460--60854487	3	9.3	3	100	0	56	32	0	32	35	1.58
60860062--60860166	3	35.0	3	94	0	183	0	34	0	65	0.93
60860949--60860985	19	1.9	19	88	0	56	32	0	0	67	0.91
60863476--60863505	11	2.8	11	95	5	53	33	0	0	66	0.92
60873838--60873870	13	2.5	13	95	0	57	45	9	9	36	1.68
60891789--60891836	24	2.0	24	87	0	69	33	4	39	22	1.74
60892269--60892313	15	3.0	15	76	0	54	33	4	35	26	1.77
60900708--60900761	23	2.3	23	83	0	72	33	7	1	57	1.37
60900553--60900791	3	80.7	3	66	16	61	25	7	4	62	1.40
60900870--60900909	3	13.3	3	83	0	53	32	5	2	60	1.32
60902319--60902354	16	2.2	17	90	5	56	52	0	0	47	1.00
60903015--60903061	15	3.1	15	81	0	67	27	17	2	53	1.55
60903990--60904034	22	2.0	22	83	8	56	35	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60924281--60924549	101	2.7	101	87	1	378	29	32	14	23	1.94
60925138--60925176	17	2.2	18	86	4	53	28	0	2	69	1.02
60932181--60932288	37	3.1	32	66	16	81	30	0	7	62	1.23
60946531--60946573	22	1.9	23	85	4	61	34	6	0	58	1.25
60946916--60947033	58	2.0	58	100	0	236	38	10	26	25	1.87
60952000--60952057	9	6.4	9	83	0	71	37	24	12	25	1.90
60952000--60952057	18	3.2	18	85	0	80	37	24	12	25	1.90
60952097--60952125	6	4.8	6	100	0	58	17	0	17	65	1.27
60952081--60952138	18	3.0	20	82	12	66	22	3	12	62	1.45
60964407--60964724	162	2.0	163	91	3	516	29	25	13	31	1.94
60965588--60965659	32	2.2	32	87	0	108	34	20	12	31	1.90
60968607--60968697	47	1.9	47	84	8	123	62	2	3	31	1.23
60968682--60968714	11	2.8	12	86	9	50	63	0	0	36	0.95
60974835--60974874	17	2.4	16	84	12	53	40	2	0	57	1.12
60975623--60975675	20	2.6	19	80	11	52	32	3	22	41	1.72
60975896--60975931	12	3.0	13	80	19	51	47	0	0	52	1.00
60978801--60978870	3	23.3	3	85	5	97	31	1	34	32	1.67
61004938--61004967	15	2.0	15	100	0	60	13	13	53	20	1.72
61006975--61007032	28	2.1	28	83	6	73	46	0	3	50	1.18
61013549--61013620	8	9.0	8	78	13	60	84	6	2	5	0.85
61013550--61013617	9	7.8	9	74	12	52	85	7	2	4	0.82
61013549--61013631	32	2.6	31	83	9	96	84	6	4	4	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61014067--61014100	13	2.8	12	90	4	50	79	2	17	0	0.86
61015054--61015639	100	5.9	100	83	3	693	30	22	21	25	1.98
61015060--61015631	50	11.5	50	67	4	242	31	21	21	25	1.98
61015042--61015639	199	3.0	199	86	4	771	30	22	21	25	1.98
61015054--61015639	299	2.0	298	88	1	879	30	22	21	25	1.98
61015636--61015827	40	4.6	40	73	11	170	29	24	22	23	1.99
61015674--61015852	43	4.2	42	71	12	150	30	26	21	21	1.98
61015627--61015895	127	2.1	127	92	2	459	30	26	20	23	1.98
61017694--61017938	127	1.9	128	85	7	336	38	17	9	34	1.82
61019696--61019767	20	3.7	20	85	7	94	36	0	5	58	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211