genome.fa.s14.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  167  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49242452--49242485	11	3.0	12	87	12	54	32	0	0	67	0.91
49242486--49242525	18	2.2	18	86	8	55	67	12	0	20	1.22
49242608--49242670	30	2.1	30	91	5	101	57	11	3	28	1.49
49243451--49243493	14	3.1	14	93	0	68	39	0	0	60	0.97
49243964--49244009	22	2.1	21	88	11	67	39	2	2	56	1.24
49253638--49253692	29	2.0	26	82	10	65	50	14	7	27	1.69
49253903--49253944	19	2.1	21	86	8	61	59	2	0	38	1.10
49255816--49255907	37	2.5	37	81	8	107	31	22	1	44	1.60
49255816--49255908	36	2.5	35	80	13	98	31	23	1	44	1.61
49256694--49256743	21	2.5	21	81	15	61	52	2	2	44	1.24
49267069--49267382	153	2.1	153	98	0	610	26	15	16	42	1.87
49271887--49272119	76	3.1	76	83	2	263	19	20	26	34	1.96
49271887--49272119	38	6.1	38	78	0	223	19	20	26	34	1.96
49278413--49278695	38	7.4	38	78	7	261	18	20	29	32	1.96
49278413--49278680	114	2.4	114	84	2	333	18	20	29	31	1.96
49279293--49279451	81	2.0	80	96	1	291	18	25	23	32	1.97
49283609--49283648	20	2.1	19	85	4	53	60	5	17	17	1.54
49284753--49284842	41	2.2	41	86	7	121	23	23	2	51	1.60
49289789--49289851	25	2.5	25	82	5	74	25	26	22	25	2.00
49291694--49291790	46	2.1	46	96	0	176	36	10	21	31	1.87
49296219--49296278	27	2.3	27	88	2	86	33	11	11	43	1.77
49298225--49298277	23	2.3	23	80	3	63	50	1	3	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49310677--49310726	4	12.5	4	95	0	91	52	24	0	24	1.48
49316102--49316143	6	7.0	6	100	0	84	16	16	0	66	1.25
49327573--49327617	22	2.0	22	83	8	56	53	6	6	33	1.53
49328975--49329002	9	3.1	9	100	0	56	10	0	0	89	0.49
49341393--49341578	44	4.2	44	68	8	108	33	19	21	25	1.97
49341385--49341665	132	2.1	132	89	0	429	32	20	22	24	1.98
49345611--49345694	25	3.4	25	86	0	105	46	14	19	20	1.84
49346025--49346059	18	2.1	18	89	10	56	22	11	0	65	1.24
49346944--49346979	15	2.4	15	100	0	72	58	13	0	27	1.36
49360794--49360978	45	4.2	45	82	5	198	22	15	27	34	1.94
49366015--49366087	35	2.1	35	97	0	137	31	21	8	38	1.83
49374163--49374245	40	2.1	40	83	0	103	39	18	27	14	1.89
49374176--49374274	40	2.5	38	79	14	101	35	19	26	19	1.95
49376514--49376548	17	2.1	17	88	0	52	28	28	25	17	1.97
49381238--49381341	41	2.5	41	87	3	147	35	15	27	21	1.93
49388685--49388981	46	6.5	46	96	1	528	28	22	15	33	1.95
49388580--49388794	108	2.0	107	92	0	358	27	24	13	33	1.94
49395962--49396019	28	2.0	29	83	9	75	27	0	10	62	1.28
49396891--49396939	9	5.4	9	90	0	80	44	22	8	24	1.79
49398042--49398099	28	2.0	29	83	9	75	27	0	10	62	1.28
49399024--49399070	6	7.8	6	100	0	94	17	0	17	65	1.27
49399024--49399083	18	3.2	20	92	4	83	20	0	13	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49399718--49399779	20	3.3	19	76	12	65	24	3	8	64	1.36
49405386--49405435	19	2.7	19	90	3	75	6	24	20	50	1.70
49405410--49405532	25	5.2	25	78	11	150	2	23	24	49	1.62
49405435--49405542	44	2.5	44	89	0	162	1	24	22	51	1.57
49405393--49405532	69	2.0	69	90	0	217	2	23	23	50	1.63
49405393--49405542	19	7.9	19	69	21	93	2	24	22	50	1.62
49410262--49410290	12	2.3	13	94	5	51	24	0	0	75	0.80
49414347--49414412	18	3.7	18	97	0	123	34	13	12	39	1.82
49414838--49415010	72	2.4	72	80	5	215	26	6	13	53	1.64
49420210--49420259	25	2.0	24	88	3	73	56	2	2	40	1.22
49420223--49420269	21	2.4	21	82	10	55	57	4	0	38	1.18
49435412--49435465	18	3.0	19	78	10	51	62	7	9	20	1.48
49435836--49435880	19	2.4	18	82	10	54	44	2	2	51	1.26
49436469--49436520	21	2.5	21	83	0	68	9	1	11	76	1.09
49444415--49444451	18	2.1	18	100	0	74	16	29	0	54	1.43
