genome.fa.s14.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  134  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39366074--39366250	80	2.2	80	90	0	273	33	27	20	17	1.95
39377009--39377065	27	2.1	27	90	0	87	36	21	12	29	1.90
39381430--39381509	40	2.0	40	82	4	99	15	31	20	33	1.93
39381461--39381536	20	3.8	20	84	3	82	11	36	22	28	1.90
39381481--39381590	40	2.8	40	82	8	134	14	33	21	30	1.93
39381460--39381590	20	6.6	19	73	7	75	13	33	21	31	1.92
39383403--39383458	19	2.9	19	70	15	53	39	17	5	37	1.73
39384330--39384390	23	2.5	25	79	15	74	31	21	24	22	1.98
39384330--39384424	26	3.8	24	72	13	68	32	20	24	23	1.98
39388280--39388313	18	2.0	18	88	11	54	61	0	5	32	1.20
39391170--39391387	40	5.5	39	87	3	233	26	20	27	26	1.99
39393826--39393894	26	2.7	26	81	4	77	26	24	26	23	2.00
39397811--39397843	15	2.2	15	94	0	57	42	9	18	30	1.81
39398013--39398057	22	2.0	22	83	8	56	40	4	0	55	1.20
39404465--39404775	27	11.7	26	76	8	268	40	18	21	20	1.92
39404465--39404776	53	5.8	51	76	8	239	40	18	21	20	1.92
39404465--39404789	80	4.1	77	79	9	314	40	17	21	20	1.92
39411464--39411638	27	6.6	27	81	5	180	41	17	22	18	1.90
39411464--39411640	80	2.2	79	82	4	214	40	18	22	18	1.91
39411464--39411636	53	3.3	54	83	4	194	41	16	23	19	1.90
39412009--39412062	28	1.9	28	96	0	99	24	24	24	27	2.00
39412011--39412082	28	2.6	28	86	0	90	23	22	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39415753--39415908	73	2.2	71	88	2	222	29	20	25	24	1.99
39415808--39416299	114	4.3	113	82	3	576	26	20	25	27	1.99
39415808--39416303	229	2.2	226	82	5	604	27	20	24	27	1.99
39416558--39416606	14	3.4	14	88	2	71	22	0	38	38	1.54
39416923--39416971	7	6.9	7	76	4	53	20	0	46	32	1.51
39416919--39416986	15	4.7	15	80	10	63	22	0	44	33	1.53
39417554--39417838	106	2.7	107	92	4	459	48	10	11	29	1.73
39417740--39417909	82	2.0	83	91	4	272	51	10	8	30	1.66
39417984--39418410	107	3.9	106	86	6	511	49	11	10	29	1.71
39421273--39421537	43	6.2	43	79	0	246	27	18	26	27	1.98
39421844--39421884	21	2.0	22	85	9	59	29	14	0	56	1.39
39445996--39446179	39	4.6	41	82	11	206	24	22	27	25	2.00
39445996--39446179	79	2.3	80	83	8	225	24	22	27	25	2.00
39446049--39446212	78	2.1	79	83	7	201	26	21	27	25	1.99
39453926--39454109	39	4.6	41	82	11	206	24	22	27	25	2.00
39453926--39454109	79	2.3	80	83	8	225	24	22	27	25	2.00
39453979--39454142	78	2.1	79	83	7	201	26	21	27	25	1.99
39458825--39458946	50	2.5	49	87	1	163	22	14	31	30	1.94
39459041--39459172	66	2.0	66	92	2	221	41	5	28	25	1.77
39461113--39461181	35	2.0	35	88	0	102	47	0	26	26	1.52
39461498--39461541	16	2.6	18	76	23	51	11	15	0	72	1.11
39464280--39464336	18	3.2	17	73	11	53	28	17	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39473194--39473253	31	1.9	31	93	0	102	26	3	30	40	1.72
39476703--39476764	30	2.1	30	96	0	115	32	6	25	35	1.82
39482313--39482378	33	2.0	33	96	0	123	19	9	34	36	1.84
39488347--39488379	16	2.1	16	94	0	57	51	6	6	36	1.51
39490446--39490621	96	1.8	96	93	0	307	33	16	15	34	1.90
39497549--39497605	6	9.5	6	77	7	62	15	3	3	77	1.05
39507651--39507690	20	2.0	20	100	0	80	25	10	25	40	1.86
39512960--39513028	24	2.9	24	88	0	93	26	18	24	30	1.98
39512984--39513135	64	2.4	64	86	2	207	25	17	24	32	1.97
39521574--39521706	69	1.9	70	90	1	214	32	14	16	36	1.89
39523094--39523353	47	5.6	47	93	0	416	33	8	30	28	1.87
39525541--39525688	25	6.0	24	73	10	102	25	23	19	31	1.98
39525626--39525692	24	2.8	24	79	6	73	31	25	16	26	1.96
39527845--39528067	50	4.5	50	78	2	207	22	28	21	26	1.99
39527845--39528067	100	2.2	99	81	5	245	22	28	21	26	1.99
