genome.fa.s14.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  162  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47643754--47644155	47	8.6	47	91	0	579	35	12	27	25	1.92
47652210--47652456	50	4.8	50	82	4	246	22	27	21	28	1.99
47654186--47654231	22	2.0	22	83	4	56	50	10	15	23	1.75
47657959--47657998	17	2.4	17	95	0	71	45	5	15	35	1.68
47659438--47659551	56	2.0	56	96	0	210	40	17	10	31	1.84
47662184--47662222	20	2.0	20	94	0	69	30	30	12	25	1.93
47666997--47667021	13	1.9	13	100	0	50	68	0	0	32	0.90
47675732--47676169	223	2.0	223	93	0	750	33	23	12	30	1.92
47678280--47678323	20	2.3	18	85	14	70	31	0	9	59	1.29
47678403--47678450	16	2.8	18	75	12	55	54	0	0	45	0.99
47678581--47678647	27	2.5	27	92	4	109	23	1	11	62	1.37
47680648--47680827	41	4.4	40	87	2	218	48	8	23	18	1.75
47680648--47680827	81	2.2	81	88	2	254	48	8	23	18	1.75
47696785--47697961	598	2.0	594	91	1	1890	32	11	21	35	1.89
47702117--47702184	35	1.9	35	100	0	136	39	11	2	45	1.56
47703937--47704094	78	2.0	78	96	0	289	41	18	3	35	1.69
47708186--47708228	23	2.0	23	86	9	63	39	0	16	44	1.48
47711317--47711522	107	1.9	108	85	3	281	35	14	13	36	1.85
47713388--47713420	17	1.9	17	100	0	66	48	0	9	42	1.35
47713382--47713428	17	2.6	18	80	13	60	51	0	6	42	1.27
47713385--47713442	19	3.0	21	68	14	52	51	0	5	43	1.24
47724547--47724596	25	2.0	25	88	0	73	28	16	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47740856--47740904	22	2.2	22	100	0	98	38	12	22	26	1.89
47760885--47760934	18	2.5	20	87	9	68	74	2	20	4	1.08
47764738--47764763	13	2.0	13	100	0	52	38	0	23	38	1.55
47771144--47771173	8	3.8	8	95	0	51	66	6	10	16	1.41
47771235--47771262	10	2.8	10	100	0	56	28	0	0	71	0.86
47771274--47772136	158	5.4	159	89	3	1267	28	8	8	55	1.57
47771607--47771668	16	3.8	16	73	12	54	27	6	3	62	1.35
47771274--47772136	476	1.8	474	89	2	1372	28	8	8	55	1.57
47771277--47772125	315	2.7	318	91	2	1325	28	7	8	55	1.57
47773343--47773406	27	2.4	27	86	0	83	9	34	31	25	1.87
47773541--47773575	17	2.1	17	88	0	52	51	5	0	42	1.25
47777792--47777821	15	1.9	16	93	6	53	43	0	6	50	1.28
47777814--47777849	18	2.1	17	90	10	56	38	0	0	61	0.96
47777721--47778006	145	2.0	139	81	11	328	42	1	3	53	1.25
47778095--47778200	44	2.5	41	75	18	117	34	29	3	32	1.75
47778112--47778200	44	2.0	46	91	4	146	37	29	4	29	1.77
47778182--47778234	16	3.3	16	91	0	88	24	33	3	37	1.74
47779716--47779751	18	1.9	18	88	5	54	58	2	0	38	1.13
47780227--47780293	31	2.3	27	76	14	62	40	11	8	38	1.74
47790033--47790080	21	2.3	21	92	0	78	14	29	18	37	1.91
47796236--47796293	29	2.0	29	96	0	107	32	13	25	27	1.94
47799762--47800047	51	5.7	50	76	10	242	23	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47799762--47800047	101	2.8	101	94	1	484	23	16	26	32	1.96
47799969--47800049	26	3.2	26	64	22	62	23	13	27	35	1.92
47800057--47800183	43	3.0	42	76	14	143	23	16	23	36	1.94
47805194--47805222	6	4.8	6	100	0	58	31	17	17	34	1.93
47809215--47809687	44	10.8	44	71	15	264	27	23	20	28	1.99
47809180--47809469	133	2.2	132	90	0	454	25	23	21	29	1.99
47809312--47809777	217	2.1	217	91	0	752	27	23	20	28	1.99
47814905--47814956	27	2.0	26	84	3	68	3	32	9	53	1.51
47823537--47823561	11	2.3	11	100	0	50	0	64	0	36	0.94
47823733--47823759	3	9.0	3	100	0	54	33	0	0	66	0.92
47825437--47825486	25	2.0	25	92	0	82	26	12	6	56	1.58
47835128--47835160	10	3.3	10	95	0	57	36	0	0	63	0.95
47835163--47835226	18	3.4	18	80	18	76	35	0	7	56	1.28
47835127--47835224	20	4.8	20	73	19	85	36	0	6	57	1.24
47835295--47835323	9	3.2	9	100	0	58	31	10	10	48	1.71
47836421--47836485	34	1.9	34	87	0	94	38	16	13	30	1.88
