genome.fa.s14.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  110  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792583--30792620	17	2.2	18	90	4	60	26	50	15	7	1.72
30798852--30799034	50	3.5	53	76	10	155	27	19	28	24	1.98
30807411--30807602	40	4.8	40	90	2	253	25	30	21	21	1.99
30823432--30823623	40	4.8	40	90	2	253	25	30	21	21	1.99
30830451--30830725	30	9.2	30	75	6	209	24	24	13	38	1.91
30835454--30835499	22	2.1	22	87	0	65	67	4	17	10	1.37
30841554--30841613	31	1.9	31	83	12	79	36	6	0	56	1.26
30850677--30850706	12	2.4	13	94	5	53	66	6	6	20	1.38
30852263--30852299	14	2.4	17	78	21	53	29	18	5	45	1.72
30881234--30881264	15	2.1	15	100	0	62	32	9	19	38	1.84
30887666--30887865	32	6.3	32	86	0	258	36	20	20	23	1.95
30887666--30887865	96	2.1	95	89	0	301	36	20	20	23	1.95
30887859--30887924	26	2.5	26	80	0	69	36	24	19	19	1.95
30887912--30887975	27	2.4	27	84	7	78	34	23	21	20	1.97
30888039--30888094	24	2.3	24	87	0	76	50	19	7	23	1.72
30888052--30888173	24	5.1	24	76	4	102	45	18	6	28	1.74
30888054--30888173	48	2.5	48	79	2	125	45	19	6	29	1.75
30888179--30888264	27	3.2	27	84	0	64	26	17	24	31	1.97
30888179--30888291	54	2.1	54	81	0	127	24	18	24	31	1.97
30888191--30888296	27	3.9	27	89	0	158	21	20	22	34	1.96
30888198--30888311	27	4.2	27	86	0	93	21	22	21	35	1.96
30888306--30888389	27	3.1	28	82	3	84	23	17	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30892219--30892511	50	5.8	50	88	0	424	20	31	21	25	1.98
30923400--30923544	27	5.4	26	79	9	132	15	20	18	44	1.86
30923426--30923544	54	2.2	54	86	5	161	15	20	18	46	1.84
30930486--30930595	28	3.9	28	90	0	157	30	23	23	21	1.99
30930938--30931018	27	3.0	27	87	5	112	19	22	16	41	1.89
30946380--30946541	43	3.8	42	77	6	121	32	23	16	27	1.96
30953383--30953531	43	3.6	41	79	8	140	34	26	16	22	1.95
30953508--30953557	26	1.9	26	91	0	82	32	32	16	20	1.94
30953534--30953640	41	2.6	41	90	0	169	23	23	19	33	1.97
30953682--30953732	19	2.6	20	73	14	52	33	19	0	47	1.50
30959406--30959458	12	4.6	11	80	13	54	43	1	15	39	1.57
30964177--30964208	16	2.0	16	93	0	55	25	15	0	59	1.36
30975998--30976034	16	2.2	18	90	9	60	64	5	5	24	1.36
30978177--30978212	19	1.9	18	88	5	54	41	2	0	55	1.14
30978258--30978305	22	2.2	21	85	10	62	56	2	4	37	1.30
30984405--30984460	27	2.0	28	86	10	80	32	5	8	53	1.55
30985597--30985638	16	2.6	16	81	7	50	30	0	2	66	1.04
30990267--30990352	29	2.9	29	78	1	91	40	22	12	24	1.89
31009354--31009413	20	3.0	20	82	4	75	21	25	3	50	1.64
31013024--31013116	40	2.3	39	81	5	105	20	27	20	31	1.97
31028566--31028793	44	5.0	44	68	16	122	27	20	19	32	1.97
31028510--31028931	142	3.0	142	91	0	664	28	20	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31028703--31028795	44	2.1	44	85	0	123	30	23	16	30	1.96
31030219--31030251	14	2.5	14	90	9	52	18	15	0	66	1.25
31060623--31060686	31	2.1	31	93	0	110	21	10	29	37	1.88
31062673--31062727	16	3.5	15	76	16	58	25	0	0	74	0.82
31062687--31062727	21	2.0	21	85	9	57	21	0	0	78	0.76
31065615--31065851	43	5.6	43	79	5	214	37	24	15	22	1.93
31065580--31065767	85	2.2	85	86	3	256	37	25	14	22	1.93
31065615--31065851	128	1.9	128	85	1	332	37	24	15	22	1.93
31065960--31066010	19	2.6	20	73	14	52	33	19	0	47	1.50
31071191--31071215	11	2.3	11	100	0	50	72	0	16	12	1.13
31072395--31072635	40	6.1	39	88	2	252	24	29	14	31	1.95
31072429--31072494	20	3.3	20	64	8	53	27	34	13	24	1.93
31072489--31072553	20	3.2	20	65	16	53	18	36	10	33	1.86
31072393--31072609	80	2.7	80	84	2	303	23	31	15	29	1.95
31078203--31078341	43	3.3	42	82	9	158	23	12	25	38	1.89
31078342--31078511	43	4.0	43	77	5	157	29	15	20	34	1.94
