genome.fa.s14.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  174  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51556906--51557021	61	1.9	58	87	5	169	50	3	3	43	1.36
51557001--51557059	30	2.0	30	83	6	75	47	5	3	44	1.42
51558349--51558378	15	2.0	15	93	0	51	50	0	0	50	1.00
51558345--51558397	26	2.0	26	85	7	72	49	1	0	49	1.12
51558348--51558405	26	2.2	26	81	6	64	51	1	1	44	1.21
51564668--51564710	18	2.3	18	84	11	52	18	0	30	51	1.47
51565957--51566014	25	2.6	20	72	25	53	36	41	6	15	1.74
51565958--51566009	25	2.1	25	100	0	104	34	40	7	17	1.78
51567971--51568030	24	2.6	22	76	19	61	60	10	0	30	1.30
51568936--51569070	68	2.0	68	86	1	189	48	4	3	42	1.40
51569048--51569080	17	2.0	17	88	5	50	48	0	0	51	1.00
51568945--51569089	68	2.1	69	80	3	159	50	2	3	43	1.33
51574002--51574137	56	2.6	54	82	6	154	25	27	19	26	1.99
51579209--51579277	23	3.1	23	83	8	81	47	20	20	11	1.80
51583066--51583104	15	2.4	17	79	20	55	38	17	0	43	1.50
51583070--51583104	15	2.2	16	95	5	63	37	17	0	45	1.48
51584531--51584574	22	1.9	24	86	9	65	40	9	2	47	1.48
51588770--51588810	15	2.7	15	84	3	55	41	0	0	58	0.98
51588770--51588810	16	2.6	16	88	3	66	41	0	0	58	0.98
51588770--51588817	16	3.0	16	85	14	64	39	0	0	60	0.97
51589267--51589325	16	3.6	16	80	13	66	40	0	3	55	1.16
51590270--51590315	23	2.0	23	83	12	58	17	13	0	69	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51593470--51593502	5	6.8	5	89	3	50	39	0	24	36	1.56
51600879--51601073	98	2.0	98	95	0	354	36	24	10	28	1.88
51601351--51601375	9	2.8	9	100	0	50	68	8	0	24	1.16
51602009--51602043	3	11.7	3	93	0	61	65	0	2	31	1.07
51601991--51602042	18	2.9	18	88	0	68	61	5	1	30	1.30
51604731--51604775	23	2.0	23	91	4	74	48	15	4	31	1.65
51604764--51604817	19	2.8	19	91	0	90	38	16	5	38	1.72
51605240--51605285	17	2.7	17	80	12	58	56	0	0	43	0.99
51608809--51608903	40	2.3	40	90	3	145	0	28	8	63	1.24
51608913--51608954	22	1.9	22	81	18	52	57	0	0	42	0.99
51610589--51610628	12	3.3	12	78	0	53	60	17	12	10	1.59
51610580--51610628	24	2.0	24	100	0	98	55	20	12	12	1.68
51610920--51610947	13	2.2	13	100	0	56	46	25	7	21	1.76
51611901--51611993	25	3.8	24	83	11	118	35	19	24	20	1.96
51615282--51615375	40	2.3	39	89	5	134	0	27	8	63	1.23
51615385--51615428	5	8.6	5	83	11	54	61	0	0	38	0.96
51627713--51627876	49	3.4	48	68	9	136	27	13	15	43	1.84
51627721--51627914	96	2.0	97	92	1	327	25	14	14	45	1.83
51628415--51628476	19	3.3	19	68	4	63	38	12	1	46	1.52
51628403--51628477	37	2.0	37	97	0	141	40	12	2	45	1.55
51628727--51628954	76	3.0	76	95	1	408	35	7	14	41	1.75
51629327--51629414	44	2.0	44	88	0	131	43	10	14	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51631304--51631397	27	3.5	27	79	5	73	42	18	21	18	1.89
51631333--51631432	27	3.7	27	80	5	103	40	17	24	19	1.91
51633500--51635113	850	1.9	838	84	4	2123	34	12	19	33	1.89
51635459--51635488	12	2.6	12	94	5	53	53	10	0	36	1.35
51646652--51646753	41	2.6	38	77	8	114	34	3	9	51	1.53
51648756--51648872	57	2.1	57	85	3	155	43	7	20	28	1.79
51650150--51650224	35	2.1	37	87	7	109	41	6	8	44	1.60
51652756--51652798	21	2.0	21	90	4	68	41	0	4	53	1.21
51687345--51687455	19	5.8	19	89	0	177	39	9	13	37	1.76
51687352--51687455	38	2.7	38	98	0	199	40	8	12	38	1.74
51687345--51687481	19	6.9	20	84	5	131	38	8	13	38	1.76
51690318--51690363	24	1.9	24	82	8	58	41	15	28	15	1.87
51694322--51695348	132	7.8	132	92	0	1594	28	18	23	29	1.97
51695674--51695784	19	5.8	19	85	0	159	39	8	12	39	1.73
51695681--51695784	38	2.7	38	93	0	181	40	7	11	40	1.70
51695674--51695810	19	6.9	21	82	4	96	38	7	13	40	1.73
