genome.fa.s14.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  40  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525428--10525476	24	2.2	21	89	10	71	28	2	0	69	1.00
10527294--10527338	17	2.8	16	83	12	56	37	2	6	53	1.40
10529014--10529049	3	12.0	3	100	0	72	33	0	33	33	1.58
10531186--10531246	31	2.0	31	90	0	95	27	8	14	49	1.72
10531820--10531851	9	3.6	9	91	0	55	25	12	21	40	1.88
10531902--10531938	9	4.1	9	92	0	65	45	13	10	29	1.77
10532367--10532414	21	2.3	20	82	13	53	66	14	0	18	1.25
10542533--10542600	31	2.2	30	82	7	75	55	16	2	25	1.54
10546338--10546587	139	1.8	137	85	5	351	37	9	10	43	1.71
10546472--10546700	118	1.9	120	85	7	324	37	7	10	45	1.66
10561022--10561064	3	14.3	3	90	9	70	62	2	0	34	1.08
10563131--10563170	21	1.9	21	89	0	62	47	25	0	27	1.52
10564429--10564473	20	2.2	20	84	7	56	24	22	8	44	1.81
10575108--10575141	3	11.0	3	93	6	59	64	2	32	0	1.08
10575949--10575976	3	9.3	3	100	0	56	32	0	0	67	0.91
10580568--10580643	32	2.5	31	75	14	77	38	17	1	43	1.57
10585788--10585822	10	3.4	10	96	4	61	77	0	8	14	0.99
10588900--10589407	44	10.9	44	72	13	275	32	17	18	31	1.94
10588941--10589402	95	4.9	95	86	0	611	32	17	18	32	1.94
10588986--10589370	51	8.0	51	72	12	310	33	17	17	31	1.93
10589321--10589436	44	2.6	44	87	0	133	31	17	21	30	1.96
10590948--10591037	4	22.8	4	72	15	62	23	8	0	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10591031--10591087	22	2.6	21	78	10	60	19	12	0	68	1.20
10591045--10591079	15	2.3	15	95	0	61	14	14	0	71	1.15
10598287--10598349	31	2.0	31	90	0	99	31	22	1	44	1.62
10598357--10598398	17	2.5	17	88	7	59	30	0	0	69	0.89
10608635--10608681	21	2.2	22	92	3	78	21	38	19	21	1.94
10630968--10631246	115	2.5	109	91	4	436	35	18	15	29	1.93
10631137--10631161	8	3.1	8	100	0	50	52	0	0	48	1.00
10633072--10633105	17	2.0	17	88	0	50	50	11	20	17	1.77
10634037--10634145	41	2.7	41	88	0	146	28	20	22	29	1.98
10634498--10634569	20	3.3	20	71	17	72	33	5	15	45	1.69
10634495--10634582	45	2.0	43	95	4	158	32	6	15	44	1.73
10635005--10635038	17	1.9	18	88	5	52	38	2	0	58	1.13
10643077--10643783	100	7.1	100	87	2	967	32	22	21	23	1.98
10643107--10643778	50	13.5	50	70	2	393	31	22	21	23	1.98
10643786--10644023	89	2.7	89	90	1	361	31	23	22	22	1.99
10643786--10644011	45	5.1	45	69	11	169	30	23	23	23	1.99
10644062--10644400	132	2.6	131	89	0	480	33	16	23	27	1.96
10645511--10645541	12	2.6	12	100	0	62	29	48	22	0	1.51
10646196--10646259	27	2.4	27	76	7	67	17	4	1	76	1.03
10646219--10646253	17	2.1	16	89	5	52	14	5	0	80	0.89
10646202--10646241	13	2.9	14	88	7	64	12	5	2	80	0.98
10646597--10646621	8	3.1	8	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10646605--10646796	107	1.8	107	90	1	314	31	13	17	38	1.88
10648066--10648122	24	2.4	24	84	0	69	14	5	61	19	1.51
10648125--10648159	18	1.9	18	88	0	52	0	11	60	28	1.32
10648144--10648187	18	2.4	18	88	7	63	6	4	63	25	1.38
10648138--10648252	24	5.2	23	71	16	73	7	5	60	26	1.45
10648144--10648229	21	4.4	18	71	16	64	9	4	62	23	1.44
10648162--10648265	24	4.3	24	78	4	84	9	4	61	24	1.46
10648261--10648303	18	2.4	18	80	0	50	9	6	60	23	1.51
10649063--10649100	19	2.0	19	85	10	51	52	5	2	39	1.38
10649111--10649147	18	2.1	18	89	0	56	56	2	0	40	1.13
10649137--10649176	19	2.1	19	86	9	55	70	2	0	27	1.01
10649116--10649171	29	2.0	28	85	3	76	64	1	0	33	1.04
10653092--10653129	18	2.1	18	85	9	51	36	2	2	57	1.26
10653667--10653745	36	2.3	34	89	8	117	50	2	5	41	1.38
10653822--10653861	19	2.2	18	91	8	64	55	2	0	42	1.13
10653914--10653978	29	2.3	29	81	7	71	36	3	10	49	1.53