49447135--49447161	11	2.5	11	100	0	54	22	0	0	77	0.76
49447365--49447417	19	2.7	21	80	16	60	39	1	3	54	1.29
49459873--49459910	17	2.3	17	86	13	53	73	0	0	26	0.83
49463749--49464627	433	2.0	434	96	0	1609	26	14	10	48	1.76
49470805--49471017	46	4.7	46	93	2	376	30	21	14	34	1.92
49470805--49471017	90	2.3	91	95	1	374	30	21	14	34	1.92
49482339--49482680	44	7.8	44	89	1	427	30	20	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49485019--49485050	12	2.6	13	85	14	50	37	0	6	56	1.25
49488032--49488080	20	2.5	20	89	0	71	20	28	0	51	1.48
49488758--49488921	40	4.1	40	92	0	265	42	29	17	10	1.83
49489102--49489163	23	2.7	23	85	2	81	50	1	1	46	1.20
49489139--49489178	16	2.5	16	91	0	62	47	2	7	42	1.45
49489189--49489367	68	2.9	59	83	13	250	40	5	9	44	1.59
49489251--49489278	9	3.1	9	100	0	56	32	0	10	57	1.33
49489167--49489337	68	2.5	68	96	1	310	40	4	8	46	1.54
49489434--49489479	24	1.9	24	91	8	76	65	0	0	34	0.93
49490284--49490345	25	2.5	25	81	0	70	33	30	19	16	1.94
49493309--49493347	11	3.5	11	93	6	62	28	0	0	71	0.86
49495401--49495480	42	1.9	42	82	5	99	18	25	17	38	1.92
49495399--49495496	42	2.3	41	77	3	97	18	24	18	38	1.93
49501110--49501153	20	2.2	20	83	0	52	56	11	18	13	1.66
49513737--49513761	13	1.9	13	100	0	50	48	20	8	24	1.76
49516614--49516687	21	3.5	21	100	0	148	28	24	22	24	2.00
49517033--49517156	41	3.0	41	81	0	158	21	20	27	30	1.98
49520576--49520696	43	2.8	43	84	2	154	28	9	29	31	1.89
49520573--49520764	85	2.2	86	78	2	199	30	14	26	29	1.95
49520662--49520765	43	2.5	42	87	1	136	32	18	21	27	1.96
49520662--49520794	43	3.1	42	80	4	133	33	19	21	25	1.97
49521169--49521199	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49521655--49521694	20	2.0	20	85	9	55	22	30	0	47	1.52
49521802--49521840	9	4.4	9	96	3	71	33	0	0	66	0.92
49521802--49521862	18	3.5	17	81	16	72	34	1	3	60	1.23
49524122--49524168	22	2.0	23	88	8	69	38	0	6	55	1.26
49525671--49525703	18	1.9	17	88	11	50	15	12	6	66	1.42
49530523--49530565	18	2.4	18	92	0	68	25	25	6	41	1.80
49531715--49531756	20	2.1	20	95	0	75	35	19	11	33	1.88
49534104--49534627	124	4.2	125	87	3	660	28	15	16	38	1.90
49534104--49534627	249	2.1	253	84	4	666	28	15	16	38	1.90
49534692--49534822	34	3.9	34	83	9	153	45	12	0	40	1.48
49534720--49534832	29	3.6	29	70	21	84	43	12	0	43	1.48
49535399--49535434	18	2.0	18	88	0	54	33	0	0	66	0.92
49535874--49535923	26	1.9	26	100	0	100	20	26	26	28	1.99
49536498--49536532	19	1.9	19	88	11	56	17	11	5	65	1.43
49540364--49540447	19	4.1	21	82	8	68	42	14	5	36	1.70
49540364--49540421	22	2.6	22	81	7	64	41	17	5	36	1.72
49540377--49540472	19	4.8	19	84	5	102	39	13	7	39	1.72
49540998--49541099	44	2.3	44	88	3	143	32	23	13	30	1.93
49541065--49541432	132	2.8	132	92	1	614	29	23	20	27	1.99
49541109--49541504	132	3.0	131	86	3	395	28	23	19	28	1.98
49547598--49547640	19	2.3	18	84	15	52	62	0	0	37	0.95
49548270--49548334	22	3.1	21	77	12	62	43	15	6	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49548270--49548327	22	2.6	22	81	7	64	41	17	5	36	1.72
49548306--49548430	19	6.8	19	81	9	161	39	12	8	40	1.73
49548299--49548430	57	2.5	55	86	8	184	38	12	8	40	1.74
49548322--49548354	14	2.4	14	100	0	66	42	9	6	42	1.61
49549504--49549546	21	2.1	20	82	4	50	48	0	2	48	1.14
49556037--49556082	24	1.9	24	82	8	58	32	17	8	41	1.80
49558558--49558626	35	2.0	35	88	0	102	27	23	23	26	2.00
49566409--49566542	68	2.0	68	88	2	198	20	32	22	23	1.98
49566776--49566824	21	2.4	20	83	10	55	65	10	0	24	1.23
49567149--49567180	7	4.6	7	96	0	55	87	9	0	3	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211