genome.fa.s14.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  210  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62146105--62146194	17	5.2	16	71	22	67	66	0	33	0	0.92
62146093--62146250	69	2.2	71	83	8	198	67	0	32	0	0.91
62146160--62146218	25	2.5	24	75	17	61	71	0	28	0	0.87
62146615--62147475	285	3.0	285	93	0	1465	51	6	11	30	1.64
62148309--62149258	315	3.0	315	97	0	1774	23	20	24	32	1.98
62153469--62153551	37	2.2	38	84	4	105	49	10	6	33	1.62
62158493--62158538	22	2.1	22	87	0	65	50	19	6	23	1.71
62165933--62166345	210	2.0	206	84	5	546	42	16	12	28	1.85
62167416--62167591	56	3.1	57	83	4	203	42	17	17	22	1.89
62168388--62168435	17	2.8	17	81	12	62	25	0	4	70	1.04
62175825--62175850	4	6.5	4	100	0	52	46	0	0	53	1.00
62178458--62178482	3	8.3	3	100	0	50	68	0	32	0	0.90
62178481--62178510	3	10.0	3	100	0	60	33	0	33	33	1.58
62179306--62179373	31	2.3	30	82	10	77	27	1	1	69	1.06
62187759--62187797	6	6.7	6	91	5	53	7	2	2	87	0.73
62193115--62193190	29	2.6	29	93	0	134	51	9	9	30	1.65
62195222--62195288	29	2.2	30	89	5	100	31	10	11	46	1.75
62195573--62195607	17	2.1	17	88	0	52	22	2	14	60	1.48
62198772--62198814	22	2.0	22	95	0	77	58	6	6	27	1.50
62207801--62207853	27	2.0	26	82	10	63	50	7	5	35	1.54
62208531--62208590	31	1.9	32	83	10	79	45	21	6	26	1.77
62211918--62212352	148	2.9	148	80	5	484	35	20	12	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62225154--62225195	16	2.8	15	78	7	50	47	21	11	19	1.81
62230188--62230507	139	2.3	139	86	5	425	37	21	17	22	1.94
62235212--62235254	4	10.8	4	94	0	77	53	23	0	23	1.46
62240534--62240577	19	2.3	19	88	0	70	36	4	9	50	1.55
62244226--62244455	115	2.0	114	90	2	363	20	8	24	46	1.79
62244094--62244610	270	1.9	270	89	2	797	22	9	23	45	1.81
62244340--62244836	155	3.2	155	92	2	786	23	10	21	44	1.83
62260984--62261016	17	1.9	17	93	0	57	45	6	3	45	1.43
62260925--62261061	61	2.2	60	80	11	152	50	7	5	36	1.54
62264177--62264225	24	2.0	24	88	0	71	22	6	4	67	1.30
62264487--62264515	14	2.0	15	93	6	51	89	0	10	0	0.48
62264486--62264511	11	2.4	11	100	0	52	88	0	11	0	0.52
62274481--62274524	18	2.4	18	100	0	88	52	9	13	25	1.70
62278048--62278133	30	2.9	29	70	5	73	25	13	11	48	1.77
62284618--62284828	116	1.8	118	87	4	320	25	11	17	45	1.81
62286188--62286479	105	2.8	105	87	3	390	33	14	18	33	1.91
62286205--62286479	104	2.6	106	89	4	403	31	14	19	33	1.92
62286871--62286936	20	3.2	20	72	16	64	62	3	0	34	1.11
62287957--62288184	112	2.0	114	89	2	352	37	21	13	26	1.91
62293560--62293589	13	2.3	13	94	0	51	13	6	20	60	1.55
62297943--62297985	20	2.2	19	83	4	50	55	6	2	34	1.39
62297744--62298685	339	2.8	339	98	0	1803	44	9	11	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62300580--62300654	37	2.0	37	94	0	132	18	22	22	36	1.95
62301465--62301512	24	2.0	24	95	0	87	39	20	10	29	1.86
62302626--62302707	41	2.0	41	100	0	164	7	21	29	41	1.80
62307363--62307448	41	2.1	41	100	0	172	38	13	16	31	1.88
62315912--62315952	21	2.0	21	81	18	50	21	26	19	31	1.97
62324818--62324885	21	3.2	21	95	2	118	20	20	38	20	1.94
62328964--62329023	30	2.0	30	90	0	93	26	26	15	31	1.95
62329833--62329864	16	2.0	16	100	0	64	25	12	18	43	1.85
62331443--62331472	14	2.1	14	100	0	60	53	6	6	33	1.53
62346246--62346275	15	2.0	15	100	0	60	66	13	20	0	1.24
62350552--62350691	69	2.0	69	98	0	271	23	22	29	24	1.99
62359201--62359244	22	2.0	22	86	4	63	36	4	2	56	1.32
62360008--62360305	99	3.0	100	82	8	363	25	6	19	49	1.71
62363176--62363200	3	8.3	3	100	0	50	32	0	36	32	1.58
62367835--62367869	18	1.9	18	88	0	52	20	5	20	54	1.64
62368501--62368556	23	2.3	24	84	6	69	58	0	3	37	1.15
