genome.fa.s14.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  136  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40161798--40161842	11	4.4	11	83	8	51	33	26	11	28	1.91
40176131--40176385	102	2.5	103	90	0	413	18	19	29	32	1.95
40183611--40183865	102	2.5	103	91	0	431	18	19	30	32	1.95
40190784--40190871	45	2.0	45	88	4	133	32	22	17	27	1.96
40190873--40191068	51	3.9	51	73	6	200	30	26	17	25	1.97
40190880--40191064	101	1.8	102	85	3	266	31	25	17	25	1.97
40194328--40194402	19	3.8	19	89	6	123	36	10	17	36	1.84
40194328--40194425	19	4.7	22	78	18	88	35	9	17	37	1.82
40194956--40195031	36	2.1	36	80	11	84	38	9	1	51	1.42
40198448--40198491	23	1.9	22	82	17	54	36	25	0	38	1.56
40198539--40198624	45	1.9	45	90	4	138	34	23	12	29	1.92
40198626--40198821	51	3.9	51	78	6	227	30	27	17	24	1.97
40198632--40198817	101	1.9	100	86	5	259	31	26	17	24	1.97
40201433--40201480	18	2.6	18	83	6	60	50	2	4	43	1.33
40202078--40202107	14	2.1	14	93	0	51	16	43	0	40	1.48
40204336--40204364	15	2.0	15	93	6	51	68	0	0	31	0.89
40206995--40207135	70	2.0	70	100	0	282	35	26	7	31	1.83
40226446--40226630	79	2.3	82	83	7	229	24	22	27	25	2.00
40226446--40226630	40	4.7	40	83	6	225	24	22	27	25	2.00
40226499--40226663	79	2.1	79	83	6	201	26	20	27	25	1.99
40242409--40242444	18	2.0	18	100	0	72	33	11	5	50	1.61
40242518--40242638	40	3.0	40	87	4	174	35	17	28	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40246732--40246787	25	2.2	25	80	0	67	30	14	19	35	1.91
40250157--40250263	40	2.7	40	88	2	144	36	18	26	18	1.94
40257577--40257610	14	2.5	14	90	4	52	35	14	0	50	1.44
40258969--40258995	14	1.9	14	100	0	54	29	14	22	33	1.94
40265124--40265151	9	3.1	9	100	0	56	21	10	0	67	1.20
40269753--40269804	21	2.5	21	96	0	95	9	23	11	55	1.64
40269733--40269815	21	3.8	21	83	4	85	14	24	9	51	1.71
40272180--40272273	18	5.4	18	84	3	104	29	9	24	36	1.87
40272195--40272273	27	2.9	27	74	7	88	29	10	25	35	1.88
40272822--40272903	38	2.2	38	100	0	164	23	12	32	31	1.91
40274478--40274524	11	4.5	11	82	12	64	34	2	17	46	1.59
40274479--40274524	20	2.2	21	88	7	76	32	2	17	47	1.60
40279837--40280124	75	3.8	75	86	1	398	21	17	27	34	1.95
40284794--40284855	32	1.9	32	90	0	97	40	20	11	27	1.87
40287462--40305375	617	28.6	617	76	9	14163	27	17	22	32	1.96
40303360--40303451	46	2.0	46	97	0	175	29	21	22	26	1.99
40304835--40305915	540	2.0	540	89	1	1657	27	18	20	33	1.96
40306442--40306954	260	2.0	259	87	3	753	28	19	24	26	1.99
40306703--40310698	617	6.5	614	85	4	4790	27	17	23	31	1.97
40309723--40311686	989	2.0	983	85	3	2665	27	17	22	31	1.97
40310707--40312378	616	2.7	614	90	2	2585	27	17	22	32	1.96
40312379--40316642	617	6.9	618	89	1	5993	27	17	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40316074--40317204	570	2.0	564	84	4	1501	27	17	22	32	1.96
40316771--40318736	990	2.0	984	86	2	2713	27	18	22	31	1.97
40317755--40322015	614	6.9	617	92	1	6951	27	17	22	33	1.96
40321792--40322236	221	2.0	220	93	0	755	26	13	20	40	1.89
40321178--40323695	840	3.0	840	97	0	4751	26	16	21	35	1.94
40322632--40323076	221	2.0	220	93	0	755	26	13	20	40	1.89
40322852--40331255	617	13.6	618	91	1	12898	27	17	22	33	1.96
40331262--40347379	618	26.1	618	87	1	22087	27	17	22	32	1.96
40347688--40351249	619	5.8	618	92	1	5422	27	17	23	31	1.97
40352392--40352480	27	3.3	27	85	4	108	39	15	20	24	1.91
40352416--40352490	27	2.8	27	78	15	77	38	18	17	25	1.92
40352816--40352871	27	2.0	28	93	3	96	25	25	21	28	1.99
40365791--40365890	28	3.5	28	84	4	139	29	23	23	25	1.99
40366239--40366423	27	6.9	27	90	3	266	22	18	16	42	1.89
40369270--40369403	24	5.6	24	80	0	115	26	6	22	44	1.77