51706844--51707050	103	2.0	102	96	0	378	53	11	4	30	1.56
51713346--51713413	32	2.1	33	94	2	120	38	17	2	41	1.65
51717845--51717882	3	12.7	3	88	0	58	31	63	5	0	1.17
51722423--51722461	20	1.9	21	85	15	55	15	10	2	71	1.23
51734901--51734946	16	2.9	16	78	12	51	45	0	2	52	1.13
51734807--51735064	120	2.1	120	98	0	498	42	1	5	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51735021--51735062	15	2.7	16	82	14	52	45	0	2	52	1.13
51735012--51735053	15	2.9	15	82	10	52	47	0	0	52	1.00
51735190--51735297	45	2.5	45	82	8	129	32	30	4	32	1.78
51735278--51735329	16	3.2	16	94	0	86	34	36	0	28	1.58
51735641--51735712	31	2.4	30	86	4	99	34	11	12	41	1.78
51735751--51735806	29	1.9	29	85	7	78	44	0	7	48	1.30
51745186--51745225	19	2.1	19	95	0	71	37	17	17	27	1.92
51747259--51747293	13	2.7	13	100	0	70	37	22	17	22	1.94
51751625--51751702	31	2.5	31	87	4	113	23	19	14	43	1.87
51773702--51773757	24	2.5	22	76	5	58	44	7	0	48	1.30
51775521--51775561	21	2.0	21	85	9	57	34	0	0	65	0.93
51776132--51776182	21	2.5	21	81	15	70	39	0	17	43	1.49
51778873--51778905	3	11.3	3	93	6	59	30	0	0	69	0.88
51782649--51782687	18	2.3	18	86	8	55	76	5	5	12	1.11
51788539--51789290	138	5.5	138	92	1	1194	40	8	6	44	1.61
51790178--51790236	11	5.4	11	74	8	57	35	44	3	16	1.65
51790178--51790236	22	2.7	22	83	0	73	35	44	3	16	1.65
51796377--51796420	23	1.9	22	82	17	54	36	25	0	38	1.56
51796465--51796551	45	1.9	45	90	0	138	33	22	18	25	1.97
51796563--51796700	51	2.7	51	80	6	163	31	28	16	23	1.96
51805650--51805684	14	2.6	14	90	4	54	22	0	8	68	1.16
51808725--51808802	36	2.2	36	97	0	147	57	12	14	15	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51811430--51811484	22	2.5	22	84	0	65	29	20	25	25	1.99
51826107--51826147	21	2.0	21	85	0	55	41	17	7	34	1.77
51831402--51831461	28	2.1	28	87	0	84	31	15	16	36	1.90
51836833--51836939	20	5.3	20	77	4	90	13	30	17	38	1.88
51836823--51836939	40	2.9	40	74	2	110	13	29	17	38	1.89
51837078--51837104	7	3.9	7	100	0	54	44	0	14	40	1.46
51839461--51839489	13	2.2	13	100	0	58	41	0	0	58	0.98
51839920--51839955	16	2.2	16	90	9	56	13	11	0	75	1.06
51852780--51852813	17	1.9	18	94	5	61	0	29	38	32	1.58
51853382--51853424	13	3.1	14	84	12	54	60	0	0	39	0.97
51858725--51858788	25	2.6	25	90	2	94	29	20	28	21	1.98
51867821--51869553	866	2.0	866	98	0	3349	31	16	18	32	1.94
51876116--51876167	21	2.5	22	87	6	72	30	0	0	69	0.89
51878981--51879213	54	4.1	54	74	14	234	42	1	7	47	1.42
51878996--51879081	28	3.1	27	65	24	63	46	2	8	43	1.46
51879083--51879134	15	3.6	15	80	12	56	44	0	1	53	1.11
51879035--51879250	120	1.8	120	100	0	432	42	1	6	49	1.38
51879212--51879253	15	2.7	16	82	14	52	45	0	2	52	1.13
51879203--51879244	15	2.9	15	82	10	52	47	0	0	52	1.00
51879454--51879505	16	3.2	16	91	0	86	36	34	0	28	1.58
51881633--51881677	20	2.2	21	84	11	67	13	13	17	55	1.69
51883538--51883745	45	4.6	45	86	4	251	39	16	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51883711--51883824	41	2.7	41	82	8	122	50	14	19	16	1.79
51883711--51883869	86	1.8	85	86	2	228	47	14	20	18	1.83
51885196--51885265	26	2.7	26	90	0	113	28	30	20	21	1.98
51895435--51895479	21	2.1	21	87	0	63	46	0	20	33	1.51
51896077--51896112	16	2.2	16	100	0	72	38	0	13	47	1.44
51901522--51901593	26	2.8	26	78	0	72	31	19	9	38	1.84
51908509--51908538	15	2.0	15	93	0	51	33	36	6	23	1.81
51909829--51910043	106	2.0	109	97	2	409	35	13	6	43	1.71
51912566--51912673	3	36.0	3	78	0	81	32	8	2	56	1.43
51912583--51912664	21	3.8	21	84	9	110	36	10	0	52	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211