genome.fa.s14.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  150  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44484824--44484865	14	3.1	13	86	10	57	76	2	0	21	0.90
44486528--44486577	26	1.9	26	83	0	64	36	20	20	24	1.95
44486585--44486636	27	1.9	27	92	0	86	34	21	25	19	1.96
44491827--44491927	49	2.1	49	90	0	157	29	23	5	40	1.78
44498262--44498303	22	1.9	22	85	9	59	45	0	11	42	1.41
44508347--44508477	24	5.5	23	73	14	81	22	8	1	67	1.25
44536652--44536893	50	4.9	50	81	4	258	28	22	27	21	1.99
44547011--44547091	40	2.0	40	95	0	144	23	20	13	41	1.88
44548800--44548824	5	5.0	5	100	0	50	80	0	0	20	0.72
44550235--44550284	10	4.8	10	83	9	64	64	2	0	34	1.05
44550959--44551058	25	4.0	25	82	1	94	33	12	21	34	1.90
44550996--44551105	25	4.4	25	80	2	121	30	12	18	39	1.88
44553782--44553947	50	3.3	50	78	3	181	22	27	22	27	1.99
44561018--44561060	16	2.7	16	81	0	50	13	23	6	55	1.62
44572315--44572384	33	2.1	33	91	0	113	52	12	15	18	1.74
44573913--44574154	50	4.7	50	79	5	209	26	21	27	24	1.99
44576906--44576946	21	2.0	20	85	4	55	41	12	19	26	1.87
44580127--44580171	23	1.9	24	95	4	83	13	6	17	62	1.52
44586164--44586190	6	4.5	6	100	0	54	0	33	0	66	0.92
44593365--44593422	21	2.7	22	75	15	59	46	6	0	46	1.29
44599239--44599293	24	2.3	23	75	6	56	43	5	0	50	1.25
44605020--44605048	11	2.6	11	100	0	58	6	51	6	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44607517--44607576	31	2.0	31	90	3	95	43	5	13	38	1.66
44608736--44608777	22	1.9	22	90	0	66	59	30	2	7	1.37
44611642--44611666	12	2.1	12	100	0	50	24	28	32	16	1.96
44613015--44613202	45	4.2	45	80	4	193	36	25	15	22	1.94
44617746--44617794	16	2.9	17	81	9	55	48	0	8	42	1.32
44617906--44617968	30	2.1	30	100	0	126	39	25	15	19	1.91
44618568--44618618	27	1.9	27	84	11	70	15	13	7	62	1.52
44620159--44620444	110	2.7	106	86	3	403	35	18	15	31	1.92
44620558--44620622	4	16.0	4	77	15	62	70	6	1	21	1.17
44620567--44620642	37	2.2	33	84	11	98	71	7	2	18	1.23
44620917--44620984	3	23.3	3	75	14	54	67	2	2	26	1.19
44620928--44620984	22	2.6	21	86	5	69	70	3	1	24	1.13
44620949--44620987	13	3.0	13	92	7	62	74	0	0	25	0.82
44622197--44622926	132	5.6	132	88	4	1049	29	23	18	28	1.98
44622391--44622585	44	4.4	44	67	12	130	27	24	16	31	1.97
44622549--44622854	38	7.2	43	64	22	128	31	22	18	27	1.97
44624350--44624388	13	3.0	14	92	7	57	0	20	0	79	0.73
44624350--44624416	7	9.0	7	76	20	57	0	19	0	80	0.71
44624359--44624416	9	6.2	10	81	15	63	0	18	0	81	0.70
44628610--44628926	110	2.9	110	89	1	453	35	16	16	31	1.92
44629040--44629071	4	7.8	4	96	3	55	75	3	0	21	0.95
44631006--44631042	3	12.3	3	100	0	74	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44640229--44640308	37	2.2	37	95	0	142	46	15	0	38	1.46
44641124--44641163	15	2.7	15	92	0	71	35	35	2	27	1.71
44644217--44644362	39	3.7	39	80	0	166	32	3	19	44	1.68
44649963--44650156	99	2.0	100	87	1	282	22	30	21	25	1.98
44649963--44650301	50	6.6	50	83	6	326	23	29	20	26	1.99
44650112--44650248	56	2.4	56	92	0	238	27	28	18	26	1.98
44653088--44653154	30	2.2	30	84	5	82	25	19	7	47	1.75
44657405--44657517	25	4.5	25	82	0	118	18	44	12	24	1.84
44658968--44659021	19	2.8	19	91	0	90	35	9	18	37	1.83
44658968--44659047	19	3.9	21	83	8	78	35	7	18	38	1.79
44659504--44659538	6	5.7	6	96	3	61	20	0	0	80	0.72
44661223--44661315	32	3.2	28	70	19	91	48	5	2	44	1.37
44661176--44661314	59	2.4	59	95	0	242	45	5	2	46	1.42
44661174--44661279	32	3.5	31	67	23	89	43	6	3	46	1.47
44662466--44662593	66	1.9	66	80	3	150	42	18	25	14	1.88
44669927--44669970	18	2.4	18	88	0	61	36	0	31	31	1.58