47837640--47837664	3	8.3	3	100	0	50	0	32	0	68	0.90
47848225--47848402	27	6.6	27	85	3	133	29	28	14	26	1.95
47848225--47848401	54	3.3	54	83	5	214	29	28	14	26	1.95
47848246--47848401	81	1.9	82	88	3	235	29	28	14	26	1.95
47849210--47849249	20	2.0	21	85	5	55	35	10	5	50	1.58
47856425--47856463	19	2.0	21	90	10	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47856527--47856586	31	2.0	30	83	9	77	48	11	6	33	1.66
47866002--47866030	9	3.0	10	90	10	51	58	0	0	41	0.98
47866052--47866105	20	2.8	20	82	17	71	42	1	0	55	1.10
47866049--47866100	25	2.1	25	85	7	70	42	1	0	55	1.10
47866081--47866196	61	1.9	58	86	8	162	41	3	5	50	1.42
47866086--47866215	58	2.2	60	77	14	135	43	3	5	46	1.44
47868728--47868919	50	3.7	50	79	3	168	25	21	28	24	1.99
47869170--47869218	20	2.5	20	78	15	57	55	6	26	12	1.60
47870649--47870698	16	3.4	16	76	21	63	14	28	6	52	1.65
47870646--47870691	20	2.3	20	85	14	60	15	28	4	52	1.61
47870649--47870703	28	2.0	28	96	0	101	14	27	5	52	1.63
47870983--47871107	50	2.5	50	79	7	137	20	30	23	25	1.99
47885464--47885512	22	2.1	22	81	7	53	69	2	8	20	1.24
47887049--47887101	12	4.4	13	83	13	53	24	1	1	71	1.06
47888145--47888174	15	1.9	16	93	6	53	46	0	10	43	1.37
47890299--47890575	84	3.3	84	87	1	389	23	14	24	37	1.92
47890300--47890573	41	6.6	41	77	7	266	23	14	24	37	1.92
47897793--47897880	38	2.3	38	79	11	99	35	12	12	39	1.81
47905739--47905840	20	5.1	20	69	4	71	12	33	20	33	1.90
47907635--47907709	37	2.0	37	97	0	141	22	24	25	28	2.00
47908620--47908671	25	2.1	25	100	0	104	19	26	3	50	1.65
47912912--47912941	15	2.0	15	100	0	60	26	40	0	33	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47931233--47931276	24	1.9	22	95	4	70	18	20	13	47	1.82
47931240--47931294	24	2.3	24	84	6	67	21	20	14	43	1.87
47932047--47932101	27	2.0	27	96	0	101	16	30	7	45	1.74
47932547--47932625	25	3.2	23	63	16	59	24	12	20	43	1.86
47932645--47932706	23	2.7	23	80	5	81	17	6	22	53	1.67
47932725--47932813	23	4.0	22	75	15	85	17	6	22	52	1.68
47932645--47932841	107	1.8	107	97	2	378	24	5	24	45	1.75
47943650--47943943	91	3.4	91	85	9	407	46	3	3	46	1.35
47943665--47943816	47	3.3	47	71	15	154	45	2	3	48	1.35
47943773--47943930	78	2.0	78	95	0	280	46	2	2	48	1.29
47944310--47944344	18	2.0	17	88	5	52	45	0	0	54	0.99
47943950--47944358	120	3.4	120	95	1	732	43	3	4	48	1.39
47944501--47944598	45	2.2	45	85	5	128	33	29	6	30	1.82
47945877--47945904	2	14.0	2	100	0	56	50	0	50	0	1.00
47949888--47949912	13	1.9	13	100	0	50	40	0	12	48	1.40
47957942--47957990	26	1.9	26	87	4	73	40	10	28	20	1.85
47969219--47969326	41	2.6	41	79	0	117	33	17	27	21	1.96
47970345--47970377	11	2.8	12	90	9	50	72	0	0	27	0.85
47980427--47980616	95	2.0	95	90	2	301	35	18	18	27	1.94
47981345--47981490	47	3.1	47	92	0	238	30	15	29	23	1.96
47984035--47984074	3	13.3	3	100	0	80	67	0	32	0	0.91
47989331--47989393	19	3.1	21	80	15	71	38	15	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47989340--47989393	19	2.8	19	91	5	83	37	16	9	37	1.81
47989961--47990143	44	4.2	43	69	13	99	24	27	20	27	1.99
47989843--47990229	131	2.9	132	88	2	566	26	26	19	27	1.99
47990197--47990429	89	2.6	89	84	0	304	28	26	21	24	1.99
47990262--47990395	45	3.0	45	70	6	128	26	26	20	26	1.99
47990289--47990427	45	3.1	45	72	6	129	26	27	21	24	1.99
47990524--47990687	44	3.7	44	83	6	181	28	21	20	29	1.98
47990526--47990687	88	1.8	88	84	5	220	27	22	20	29	1.98
47998077--47998133	19	2.7	22	76	15	66	40	17	7	35	1.77
47998067--47998124	22	2.6	22	81	7	64	41	17	5	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211