62369525--62369573	21	2.3	20	76	10	53	34	2	8	55	1.41
62372007--62372060	22	2.5	22	81	3	65	27	7	9	55	1.58
62373537--62373584	21	2.3	21	85	0	78	37	18	14	29	1.91
62382122--62382165	6	7.5	6	94	2	63	31	15	11	40	1.83
62382656--62382711	28	2.0	27	86	10	78	48	5	0	46	1.25
62384866--62385030	44	3.6	44	83	6	188	30	16	24	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62384917--62385030	50	2.3	51	89	1	176	32	14	25	27	1.95
62387569--62387600	16	2.0	16	93	0	55	78	0	21	0	0.76
62387795--62388117	106	3.0	107	77	8	346	39	14	14	32	1.86
62391045--62391071	13	2.1	13	100	0	54	25	29	14	29	1.95
62400388--62400466	40	2.0	40	84	0	104	22	7	21	48	1.75
62403253--62403280	13	2.2	13	100	0	56	60	14	0	25	1.34
62416850--62417074	111	2.0	110	94	0	396	38	8	15	37	1.79
62417653--62417677	13	1.9	13	100	0	50	20	8	16	56	1.65
62432175--62432223	21	2.4	19	80	10	53	34	4	0	61	1.15
62432486--62432533	23	2.0	24	84	4	62	60	14	16	8	1.57
62433525--62433559	18	1.9	19	88	11	56	54	5	0	40	1.24
62441934--62442138	62	3.2	62	83	8	268	36	20	12	29	1.90
62461045--62461401	193	1.8	193	85	4	497	23	22	18	35	1.95
62461209--62462027	275	3.0	271	84	3	1025	23	26	19	30	1.98
62473830--62473854	7	3.6	7	100	0	50	44	12	0	44	1.41
62490743--62490802	3	20.0	3	83	6	77	31	5	1	61	1.27
62490836--62490884	24	2.1	23	82	14	57	38	8	2	51	1.43
62502319--62502349	1	31.0	1	100	0	62	100	0	0	0	0.00
62503601--62503812	86	2.5	86	84	6	234	31	24	22	22	1.98
62503858--62504145	41	6.7	41	72	13	150	29	20	22	27	1.98
62503991--62504184	44	4.4	44	74	8	171	29	17	23	29	1.97
62503772--62504145	174	2.2	170	88	3	554	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62503856--62504146	87	3.3	87	73	7	293	29	19	23	27	1.98
62503945--62504217	131	2.1	128	87	3	395	28	19	23	28	1.98
62503856--62504145	46	6.6	45	72	12	194	29	20	23	27	1.98
62505615--62505674	3	20.0	3	83	6	77	31	5	1	61	1.27
62505708--62505756	24	2.1	23	82	14	57	38	8	2	51	1.43
62505873--62505912	20	2.0	20	85	0	53	27	0	12	60	1.33
62514746--62514776	15	2.1	15	100	0	62	19	0	19	61	1.35
62532772--62533163	202	2.0	198	87	2	559	37	19	17	25	1.94
62545896--62545934	4	9.8	4	100	0	78	25	23	0	51	1.49
62546448--62546888	102	4.2	102	90	3	623	17	24	21	36	1.95
62546671--62547008	111	3.0	108	82	6	372	20	24	19	35	1.96
62546732--62547080	111	3.1	110	83	3	360	22	24	19	34	1.96
62549387--62549572	11	17.9	11	69	18	114	39	2	0	58	1.13
62549425--62549572	31	4.7	31	76	9	158	41	2	0	56	1.10
62549386--62549535	41	3.7	41	85	7	191	38	2	0	58	1.12
62550889--62550930	22	1.9	22	85	0	57	14	21	14	50	1.78
62551323--62551352	2	15.0	2	100	0	60	50	0	0	50	1.00
62552183--62552217	17	2.1	17	89	5	54	60	0	0	40	0.97
62552760--62552838	37	2.2	37	84	11	101	35	1	5	58	1.28
62553241--62553488	123	2.0	123	92	1	408	35	8	18	37	1.82
62555285--62555322	12	3.5	11	85	10	51	57	18	0	23	1.40
62555300--62555324	6	4.2	6	100	0	50	52	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62564362--62564415	26	2.1	26	89	0	81	29	0	1	68	1.00
62564362--62564422	26	2.4	26	83	5	72	36	0	1	62	1.05
62564595--62564876	143	2.0	143	92	0	465	34	17	18	29	1.94
62565220--62565277	8	7.0	9	78	18	56	31	0	3	65	1.09
62577498--62577523	13	2.0	13	100	0	52	38	15	15	30	1.88
62583286--62583319	2	18.0	2	88	11	54	50	0	0	50	1.00
62592812--62592843	15	2.1	16	88	11	50	18	6	6	68	1.32
62593474--62593549	30	2.5	30	79	12	84	55	3	1	39	1.27
62593539--62593571	16	2.0	17	88	5	50	60	0	0	39	0.97
62597476--62597515	21	2.0	20	85	14	55	55	2	0	42	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211