genome.fa.s14.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  171  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50626316--50626417	30	3.4	30	83	4	127	37	14	27	20	1.92
50626112--50626417	90	3.4	89	72	8	264	37	14	23	24	1.92
50636792--50636869	41	1.9	41	86	5	113	16	16	32	34	1.92
50636853--50636992	38	3.7	38	76	3	138	17	25	27	28	1.98
50636853--50636995	77	1.9	77	85	2	198	17	25	27	28	1.98
50640542--50640612	27	2.6	27	90	0	106	42	21	12	23	1.87
50641131--50641206	35	2.1	36	83	7	93	36	21	9	32	1.85
50645280--50645315	13	2.8	13	86	0	54	30	27	0	41	1.56
50661285--50661351	34	2.0	34	87	0	98	35	29	10	23	1.89
50666950--50666979	7	4.4	7	95	4	53	0	13	0	86	0.57
50670067--50670105	5	8.0	5	83	16	55	56	0	0	43	0.99
50677074--50677163	25	3.6	25	74	14	71	34	20	22	23	1.97
50679947--50680095	23	6.5	23	80	0	154	41	20	16	21	1.90
50681834--50681866	16	2.1	16	94	0	57	33	30	9	27	1.88
50684735--50684777	18	2.5	17	81	7	50	27	2	11	58	1.46
50694253--50694289	19	2.0	20	89	10	60	64	5	0	29	1.15
50694263--50694323	30	2.1	28	87	6	86	68	3	0	27	1.05
50694335--50694383	25	2.0	25	87	0	71	59	4	2	34	1.28
50694337--50694392	25	2.4	23	78	16	62	58	3	1	35	1.26
50694394--50694431	18	2.2	17	86	13	51	81	0	2	15	0.80
50698527--50698564	14	2.7	14	95	0	67	28	21	5	44	1.73
50717571--50717599	7	4.1	7	100	0	58	27	0	13	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50719776--50719822	24	1.9	25	86	4	69	61	0	2	36	1.08
50719960--50719993	14	2.4	14	90	5	50	20	2	2	73	1.09
50719960--50720010	15	3.4	14	84	13	57	23	1	1	72	1.05
50719970--50720011	17	2.7	16	89	10	61	23	0	0	76	0.79
50723444--50723525	34	2.4	34	81	4	103	45	1	14	39	1.53
50724507--50724639	70	1.9	67	84	4	176	32	13	12	41	1.82
50740088--50740135	20	2.4	20	82	0	60	27	18	16	37	1.92
50741721--50741758	10	3.7	10	93	6	67	76	7	0	15	1.01
50741721--50741758	11	3.5	11	96	3	69	76	7	0	15	1.01
50742839--50742945	36	2.9	36	88	4	153	56	0	28	14	1.46
50742938--50742995	18	3.2	18	87	0	80	65	5	18	10	1.41
50742959--50743038	29	2.7	29	77	9	90	61	2	25	11	1.42
50748599--50748629	16	1.9	16	93	0	53	70	0	0	29	0.87
50750608--50750653	23	2.0	23	100	0	92	56	26	4	13	1.55
50764968--50765007	6	6.7	6	88	0	62	62	0	0	37	0.95
50771391--50771631	38	6.3	38	85	3	342	17	18	27	36	1.93
50771434--50771536	16	5.7	16	66	27	55	17	20	29	33	1.95
50771412--50771478	22	3.3	21	70	23	63	16	19	28	35	1.93
50771391--50771626	76	3.1	76	92	0	382	16	18	27	36	1.93
50771391--50771631	114	2.1	114	90	3	378	17	18	27	36	1.93
50772544--50772568	13	1.9	13	100	0	50	32	8	24	36	1.84
50774047--50774080	17	2.1	16	88	5	50	0	23	2	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50774720--50774752	3	11.0	3	100	0	66	33	0	0	66	0.92
50778257--50778381	43	2.9	43	79	1	117	30	25	15	28	1.96
50783239--50783289	26	2.0	26	96	0	93	11	23	35	29	1.90
50783161--50783383	103	2.2	104	92	2	369	17	18	31	31	1.95
50783302--50783453	71	2.1	72	92	1	252	23	17	29	30	1.97
50787072--50787141	34	2.1	34	100	0	140	47	8	8	35	1.65
50788964--50789028	9	7.1	9	75	15	53	41	0	1	56	1.08
50788981--50789039	16	3.6	16	76	4	55	42	0	1	55	1.09
50793439--50793607	41	4.2	40	76	13	159	21	17	26	33	1.96
50794377--50794501	15	8.4	15	75	11	87	22	1	44	31	1.62
50794355--50794424	29	2.5	28	81	11	72	22	0	42	34	1.54
50794376--50794501	22	5.6	21	80	10	85	22	1	44	31	1.62
50794384--50794447	29	2.2	30	88	2	94	20	1	45	32	1.61
50794413--50794459	23	2.0	23	100	0	94	21	4	42	31	1.72
50794399--50794495	38	2.6	37	85	8	124	22	2	44	30	1.64
50796239--50796269	7	4.4	7	100	0	62	58	0	16	25	1.38
