genome.fa.s14.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  24  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6486374--6486436	19	3.3	19	78	8	83	47	3	0	49	1.17
6486378--6486454	38	2.0	38	89	2	118	45	2	0	51	1.14
6487618--6487648	14	2.3	14	94	5	55	0	22	0	77	0.77
6487609--6487646	20	2.0	20	89	5	60	0	18	2	78	0.86
6500378--6500444	10	7.0	9	74	12	53	67	2	0	29	1.06
6500374--6500462	29	3.0	29	77	9	90	64	3	0	32	1.10
6500378--6500476	20	5.0	20	76	4	76	61	4	0	34	1.15
6500385--6500483	41	2.5	40	81	3	110	59	4	0	36	1.16
6502249--6502294	13	3.5	14	85	8	53	30	0	0	69	0.89
6503853--6503879	6	4.5	6	100	0	54	85	0	0	14	0.61
6506062--6506169	51	2.1	51	80	0	117	39	9	16	34	1.81
6507634--6508311	114	6.0	113	86	2	862	22	21	26	29	1.99
6507634--6508312	342	2.0	339	88	1	1000	22	21	26	29	1.99
6508545--6508578	14	2.3	15	90	5	52	35	0	29	35	1.58
6508612--6508678	14	5.1	13	82	10	82	19	1	49	29	1.57
6508627--6508678	7	7.7	7	82	8	72	19	0	50	30	1.48
6508627--6508694	21	3.3	20	78	12	59	22	0	47	30	1.52
6508772--6508843	35	2.1	35	89	0	108	22	1	45	30	1.61
6508653--6508925	131	2.1	130	83	6	338	26	0	33	39	1.59
6508778--6508846	7	9.9	7	83	0	84	20	1	49	28	1.58
6508772--6508846	21	3.6	21	81	0	96	21	1	48	29	1.59
6508811--6509001	96	2.0	96	84	2	249	26	1	29	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6509050--6509103	21	2.6	21	72	21	51	50	1	5	42	1.36
6509093--6509126	8	4.2	8	89	10	52	55	0	8	35	1.31
6509098--6509127	9	3.4	9	90	9	53	60	0	10	30	1.30
6509106--6509148	20	2.2	19	87	4	59	62	4	6	25	1.40
6509093--6509140	17	2.6	19	87	12	66	54	2	8	35	1.42
6509143--6509184	18	2.3	18	88	8	59	83	0	2	14	0.75
6509180--6509276	47	2.1	47	86	0	131	44	8	2	45	1.45
6511183--6511234	7	7.3	7	78	4	59	3	13	11	71	1.28
6511181--6511234	21	2.5	22	87	3	83	5	12	11	70	1.32
6511717--6511801	45	1.9	43	81	9	100	42	10	2	44	1.51
6511823--6511972	53	2.8	53	89	0	237	39	11	4	44	1.61
6511806--6511963	13	12.0	13	70	10	88	39	10	5	43	1.63
6512104--6512265	9	18.3	9	73	8	145	45	20	3	30	1.69
6514694--6514743	21	2.4	21	93	0	82	34	18	46	2	1.60
6517515--6517563	11	4.3	12	78	17	52	36	2	2	59	1.21
6522756--6522994	48	4.7	50	79	6	232	19	28	23	27	1.98
6522756--6522986	97	2.3	104	85	7	305	19	29	23	27	1.99
6523093--6523118	13	2.0	13	100	0	52	61	7	0	30	1.24
6523757--6524279	1	523.0	1	88	0	713	92	6	0	0	0.42
6535550--6535797	50	4.8	50	83	5	266	20	29	24	26	1.99
6535549--6535797	100	2.4	103	87	7	346	20	29	24	26	1.99
6535892--6535923	13	2.5	13	94	0	55	56	12	0	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6536135--6536192	30	1.9	30	89	0	89	31	24	3	41	1.71
6538426--6538696	125	2.2	124	91	2	454	26	21	19	32	1.97
6548895--6548925	14	2.3	13	94	5	53	61	6	6	25	1.45
6564549--6564585	18	2.1	18	90	10	58	51	21	13	13	1.75
6573483--6573552	23	3.0	24	72	16	65	5	21	5	67	1.33
6577276--6577323	24	2.0	24	100	0	96	37	8	12	41	1.73
6580226--6580253	6	4.7	6	100	0	56	17	17	14	50	1.79
6580817--6581333	277	1.8	281	80	7	620	17	13	17	50	1.77
6590785--6590837	27	2.0	27	100	0	106	18	24	30	26	1.98
6590718--6590964	102	2.5	95	88	10	395	19	20	29	30	1.97
6590889--6590966	27	2.9	27	98	0	147	16	24	30	28	1.97
6590785--6591042	129	2.0	130	94	0	455	20	20	27	30	1.98
6593022--6593136	41	2.8	40	86	5	133	26	20	25	27	1.99
6593371--6593838	230	2.0	229	97	1	884	36	6	16	40	1.74
6595062--6595098	6	5.8	6	90	9	56	45	16	16	21	1.84
6595073--6595182	45	2.4	45	83	5	159	43	20	16	20	1.88