39527988--39528151	84	2.0	84	88	0	247	21	33	21	23	1.97
39528072--39528169	50	2.0	50	91	0	160	20	31	21	26	1.98
39533156--39533189	17	1.9	18	88	5	52	32	5	0	61	1.20
39545291--39545379	30	2.9	30	76	14	92	42	0	11	46	1.39
39545301--39545396	30	3.1	31	74	18	92	42	0	10	46	1.38
39545301--39545396	32	3.1	32	75	15	94	42	0	10	46	1.38
39545757--39545793	14	2.6	14	91	0	56	18	5	10	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39545957--39545981	9	2.8	9	100	0	50	32	0	0	68	0.90
39545996--39546026	11	2.8	11	90	0	53	67	0	0	32	0.91
39550897--39551056	28	5.6	28	68	12	101	61	2	0	35	1.14
39550886--39551044	39	4.1	39	65	26	113	60	3	0	36	1.13
39550885--39551056	52	3.1	52	70	19	166	59	2	0	36	1.17
39550897--39551068	76	2.4	71	80	14	185	61	2	0	36	1.13
39550907--39551066	39	4.2	39	75	12	186	60	2	0	36	1.15
39553521--39553651	61	2.2	57	82	5	145	48	3	5	41	1.44
39553609--39553645	17	2.2	17	85	4	58	51	0	0	48	1.00
39557403--39557449	20	2.4	19	86	10	60	51	0	10	38	1.37
39566964--39567111	72	2.0	73	88	6	221	43	12	10	33	1.77
39567101--39567287	87	2.1	88	85	1	241	47	8	7	36	1.62
39576052--39576103	15	3.2	15	73	19	50	44	0	1	53	1.11
39576090--39576151	29	2.2	29	86	8	85	56	0	0	43	0.99
39583202--39583242	18	2.3	19	79	8	50	70	2	17	9	1.25
39590705--39590753	23	2.1	23	92	0	80	36	16	10	36	1.82
39593750--39593828	42	1.9	41	81	2	95	31	20	22	25	1.98
39593794--39594120	50	6.6	50	80	3	297	25	21	29	23	1.99
39595612--39595662	23	2.2	23	89	0	75	41	19	9	29	1.84
39595867--39596140	137	2.0	137	97	0	521	41	9	21	27	1.84
39606583--39606707	41	3.0	41	100	0	250	31	16	12	40	1.84
39606615--39606681	21	3.2	21	67	12	66	31	14	11	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39610454--39610488	17	2.1	17	100	0	70	31	22	22	22	1.98
39615776--39615887	25	4.5	25	83	0	152	22	21	25	31	1.98
39631694--39631726	16	2.0	17	88	5	50	60	0	12	27	1.32
39637004--39637151	50	2.9	51	81	9	162	41	11	13	33	1.80
39641699--39641728	14	2.1	14	93	0	51	40	0	43	16	1.48
39642486--39642532	24	1.9	25	83	12	62	40	19	8	31	1.81
39652653--39652696	22	2.0	21	83	12	54	40	0	0	59	0.98
39653478--39653542	34	1.9	34	93	0	112	44	9	21	24	1.81
39656074--39656304	102	2.3	102	88	0	345	23	17	26	32	1.97
39656207--39656405	75	2.6	76	86	4	276	23	16	27	33	1.96
39658561--39658593	14	2.5	14	90	9	52	24	9	6	60	1.49
39664480--39664667	50	3.8	49	81	7	218	32	26	13	28	1.93
39664480--39664667	101	1.9	101	84	4	254	32	26	13	28	1.93
39666002--39666049	22	2.3	22	85	7	64	60	8	4	27	1.44
39675916--39675959	22	1.9	22	86	9	61	38	15	2	43	1.60
39676755--39676831	40	1.9	39	82	10	93	33	24	19	22	1.97
39678805--39678874	25	2.8	24	78	8	79	25	22	24	27	2.00
39678990--39679026	19	1.9	20	94	5	67	54	18	0	27	1.44
39683358--39683404	22	2.1	22	92	0	76	25	10	23	40	1.87
39683358--39683415	22	2.6	22	86	0	62	24	12	22	41	1.87
39690831--39691102	50	5.4	50	87	3	359	22	29	20	27	1.98
39698808--39699033	40	5.7	40	87	4	271	27	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39709561--39709681	60	2.0	60	98	0	233	40	8	20	30	1.82
39711245--39711420	88	2.0	88	89	0	271	23	10	23	41	1.86
39737218--39737285	31	2.2	31	97	2	129	23	19	22	35	1.96
39750746--39750782	19	1.9	19	100	0	74	29	16	10	43	1.82
39756047--39756105	20	3.0	20	76	0	64	42	16	5	35	1.71
39756289--39756412	23	5.3	22	76	14	99	33	18	25	22	1.97
39756272--39756412	23	6.0	22	74	10	95	33	18	24	23	1.97
39756272--39756390	45	2.6	46	80	5	125	34	17	24	23	1.96
39756559--39757075	67	7.8	67	88	1	761	41	18	2	36	1.64
39756559--39757075	133	3.9	134	93	1	842	41	18	2	36	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211