genome.fa.s14.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  108  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30070895--30070955	17	3.5	17	76	14	54	24	14	18	42	1.88
30087018--30087314	50	5.8	50	80	4	213	28	20	26	23	1.99
30102828--30102933	50	2.1	50	82	3	124	27	21	32	18	1.97
30110630--30110680	21	2.4	21	83	9	59	62	9	3	23	1.42
30110969--30110998	12	2.5	12	94	0	51	40	0	43	16	1.48
30121556--30121676	61	2.0	61	98	0	233	31	13	20	34	1.91
30121556--30121645	30	3.0	29	63	15	74	28	15	22	33	1.95
30123939--30123986	24	2.0	24	83	0	60	47	10	6	35	1.63
30141974--30142052	37	2.1	37	88	4	115	25	30	18	25	1.98
30142171--30142382	47	4.5	47	89	0	316	28	32	8	31	1.87
30142610--30142791	40	4.6	40	83	6	219	25	27	22	24	2.00
30142610--30142791	79	2.3	81	83	7	221	25	27	22	24	2.00
30146485--30146742	40	6.5	40	95	1	430	25	29	21	22	1.99
30148558--30148636	37	2.1	37	88	4	115	25	30	18	25	1.98
30148755--30148969	47	4.6	47	92	0	340	27	31	8	32	1.87
30149193--30149374	40	4.6	40	82	6	219	25	28	21	24	1.99
30149193--30149374	79	2.3	80	83	7	219	25	28	21	24	1.99
30159918--30159956	20	1.9	21	94	5	71	33	2	0	64	1.08
30159918--30159962	20	2.1	21	88	8	65	35	2	0	62	1.08
30160166--30160208	22	2.0	22	86	4	61	51	0	13	34	1.42
30166988--30167532	27	20.2	27	80	5	460	43	18	18	19	1.88
30167960--30168046	28	3.1	27	81	4	95	24	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30174984--30175474	27	18.3	26	83	4	435	43	18	17	20	1.89
30174984--30175458	54	8.9	54	83	4	505	43	18	17	20	1.88
30174984--30175458	81	5.9	81	81	4	541	43	18	17	20	1.88
30179164--30179202	21	1.9	21	89	5	62	35	7	17	38	1.79
30179376--30179435	20	3.0	21	76	18	72	35	11	11	41	1.78
30181193--30181286	40	2.3	40	83	1	116	27	15	26	29	1.96
30181196--30181597	41	9.6	42	77	11	371	21	17	26	34	1.95
30181196--30181552	84	4.3	83	89	3	515	22	16	26	35	1.95
30187123--30187160	20	2.0	20	94	5	69	36	5	2	55	1.37
30194308--30194349	13	3.2	13	86	3	57	45	0	2	52	1.13
30198312--30198443	37	3.6	37	90	2	203	21	22	27	28	1.99
30198312--30198466	74	2.1	74	84	2	195	23	24	24	27	2.00
30206004--30206092	45	2.0	45	93	0	151	32	21	19	26	1.97
30219111--30219550	50	8.6	50	74	6	321	23	27	20	28	1.99
30219153--30219503	100	3.5	100	74	9	359	23	27	20	28	1.99
30219253--30219550	56	5.7	54	72	14	230	25	27	18	28	1.98
30219111--30219551	205	2.2	205	94	0	756	23	27	20	28	1.99
30231630--30231987	44	8.0	44	76	9	296	30	23	17	29	1.97
30231947--30232364	129	3.2	127	82	4	338	27	20	20	31	1.97
30232071--30232364	44	6.8	44	69	13	166	27	21	21	30	1.98
30232013--30232364	128	2.7	129	86	2	467	27	20	21	30	1.98
30232378--30232626	45	5.6	45	81	5	281	23	22	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30232373--30232636	89	3.0	89	87	3	379	22	22	26	28	1.99
30236327--30236363	18	2.1	18	94	0	65	16	0	8	75	1.02
30237551--30237642	27	3.4	27	80	0	112	23	17	26	32	1.97
30241507--30241551	22	2.1	22	88	12	67	57	2	6	33	1.37
30241586--30241625	18	2.3	18	86	4	55	65	0	2	32	1.06
30241587--30241641	17	3.2	16	80	10	56	61	1	3	32	1.24
30242799--30242863	29	2.2	30	83	8	80	50	4	4	40	1.43
30243708--30243764	28	2.0	28	96	0	105	26	15	10	47	1.78
30246040--30246086	24	2.0	24	83	8	60	53	6	6	34	1.52
30247926--30248043	44	2.7	44	97	0	218	26	24	20	28	1.99
30248112--30248240	44	2.9	43	84	2	168	29	24	19	27	1.98
30248381--30248565	84	2.2	85	90	3	293	28	20	20	30	1.98
30248289--30248565	44	6.5	43	67	10	147	28	20	19	31	1.97
30248575--30248980	45	9.1	44	79	7	444	22	23	25	29	1.99
30248575--30248981	89	4.6	89	91	0	643	22	23	25	29	1.99