6595085--6595199	45	2.8	41	80	9	110	40	21	18	20	1.92
6596398--6596437	17	2.3	17	86	4	53	5	15	7	72	1.24
6596453--6596484	16	1.9	17	93	6	57	53	3	0	43	1.16
6596597--6596649	22	2.6	19	81	16	70	52	0	0	47	1.00
6596602--6596648	11	4.3	11	77	20	53	57	0	0	42	0.98
6596619--6596648	14	2.1	14	100	0	60	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6600937--6601045	35	3.1	35	74	17	125	55	2	2	38	1.28
6600943--6601053	36	3.1	37	71	18	117	58	3	2	35	1.30
6601201--6601243	17	2.6	16	85	3	50	60	4	11	23	1.50
6601552--6601613	20	3.0	20	71	13	61	24	25	17	32	1.97
6601890--6601919	14	2.2	14	94	5	53	53	0	0	46	1.00
6604019--6604127	35	3.1	35	74	17	125	55	2	2	38	1.28
6604025--6604135	36	3.1	37	71	18	117	58	3	2	35	1.30
6604289--6604326	17	2.3	16	95	4	67	55	10	7	26	1.61
6611561--6611604	21	2.1	21	83	8	54	68	0	6	25	1.14
6612613--6612656	13	3.2	13	75	12	52	34	13	9	43	1.76
6613434--6613572	56	2.5	56	78	11	167	46	7	10	35	1.67
6613542--6613598	26	2.2	26	100	0	114	59	7	7	26	1.49
6613596--6614156	29	19.7	29	89	2	843	24	0	24	50	1.52
6613596--6614156	57	9.8	57	94	1	860	24	0	24	50	1.52
6613596--6614191	85	7.0	81	86	6	477	24	0	24	50	1.53
6614227--6614275	25	1.9	25	83	4	62	38	16	2	42	1.60
6614386--6614441	24	2.3	24	90	0	85	5	23	28	42	1.76
6615386--6615410	7	3.6	7	100	0	50	60	12	0	28	1.32
6619455--6619517	30	2.1	31	93	3	110	65	0	0	34	0.93
6619511--6619586	40	1.9	40	94	0	134	42	0	25	32	1.55
6619563--6619614	22	2.4	22	93	0	95	42	0	30	26	1.56
6639952--6640155	109	1.9	109	91	0	336	25	6	14	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6642828--6642872	23	2.0	23	86	8	65	53	2	4	40	1.33
6655847--6655910	27	2.4	27	83	0	83	18	23	34	23	1.96
6655847--6655931	27	3.2	26	80	6	82	21	20	34	24	1.97
6655996--6656032	16	2.4	15	86	4	56	54	5	5	35	1.47
6656150--6656271	60	2.0	60	90	0	190	54	12	0	32	1.44
6656293--6656436	61	2.4	61	97	0	270	56	12	0	30	1.36
6656444--6656505	27	2.3	27	82	0	79	20	30	22	25	1.98
6659368--6659398	3	10.3	3	92	0	53	32	0	32	35	1.58
6660326--6660351	3	8.7	3	100	0	52	65	0	34	0	0.93
6667496--6667548	23	2.3	23	90	0	88	52	11	18	16	1.73
6670071--6670120	24	2.0	26	84	7	68	46	14	2	38	1.56
6670971--6671013	10	4.4	10	83	13	54	51	6	0	41	1.29
6679427--6679469	16	2.8	16	82	13	54	39	18	4	37	1.72
6683367--6683407	21	2.0	21	90	0	64	19	29	21	29	1.98
6691073--6691269	46	4.3	46	95	1	353	33	16	22	27	1.95
6693783--6693849	21	3.2	21	68	8	64	32	8	25	32	1.87
6698224--6698613	159	2.6	147	80	11	391	30	7	9	52	1.61
6698309--6698664	159	2.2	157	87	4	475	27	7	8	55	1.58
6698655--6698689	10	3.4	10	84	7	52	8	2	2	85	0.79
6702814--6702853	20	2.0	20	100	0	80	10	45	5	40	1.60
6704464--6704496	17	1.9	17	93	0	57	36	3	9	51	1.49
6704506--6704543	15	2.5	15	86	0	58	44	0	7	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6704475--6704623	60	2.5	61	81	3	185	40	4	8	46	1.52
6704847--6704892	7	6.6	7	78	16	51	60	10	0	28	1.30
6704768--6705031	95	2.8	95	90	1	395	46	15	3	34	1.64
6704847--6704892	15	3.3	15	82	11	62	60	10	0	28	1.30
6704888--6704945	21	2.8	20	80	15	73	43	13	3	39	1.61
6704950--6704986	15	2.7	14	84	15	51	56	13	0	29	1.37
6704950--6704987	7	5.6	7	82	17	53	57	13	0	28	1.36
6704930--6705000	27	2.7	27	70	10	65	49	12	1	36	1.50
6704983--6705034	22	2.4	21	87	3	68	40	19	1	38	1.63
6705105--6705294	9	22.2	9	67	16	100	44	19	1	34	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211