genome.fa.s14.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  173  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51268587--51268668	25	2.9	29	74	18	93	53	2	1	42	1.21
51268617--51268669	24	2.2	25	86	10	74	54	1	1	41	1.22
51268631--51268762	25	5.1	25	64	15	63	49	0	0	50	1.06
51268280--51268747	149	3.2	147	94	2	789	49	1	1	47	1.18
51268672--51268721	21	2.3	22	93	3	84	38	0	0	62	0.96
51268642--51268791	80	1.9	81	85	4	214	46	0	1	52	1.14
51268998--51269029	16	1.9	17	93	6	57	21	21	6	50	1.71
51271876--51271977	3	34.0	3	97	0	195	0	33	0	65	0.99
51273455--51273679	33	6.8	33	69	6	116	26	25	17	30	1.97
51273455--51273715	101	2.6	100	86	2	362	26	25	16	31	1.96
51276700--51276754	26	2.2	25	80	9	58	34	0	5	60	1.20
51277937--51277989	23	2.3	22	84	12	63	62	3	5	28	1.35
51277946--51277998	25	2.2	24	87	12	74	66	5	5	22	1.35
51278522--51278569	24	2.0	24	100	0	96	29	37	4	29	1.76
51282074--51282105	14	2.3	14	94	0	55	31	25	0	43	1.55
51282122--51282169	23	2.0	24	84	12	62	33	16	4	45	1.67
51290221--51290399	83	2.1	82	83	10	213	35	16	16	31	1.91
51293366--51293397	6	5.3	6	100	0	64	0	18	0	81	0.70
51293697--51293772	28	2.6	30	72	16	79	59	2	1	36	1.20
51293836--51293875	16	2.4	17	87	8	55	70	2	0	27	1.01
51294937--51294967	16	1.9	16	93	0	53	74	6	6	12	1.21
51301059--51301304	27	9.2	27	87	2	284	45	20	15	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51301059--51301304	53	4.6	54	87	4	288	45	20	15	18	1.85
51301629--51301717	30	3.0	30	89	0	142	19	23	23	33	1.97
51302330--51302427	25	3.9	25	75	12	85	31	23	21	23	1.98
51308990--51309024	17	2.1	17	88	0	52	40	20	5	34	1.76
51309731--51309755	8	3.1	8	100	0	50	64	0	0	36	0.94
51311508--51311833	46	7.6	45	86	8	377	29	21	13	35	1.92
51311689--51311797	36	3.0	36	93	0	182	29	21	11	37	1.89
51322951--51323001	27	1.9	26	84	11	68	68	1	1	27	1.11
51323129--51323163	17	2.1	17	88	0	52	34	5	2	57	1.37
51323252--51323364	49	2.3	49	79	11	124	31	3	4	60	1.34
51325421--51325460	18	2.2	19	86	4	55	15	7	2	75	1.14
51330095--51330129	7	5.0	7	86	13	54	85	14	0	0	0.59
51330096--51330127	13	2.4	13	94	5	55	87	12	0	0	0.54
51330556--51330591	13	3.0	12	92	8	56	77	0	13	8	0.98
51330949--51331025	38	2.0	38	95	5	138	25	19	10	44	1.83
51331932--51332096	50	3.3	50	66	3	116	33	21	21	23	1.97
51331871--51332214	100	3.4	99	83	2	411	31	19	21	27	1.97
51332258--51332903	45	14.4	45	83	5	815	30	16	22	30	1.96
51332992--51333098	50	2.1	50	86	5	153	36	23	13	27	1.92
51333121--51333737	44	14.4	42	70	12	272	32	22	19	25	1.98
51333155--51333737	85	6.8	86	70	12	270	31	23	19	25	1.97
51333104--51333737	129	4.9	129	90	1	952	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51334414--51334461	17	2.7	18	87	6	71	14	8	2	75	1.13
51336751--51336787	17	2.1	18	90	5	58	43	5	5	45	1.49
51347332--51347954	229	2.7	229	84	3	770	29	17	20	32	1.96
51348341--51348389	22	2.3	22	89	3	73	28	2	28	40	1.68
51348400--51348438	21	1.9	20	89	5	60	17	2	41	38	1.64
51354424--51354513	21	4.3	21	67	20	71	48	12	1	37	1.48
51354484--51355021	9	62.0	9	67	19	220	44	20	2	32	1.63
51354496--51354524	12	2.4	12	100	0	58	48	10	0	41	1.37
51354527--51354553	12	2.2	12	100	0	54	51	14	0	33	1.43
51354539--51354991	16	27.8	16	66	21	128	45	20	1	32	1.61
51354561--51354632	37	1.9	37	85	0	99	44	20	2	31	1.66
51354539--51354973	25	17.0	25	70	16	177	45	20	1	32	1.61
51354561--51354868	67	4.6	67	89	3	410	45	19	0	34	1.57
51354961--51355021	25	2.4	25	91	0	95	40	22	6	29	1.79
51356382--51356762	43	8.9	43	87	1	507	25	18	30	25	1.98