30249253--30249310	24	2.4	24	91	0	89	29	24	12	34	1.91
30250192--30250246	10	5.0	11	80	14	53	1	16	1	80	0.90
30250208--30250246	16	2.5	17	84	16	57	0	15	2	82	0.79
30255380--30255678	87	3.4	87	72	11	241	26	23	19	30	1.98
30255610--30256247	174	3.7	174	84	4	744	27	21	20	30	1.98
30255431--30255982	218	2.5	215	83	4	520	27	21	20	31	1.98
30255426--30256680	44	28.8	45	70	11	473	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30255958--30256639	218	3.2	218	90	3	1015	27	22	20	29	1.98
30257877--30257924	7	7.0	7	77	13	55	14	16	0	68	1.21
30257877--30257924	21	2.3	21	89	3	80	14	16	0	68	1.21
30258811--30258863	18	2.8	18	78	16	63	7	11	5	75	1.18
30258768--30258888	47	2.6	45	74	17	113	7	12	4	76	1.14
30258805--30258886	17	4.6	17	67	15	51	4	13	4	76	1.11
30262998--30263300	114	2.8	109	87	4	405	33	20	16	30	1.94
30264540--30264575	17	2.1	17	89	0	54	19	22	47	11	1.80
30267196--30267393	48	4.1	48	83	0	225	27	21	28	22	1.99
30267218--30267391	96	1.8	96	86	2	251	27	21	30	21	1.98
30269558--30269628	21	3.4	21	76	7	63	56	21	1	21	1.50
30272834--30272891	21	2.7	21	89	2	80	34	17	10	37	1.84
30272835--30272914	21	3.7	21	80	9	63	35	18	7	38	1.79
30272834--30272905	21	3.4	20	81	11	72	30	19	8	41	1.81
30278496--30278560	32	2.1	32	97	2	123	47	12	9	30	1.72
30281361--30281416	17	3.3	17	97	0	103	30	32	0	37	1.58
30281986--30282024	20	1.9	21	89	5	62	53	17	0	28	1.44
30284219--30284330	27	4.1	27	79	6	102	34	22	11	31	1.90
30284226--30284328	54	1.9	54	85	0	143	36	18	11	33	1.87
30284315--30284367	27	2.0	27	88	7	81	35	18	16	28	1.93
30284756--30284847	28	3.3	28	87	1	123	15	22	23	38	1.92
30292863--30292933	27	2.7	26	89	4	99	25	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30306641--30306673	3	11.0	3	100	0	66	66	0	33	0	0.92
30314518--30314560	19	2.2	20	84	12	63	32	18	0	48	1.48
30316873--30316910	20	1.9	20	94	0	67	23	2	5	68	1.23
30318991--30319068	29	2.7	28	84	11	104	25	15	30	28	1.96
30319021--30319347	173	1.9	174	93	0	566	29	14	24	31	1.94
30327145--30327222	29	2.7	28	84	11	104	25	15	30	28	1.96
30327175--30327500	172	1.9	174	93	1	566	30	14	24	31	1.94
30341876--30341958	27	3.1	28	79	6	73	28	24	16	30	1.97
30347665--30347702	17	2.1	18	85	9	51	50	2	0	47	1.15
30363569--30363612	20	2.1	22	87	8	65	34	31	11	22	1.90
30367336--30367385	18	2.8	18	84	6	57	44	16	6	34	1.72
30383174--30383211	3	12.7	3	100	0	76	31	0	0	68	0.90
30384019--30384074	22	2.5	23	76	2	60	16	7	1	75	1.11
30384829--30384884	25	2.3	25	84	9	71	57	5	16	21	1.59
30388260--30388313	29	1.9	27	85	7	72	51	7	9	31	1.61
30388552--30388604	24	2.3	23	78	15	56	56	3	15	24	1.55
30390091--30390291	44	4.6	44	75	8	180	26	23	21	27	1.99
30390091--30390331	129	1.9	129	84	1	322	27	22	21	29	1.99
30392661--30392695	5	7.0	5	100	0	70	40	0	0	60	0.97
30398747--30398793	24	2.1	23	88	11	71	63	6	4	25	1.36
30398736--30398859	59	2.1	59	100	0	248	61	11	4	22	1.48
30403353--30403538	40	4.7	40	84	6	209	25	25	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30411290--30411513	39	5.7	40	87	5	271	26	26	20	25	1.99
30411290--30411513	79	2.8	79	83	8	276	26	26	20	25	1.99
30418540--30418592	9	6.1	9	76	22	51	45	0	0	54	0.99
30423433--30423544	44	2.5	45	82	4	138	29	19	19	31	1.97
30423584--30423967	50	7.7	50	67	3	234	25	24	21	28	1.99
30423551--30423962	100	4.1	100	88	1	587	25	23	21	28	1.99
30428180--30428226	15	3.4	14	82	11	53	17	12	0	70	1.17
30428758--30428802	13	3.5	12	85	11	54	2	11	6	80	0.99
30428718--30428803	14	6.4	13	74	12	59	4	6	6	81	0.98
30434440--30434866	47	8.7	47	79	15	324	31	8	29	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211