44669927--44669959	6	5.5	6	100	0	66	36	0	30	33	1.58
44674045--44674094	25	2.0	24	81	11	57	68	0	0	32	0.90
44674060--44674111	24	2.1	24	82	7	59	61	0	0	38	0.96
44674140--44674188	6	8.2	6	95	0	89	16	36	0	46	1.47
44677140--44677338	51	3.8	50	79	6	184	27	20	28	23	1.99
44677575--44677613	12	3.2	12	85	0	51	51	5	23	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44683869--44683910	6	6.8	6	91	2	66	64	0	19	16	1.30
44685079--44685128	21	2.5	19	90	6	73	38	12	12	38	1.80
44685079--44685130	19	2.6	20	90	6	79	38	11	13	36	1.81
44687555--44687587	14	2.3	15	89	5	50	27	12	33	27	1.92
44688921--44689680	88	8.6	88	81	2	830	26	23	25	24	2.00
44688918--44689680	264	2.9	262	85	3	958	26	23	25	24	2.00
44689750--44689989	115	2.1	116	88	1	356	25	17	28	27	1.98
44689974--44690072	44	2.2	44	83	3	119	34	18	22	25	1.96
44690514--44690565	21	2.6	20	93	6	88	36	11	15	36	1.84
44691059--44691093	17	2.1	17	88	0	52	37	8	0	54	1.31
44691672--44691713	6	6.8	6	91	2	66	64	0	19	16	1.30
44692892--44692938	23	2.0	23	83	4	58	36	8	19	36	1.82
44693364--44693482	56	2.1	55	76	14	129	31	10	2	54	1.49
44693561--44693627	27	2.6	26	81	11	68	32	1	4	61	1.25
44693570--44693629	27	2.2	27	85	11	79	33	1	5	60	1.29
44693594--44693650	29	2.0	29	86	6	80	36	1	5	56	1.32
44697239--44697343	27	3.9	27	74	13	99	18	29	18	34	1.94
44697224--44697352	27	4.8	27	73	7	93	20	28	17	33	1.95
44710014--44710128	62	1.9	59	87	5	167	40	3	2	53	1.32
44724063--44724115	6	8.7	6	85	4	70	30	1	5	62	1.29
44727365--44727439	38	2.0	38	100	0	150	29	24	2	44	1.67
44729628--44729684	25	2.3	25	90	0	96	17	14	31	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44729640--44729699	25	2.4	25	82	0	66	26	16	23	33	1.96
44729760--44729866	25	4.3	25	80	2	117	19	16	29	33	1.94
44729566--44729815	130	1.9	130	88	1	376	24	18	25	30	1.98
44729760--44729866	50	2.1	50	85	0	142	19	16	29	33	1.94
44732089--44732127	19	2.1	19	100	0	78	53	15	5	25	1.62
44734321--44734391	26	2.7	26	84	0	97	28	21	25	25	1.99
44737716--44737962	50	4.8	50	81	4	228	27	20	28	23	1.99
44745506--44745573	16	4.2	16	92	0	109	29	0	35	35	1.58
44745554--44745644	45	2.0	44	82	2	110	29	5	28	36	1.80
44745789--44745830	15	2.7	16	82	14	52	52	2	0	45	1.13
44745798--44745839	15	2.9	15	82	10	52	52	0	0	47	1.00
44745787--44746055	120	2.2	121	93	3	456	49	4	2	42	1.37
44745905--44745950	16	2.9	16	78	12	51	52	2	0	45	1.13
44745905--44745959	15	3.7	15	79	13	53	52	1	0	45	1.11
44745837--44746024	61	3.1	61	68	14	181	48	6	2	42	1.42
44753446--44754630	599	2.0	600	94	0	2077	33	9	18	38	1.83
44758042--44758087	22	2.1	21	88	8	65	54	0	2	43	1.12
44758028--44758087	23	2.7	23	84	5	70	55	0	1	43	1.10
44760230--44760272	12	3.6	12	87	12	70	53	0	0	46	1.00
44760220--44760272	24	2.2	24	96	0	97	52	0	1	45	1.11
44761981--44762265	144	2.0	144	96	0	525	34	9	20	35	1.85
44767656--44767897	50	4.9	50	80	6	251	22	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44775744--44775787	23	1.9	23	90	9	72	31	47	0	20	1.50
44777710--44777886	39	4.5	39	84	1	212	28	3	21	45	1.69
44778653--44778693	20	2.0	20	86	9	57	29	17	19	34	1.94
44781385--44781496	54	2.0	55	84	3	145	43	7	20	28	1.78
44781471--44781512	6	6.8	6	86	2	57	57	0	26	16	1.40
44782626--44782746	57	2.1	57	84	7	165	51	4	19	23	1.67
44785050--44785102	25	2.2	24	82	3	61	45	3	0	50	1.19
44788108--44788172	30	2.2	30	81	15	73	36	0	21	41	1.53
44792955--44792999	19	2.3	20	92	3	74	20	13	15	51	1.76
44793083--44793123	16	2.4	17	88	8	57	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211