31078286--31078419	70	1.9	68	80	8	155	30	14	21	33	1.93
31087497--31087557	27	2.3	27	86	5	81	18	13	22	45	1.83
31093440--31093523	19	4.4	18	82	8	80	38	8	17	35	1.80
31093442--31093516	19	3.8	19	91	6	123	37	9	16	37	1.80
31093443--31093505	21	3.1	21	95	4	112	38	9	14	38	1.78
31093455--31093539	21	4.0	22	79	14	81	37	7	16	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31093505--31093549	23	2.0	23	86	4	65	33	4	15	46	1.66
31094136--31094214	26	2.9	27	75	9	72	32	1	5	60	1.26
31094136--31094221	22	3.4	26	73	16	74	31	1	4	62	1.23
31098438--31098482	6	7.7	6	95	5	83	84	0	15	0	0.62
31099686--31100150	176	2.6	173	81	4	547	29	14	25	30	1.95
31099686--31100149	44	10.5	44	76	6	415	29	14	25	30	1.95
31100271--31100476	44	4.7	44	78	9	206	25	16	27	30	1.97
31101317--31101370	19	2.8	19	97	0	99	37	9	16	37	1.81
31102009--31102077	26	2.7	26	79	2	77	31	1	1	65	1.11
31125883--31125936	28	2.0	27	85	3	72	35	25	20	18	1.95
31128345--31128430	45	1.9	45	97	0	163	45	25	4	24	1.72
31131030--31131098	21	3.3	21	80	8	61	13	26	27	33	1.93
31131969--31132036	34	2.0	34	100	0	136	23	32	2	41	1.69
31131979--31132033	17	3.2	17	71	19	60	21	30	1	45	1.62
31133289--31133410	43	2.9	43	86	1	165	22	33	22	21	1.97
31133289--31133422	42	3.2	42	85	1	178	20	32	23	23	1.98
31142629--31142679	26	2.0	26	84	0	66	35	17	25	21	1.95
31142673--31142737	22	3.0	22	81	0	76	44	16	20	18	1.87
31142729--31142899	32	5.4	32	83	6	213	39	21	18	20	1.92
31142918--31142973	27	2.1	27	83	6	69	35	19	25	19	1.95
31143103--31143930	27	30.7	27	83	3	873	25	21	18	34	1.96
31145896--31146055	43	3.8	43	76	8	150	28	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31145895--31146065	83	2.0	84	82	3	202	27	14	26	31	1.95
31149220--31149387	47	3.6	47	89	5	250	27	29	8	33	1.86
31149593--31149703	39	2.8	40	85	6	138	24	27	22	25	2.00
31167445--31167492	24	2.0	24	87	0	69	16	10	27	45	1.80
31175870--31176159	27	10.8	27	83	2	323	18	14	20	46	1.84
31175869--31176162	81	3.7	80	82	4	360	18	14	20	46	1.84
31184985--31185018	16	2.2	15	89	5	50	44	0	0	55	0.99
31185675--31185733	25	2.4	24	83	13	75	37	1	1	59	1.18
31201378--31201422	23	1.9	24	86	4	65	26	51	2	20	1.59
31203305--31203449	72	2.0	72	97	0	272	33	28	15	22	1.94
31205588--31205619	15	2.1	15	94	0	55	15	31	3	50	1.60
31207033--31207074	22	2.1	19	86	13	57	45	2	0	52	1.13
31208668--31208705	3	12.7	3	88	0	58	65	2	31	0	1.06
31210665--31210716	10	5.0	10	79	9	50	34	1	3	59	1.27
31217501--31217832	27	12.3	27	82	3	357	21	16	19	42	1.89
31223885--31224010	30	4.2	30	76	4	128	23	28	11	35	1.91
31228357--31228541	79	2.3	81	83	7	227	24	22	27	24	2.00
31228358--31228541	40	4.6	40	82	9	207	25	22	27	24	2.00
31228410--31228574	79	2.1	79	83	6	201	26	21	27	24	1.99
31234752--31234908	79	2.0	79	81	7	185	27	19	26	26	1.99
31234689--31234873	40	4.7	40	78	6	189	25	21	26	25	2.00
31236313--31236340	6	4.7	6	100	0	56	17	28	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31242326--31242368	18	2.4	18	88	0	59	41	44	2	11	1.53
31242466--31242514	9	5.4	9	82	0	62	28	12	18	40	1.86
31247871--31248043	26	6.7	26	81	6	181	39	19	12	28	1.88
31247871--31248043	52	3.3	51	84	7	217	39	19	12	28	1.88
31247871--31248043	78	2.2	78	85	4	224	39	19	12	28	1.88
31270175--31270235	31	2.0	30	84	9	79	36	14	6	42	1.72
31270379--31270428	25	2.0	25	88	7	75	24	20	24	32	1.98
31270851--31270892	22	1.9	23	90	9	70	47	14	0	38	1.44
31285047--31285094	21	2.2	23	85	7	64	58	6	0	35	1.23
31285132--31285181	20	2.5	21	83	9	68	46	4	0	50	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211