50796266--50796307	19	2.2	19	100	0	84	59	9	21	9	1.57
50797818--50797858	13	2.8	15	85	14	59	46	19	0	34	1.50
50797905--50797974	28	2.6	28	80	6	74	44	18	1	35	1.59
50797937--50798074	9	16.1	9	70	15	96	47	21	1	30	1.60
50797958--50798102	52	2.8	51	81	8	141	47	19	2	31	1.61
50797782--50798048	16	15.4	16	68	19	119	46	17	1	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50798013--50798057	16	2.5	19	86	10	60	51	20	0	28	1.48
50803643--50803692	21	2.4	21	100	0	100	40	22	34	4	1.72
50804139--50804447	42	7.2	42	83	3	350	25	21	21	32	1.98
50804139--50804436	85	3.5	84	80	2	337	25	20	20	32	1.97
50804139--50804447	127	2.4	129	82	2	383	25	21	21	32	1.98
50814346--50815459	555	2.0	554	99	0	2192	34	12	16	36	1.86
50820773--50820798	12	2.2	12	100	0	52	23	0	0	76	0.78
50830297--50830355	19	3.1	19	85	7	75	79	5	1	13	0.97
50830301--50830355	6	8.7	6	82	11	65	81	3	1	12	0.89
50832513--50832893	128	3.0	128	91	0	618	29	18	24	26	1.98
50832514--50832974	256	1.8	253	81	7	569	30	18	24	26	1.98
50832885--50833563	211	3.2	212	88	3	1045	33	18	20	27	1.96
50832919--50833471	44	12.8	44	73	9	343	31	18	21	28	1.97
50832919--50833574	219	3.0	219	90	2	1040	33	18	20	28	1.96
50833587--50833812	50	4.5	49	74	9	188	34	21	20	23	1.97
50833568--50833813	100	2.5	101	93	1	406	34	21	19	23	1.97
50833820--50833928	50	2.2	50	91	3	175	33	26	17	22	1.96
50834185--50834216	16	1.9	17	93	6	57	50	34	0	15	1.45
50835629--50835690	4	15.5	4	93	0	106	50	20	0	29	1.49
50840520--50840559	20	2.0	20	90	0	62	37	22	27	12	1.90
50841235--50841264	15	2.0	15	100	0	60	26	20	13	40	1.89
50847788--50847888	44	2.3	44	75	1	105	43	12	12	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50862612--50862642	9	3.3	9	95	4	53	58	0	0	41	0.98
50862820--50862872	25	2.1	25	85	0	70	20	15	30	33	1.93
50874718--50874773	25	2.3	25	81	3	69	26	0	7	66	1.18
50874752--50874814	28	2.3	29	78	10	69	30	3	7	58	1.42
50895348--50895386	8	4.8	8	85	14	53	25	10	2	61	1.41
50895340--50895381	18	2.3	19	88	12	70	28	11	4	54	1.57
50897823--50897856	17	1.9	18	88	5	52	50	0	8	41	1.34
50897831--50897878	24	2.0	23	84	4	60	50	2	10	37	1.49
50898177--50898214	10	4.0	10	83	10	53	65	0	2	31	1.06
50898167--50898229	24	2.5	26	75	19	71	66	0	4	28	1.12
50898179--50898225	24	2.0	23	91	8	76	65	0	4	29	1.11
50898776--50898812	17	2.2	16	90	4	56	83	0	8	8	0.80
50904630--50904668	14	2.6	15	92	8	62	46	0	5	48	1.24
50904704--50904802	37	2.8	34	79	15	103	30	24	6	39	1.79
50909521--50909592	29	2.4	27	77	18	72	38	0	11	50	1.38
50909701--50909779	25	3.2	25	83	1	88	21	26	20	31	1.98
50909711--50909798	25	3.6	25	80	4	90	22	23	21	31	1.98
50911700--50911745	23	2.0	23	95	0	83	28	26	8	36	1.86
50915926--50915961	15	2.4	15	100	0	72	44	0	0	55	0.99
50921583--50921630	19	2.5	19	83	13	62	35	0	0	64	0.94
50921724--50921799	28	2.7	28	78	13	75	39	2	2	55	1.28
50921771--50921811	21	2.0	20	85	4	55	31	0	7	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50924429--50924605	93	1.9	93	87	2	257	25	15	22	36	1.94
50927746--50927783	11	3.5	11	82	10	51	63	5	31	0	1.17
50930350--50930447	49	2.0	49	97	0	187	30	21	14	33	1.93
50931186--50931240	17	3.2	17	76	2	56	52	0	1	45	1.11
50933666--50933778	51	2.2	51	93	0	190	29	21	15	34	1.93
50941898--50941932	16	2.2	16	94	0	61	45	11	20	22	1.82
50946584--50946626	23	1.9	22	86	13	61	37	0	23	39	1.55
50947523--50947635	25	4.6	25	82	7	99	24	23	20	31	1.98
50948779--50948818	21	1.9	21	94	0	71	25	5	22	47	1.71
50955052--50955199	49	3.0	49	76	11	165	25	16	22	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211