40369573--40369680	32	3.4	31	80	8	112	19	22	21	37	1.95
40372057--40372113	20	2.9	19	82	7	78	29	17	28	24	1.97
40374042--40374085	21	2.1	21	83	8	54	25	9	2	63	1.35
40379544--40379686	40	3.7	38	77	5	142	40	19	23	16	1.91
40379551--40379699	78	1.9	79	84	2	201	40	18	22	18	1.91
40387214--40387355	50	2.9	48	84	3	167	26	22	28	21	1.99
40391914--40391996	41	2.0	41	90	0	130	28	30	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40391983--40392074	25	3.7	25	79	0	103	29	20	22	27	1.99
40395078--40395259	28	6.5	28	90	1	267	32	26	12	28	1.92
40405861--40405921	20	3.0	20	80	0	77	19	26	21	32	1.97
40405854--40405962	40	2.7	40	78	4	112	19	23	18	38	1.93
40412161--40412219	21	2.8	21	75	10	57	30	28	28	11	1.92
40412433--40412512	13	5.5	13	74	21	70	23	36	25	15	1.93
40412426--40412538	30	3.8	30	89	1	165	22	38	25	14	1.91
40412426--40412499	13	4.8	17	73	23	74	22	36	27	13	1.92
40415452--40415477	1	26.0	1	100	0	52	100	0	0	0	0.00
40415013--40415596	298	2.0	285	91	5	929	37	14	15	33	1.87
40422633--40422712	41	2.0	41	94	0	142	31	3	15	50	1.61
40430041--40430067	13	2.1	13	100	0	54	33	14	22	29	1.94
40434831--40434868	20	2.0	20	90	10	62	55	10	0	34	1.34
40441370--40441554	91	2.1	88	88	3	271	37	21	11	29	1.88
40442021--40442209	96	2.0	92	85	6	254	37	9	19	33	1.84
40444956--40445003	18	2.8	17	75	12	53	54	2	0	43	1.12
40444937--40445003	34	1.9	36	84	6	93	53	4	1	40	1.30
40446945--40446975	9	3.4	9	90	0	53	25	12	22	38	1.90
40452484--40452568	9	9.4	9	88	0	125	43	23	8	24	1.81
40464238--40464421	101	1.8	101	85	4	264	25	17	25	30	1.97
40477174--40477303	68	1.9	71	85	4	185	42	3	3	51	1.33
40481027--40481258	50	4.7	48	75	11	184	21	27	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40488581--40488804	50	4.5	48	72	13	145	22	27	21	29	1.99
40490728--40491012	138	2.1	138	92	0	471	46	6	8	39	1.59
40493572--40493685	27	4.2	27	71	4	104	16	20	22	40	1.91
40493570--40493728	81	2.0	81	81	7	189	15	21	22	40	1.90
40504354--40504383	14	2.1	14	100	0	60	53	6	26	13	1.64
40506420--40506460	3	13.7	3	100	0	82	34	0	34	31	1.58
40520011--40520140	40	3.3	39	84	5	172	29	26	20	23	1.99
40519974--40520193	79	2.8	80	79	8	193	27	27	20	24	1.99
40520014--40520193	79	2.3	79	83	10	208	27	27	21	23	1.99
40520015--40520193	40	4.5	40	79	10	163	27	27	20	24	1.99
40534660--40534871	40	5.3	39	83	5	264	27	28	20	23	1.99
40534660--40534871	80	2.7	80	91	0	345	27	28	20	23	1.99
40536757--40536808	21	2.5	21	81	12	63	30	7	19	42	1.79
40546868--40546958	44	2.1	44	100	0	182	17	17	14	50	1.78
40565663--40565703	20	2.0	20	100	0	82	14	36	14	34	1.87
40568521--40568551	16	1.9	16	100	0	62	41	6	12	38	1.69
40568557--40568606	16	3.1	16	77	11	57	40	6	12	42	1.67
40568521--40568624	55	1.9	55	91	0	172	39	5	12	42	1.67
40572369--40572397	3	9.7	3	100	0	58	34	0	0	65	0.93
40576378--40576424	24	1.9	25	83	12	62	48	0	4	46	1.21
40579461--40579501	21	1.9	22	85	14	59	31	7	34	26	1.84
40585376--40585429	23	2.6	21	83	13	67	38	7	14	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40587592--40587625	16	2.1	16	94	0	59	20	5	20	52	1.67
40587634--40587773	58	2.4	59	83	8	185	32	1	2	64	1.14
40587640--40587777	39	3.6	37	72	18	104	32	1	2	63	1.15
40587634--40587777	10	14.6	10	74	12	93	32	1	2	63	1.14
40588903--40588934	16	2.0	16	93	0	55	65	12	0	21	1.25
40590374--40590416	20	2.1	20	86	4	59	58	4	0	37	1.19
40590416--40590457	19	2.2	19	100	0	84	54	4	0	40	1.21
40591704--40591769	13	5.5	13	72	20	54	45	18	0	36	1.49
40591702--40591778	23	3.3	23	81	0	100	45	16	0	37	1.48
40596982--40597352	184	2.0	184	100	0	742	45	10	15	29	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211