10656715--10656775	31	2.0	31	90	6	97	57	0	1	40	1.08
10656715--10656766	11	4.9	11	77	17	65	53	0	1	44	1.11
10657615--10657718	44	2.7	35	76	23	127	43	19	7	29	1.79
10657648--10657715	23	3.0	23	67	16	70	41	17	7	33	1.77
10657636--10657706	23	3.2	23	69	15	76	40	19	7	32	1.79
10665421--10665598	42	4.2	42	85	5	220	28	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10677685--10677742	30	1.9	30	89	0	89	41	3	24	31	1.71
10677954--10677985	13	2.5	13	94	0	55	31	0	12	56	1.37
10678080--10678321	50	4.7	50	86	4	297	26	24	29	19	1.99
10678080--10678329	100	2.4	103	88	6	364	26	24	29	20	1.99
10681146--10681199	17	3.2	16	78	17	56	70	7	5	16	1.30
10683782--10683806	3	8.3	3	100	0	50	36	0	0	64	0.94
10686726--10686920	98	2.0	98	95	0	354	36	24	10	28	1.88
10687574--10687621	25	2.0	25	91	4	80	56	4	8	31	1.48
10688191--10688290	23	4.6	22	78	16	75	41	16	6	37	1.72
10688204--10688322	19	5.8	19	82	11	112	37	15	9	36	1.80
10688220--10688322	42	2.7	38	83	14	138	35	16	9	37	1.82
10703711--10703753	21	2.0	21	95	0	77	27	0	37	34	1.57
10703734--10703766	16	2.1	16	94	0	57	33	0	36	30	1.58
10703745--10703839	45	2.1	44	88	1	136	34	5	27	32	1.79
10704001--10704035	18	2.0	17	88	5	52	54	0	0	45	0.99
10703959--10704031	27	2.7	27	76	8	76	52	2	0	45	1.15
10703920--10704191	144	1.9	147	94	3	487	46	3	2	47	1.34
10704145--10704179	18	2.0	17	88	5	52	54	0	0	45	0.99
10704165--10704343	55	3.1	54	65	20	135	49	7	1	41	1.40
10704160--10704347	61	3.1	61	70	14	199	50	6	1	41	1.39
10704128--10704350	120	1.9	120	97	0	419	49	6	1	42	1.38
10704265--10704299	18	2.0	17	88	5	52	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10704340--10704386	17	2.9	16	78	18	53	46	2	6	44	1.40
10704359--10704392	17	2.0	17	94	0	59	50	0	5	44	1.26
10704425--10704619	93	2.1	92	88	4	286	47	4	4	44	1.41
10713496--10713572	28	2.7	28	76	7	84	58	7	5	28	1.48
10714437--10714489	25	2.2	24	86	3	70	47	0	15	37	1.45
10715136--10715167	4	8.0	4	100	0	64	25	0	25	50	1.50
10718712--10718840	49	2.6	49	76	6	127	28	22	24	24	1.99
10725661--10725734	31	2.4	31	93	0	121	29	10	10	48	1.72
10725661--10725743	31	2.7	31	90	0	103	30	10	12	46	1.75
10732830--10733354	41	12.8	40	84	2	600	21	20	27	30	1.98
10733824--10733858	18	1.9	18	88	0	52	57	2	0	40	1.14
10738486--10738606	50	2.7	43	76	18	127	27	14	27	30	1.95
10738498--10738597	50	2.0	51	92	5	168	26	14	29	31	1.94
10743431--10743526	26	3.7	26	75	9	70	28	3	5	63	1.31
10752206--10753788	789	2.0	789	96	0	2914	35	14	22	27	1.93
10757889--10757922	16	2.2	16	89	5	52	29	5	8	55	1.54
10758471--10758549	36	2.3	36	80	10	94	50	1	0	48	1.08
10760774--10760911	66	2.1	65	87	4	197	42	9	13	34	1.77
10763684--10763731	24	2.0	25	87	4	71	16	18	22	41	1.90
10766545--10766601	20	2.9	19	86	5	69	26	15	36	21	1.93
10770094--10770445	126	2.8	126	87	2	521	29	15	21	33	1.94
10773998--10774042	23	2.0	23	82	8	56	33	4	11	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10774622--10775053	83	5.2	83	87	4	599	28	20	23	27	1.99
10774646--10775053	41	9.9	41	82	10	323	28	20	23	27	1.99
10776818--10777035	116	1.9	116	95	0	391	41	9	9	38	1.71
10777122--10777177	22	2.5	22	94	2	94	37	1	32	28	1.68
10779200--10779240	15	2.7	15	88	0	55	34	2	4	58	1.32
10779290--10779344	20	2.5	24	77	22	66	30	5	5	58	1.44
10781395--10781960	154	3.7	153	91	3	868	50	8	10	31	1.65
10790255--10790316	3	20.7	3	100	0	124	67	0	0	32	0.91
10814974--10815004	5	6.2	5	100	0	62	41	19	19	19	1.90
10815486--10815533	19	2.6	19	78	18	57	60	0	2	37	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211