51360499--51360571	27	2.7	27	84	0	92	41	26	17	15	1.89
51365003--51365032	15	1.9	16	93	6	53	26	0	6	66	1.16
51366700--51366739	19	2.1	19	100	0	80	40	10	10	40	1.72
51367137--51367218	21	3.9	21	72	12	69	17	20	17	45	1.86
51368509--51368585	31	2.5	31	95	4	138	28	6	28	36	1.82
51372505--51372540	7	5.1	7	90	9	56	13	0	0	86	0.58
51372505--51372537	15	2.3	15	94	5	59	12	0	0	87	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51372505--51372568	28	2.2	28	80	2	65	14	7	0	78	0.96
51372599--51372647	24	2.0	24	81	14	57	18	10	4	67	1.36
51372750--51372786	11	3.3	11	85	7	56	18	8	8	64	1.45
51376722--51376759	19	2.1	19	90	5	60	13	10	13	63	1.53
51401660--51401699	18	2.2	18	90	0	62	0	20	5	75	0.99
51411403--51411431	13	2.3	13	94	5	51	37	0	3	58	1.15
51412570--51412607	15	2.5	15	95	4	67	42	5	26	26	1.76
51416620--51416664	22	2.0	22	86	0	63	26	15	26	31	1.96
51418461--51418493	15	2.2	15	94	0	57	36	12	0	51	1.39
51421510--51421682	45	3.9	45	89	2	260	24	21	17	35	1.95
51427869--51427911	20	2.2	20	91	0	68	25	4	9	60	1.47
51434452--51434492	21	2.0	20	85	4	55	73	2	0	24	0.96
51439859--51439901	18	2.4	18	92	0	68	41	9	27	20	1.83
51440488--51440512	7	3.6	7	100	0	50	60	12	0	28	1.32
51442610--51442658	10	5.1	10	79	18	59	34	0	0	65	0.93
51442618--51442658	9	4.6	9	84	9	57	36	0	0	63	0.95
51442615--51442663	17	2.8	17	81	3	62	34	0	2	63	1.06
51443106--51443149	21	2.0	21	86	4	61	47	2	11	38	1.52
51443115--51443159	21	2.1	21	91	0	72	42	6	11	40	1.67
51454247--51454285	7	5.6	7	100	0	78	25	0	74	0	0.82
51456424--51456477	23	2.2	24	80	12	65	35	1	5	57	1.33
51468966--51469016	20	2.5	20	87	6	68	19	19	31	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51470223--51470265	21	2.2	19	83	8	50	72	4	9	13	1.26
51471785--51471831	24	2.0	24	83	8	60	27	2	21	48	1.61
51472343--51472401	29	2.0	29	90	0	91	25	23	15	35	1.94
51492667--51492788	63	1.9	63	94	0	217	29	27	19	23	1.98
51495809--51495840	16	2.0	16	93	0	55	25	15	0	59	1.36
51496062--51496205	51	2.8	52	77	8	159	31	27	17	22	1.96
51496463--51496493	16	1.9	16	93	0	53	45	9	9	35	1.70
51500041--51500070	15	1.9	16	93	6	53	33	0	23	43	1.54
51500796--51500836	16	2.6	16	92	0	64	46	4	4	43	1.46
51502314--51502377	25	2.6	26	82	9	89	53	20	7	18	1.69
51504176--51504207	9	3.6	9	100	0	64	21	12	9	56	1.64
51504397--51504510	45	2.5	45	81	2	122	43	17	20	18	1.88
51504672--51504797	56	2.2	57	90	1	191	44	13	22	19	1.86
51514571--51514601	16	1.9	16	93	0	53	32	0	25	41	1.56
51525541--51525745	40	5.1	40	85	2	252	21	27	19	32	1.97
51525618--51525684	20	3.3	20	74	0	71	19	34	20	25	1.96
51525541--51525745	81	2.6	80	85	3	252	21	27	19	32	1.97
51525638--51525702	20	3.2	20	72	8	69	16	32	18	32	1.94
51530650--51530693	20	2.2	20	88	8	63	61	6	0	31	1.22
51532197--51532257	20	3.0	20	74	9	61	13	24	19	42	1.87
51535105--51535139	11	3.3	11	96	4	63	25	17	22	34	1.96
51548623--51548673	22	2.3	23	86	6	70	37	5	1	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51549178--51549493	124	2.5	124	90	2	492	31	17	22	28	1.96
51552540--51552753	53	4.1	53	69	20	180	39	5	7	47	1.54
51552829--51553194	21	17.5	21	84	8	471	24	0	30	44	1.56
51552801--51552854	15	3.8	15	69	14	51	25	0	33	40	1.56
51552829--51553194	43	8.8	42	86	6	471	24	0	30	44	1.56
51553141--51553178	17	2.3	17	81	4	51	23	0	28	47	1.52
51552831--51553102	22	12.6	22	90	3	421	24	0	30	44	1.57
51553182--51553207	13	2.0	13	100	0	52	15	0	46	38	1.46
51553760--51553802	18	2.4	18	88	0	59	44	9	27	18	1.80
51554450--51554475	7	3.7	7	100	0	52	57	15	0	26	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211