genome.fa.s14.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  48  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12850071--12850097	6	4.5	6	100	0	54	44	0	0	55	0.99
12852071--12852308	41	5.8	41	80	3	228	18	17	26	36	1.93
12852069--12852306	82	2.9	82	79	2	280	18	17	26	37	1.93
12860267--12860291	13	1.9	13	100	0	50	72	4	0	24	1.02
12860601--12860644	2	22.0	2	100	0	88	0	50	0	50	1.00
12884051--12884100	25	2.0	25	92	0	82	4	36	4	56	1.37
12886979--12887034	21	2.6	22	91	5	89	28	32	8	30	1.88
12899445--12899665	111	2.0	111	91	0	361	33	17	16	32	1.92
12901820--12902035	44	4.9	44	87	2	299	25	24	19	30	1.98
12913870--12914090	111	2.0	111	94	1	390	32	16	17	33	1.93
12915927--12915977	27	1.9	26	88	4	75	17	0	11	70	1.16
12924027--12924063	19	2.0	18	89	5	56	54	0	18	27	1.44
12924060--12924097	5	7.6	5	93	0	67	23	0	39	36	1.55
12931009--12931127	43	2.7	42	78	6	139	28	27	17	26	1.98
12931598--12931684	17	5.1	17	70	13	61	49	12	11	26	1.75
12931604--12931713	34	3.2	34	78	7	114	45	12	11	30	1.78
12932325--12932389	23	2.8	23	84	9	71	1	18	0	80	0.80
12932329--12932423	31	3.0	30	79	13	93	1	20	0	78	0.80
12932345--12932421	16	4.6	17	79	12	88	1	18	0	80	0.78
12932345--12932414	23	3.0	24	80	14	83	1	18	0	80	0.80
12932345--12932424	40	2.0	39	85	2	106	1	17	0	81	0.76
12932325--12932424	23	4.4	23	73	17	66	1	20	0	79	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12932636--12932665	12	2.5	12	94	0	51	0	20	60	20	1.37
12932685--12932727	22	2.0	22	85	0	59	4	11	0	83	0.78
12932700--12932754	10	5.4	10	84	6	67	0	25	0	74	0.82
12932716--12932754	3	12.3	3	89	10	60	0	30	0	69	0.89
12932700--12932754	26	2.0	29	80	13	64	0	25	0	74	0.82
12932817--12932875	20	2.8	21	76	21	61	0	38	0	61	0.96
12932820--12932873	18	2.8	21	81	13	62	0	38	0	61	0.96
12932826--12932875	11	4.4	11	77	7	55	0	36	0	64	0.94
12933078--12933252	29	6.0	30	81	4	196	40	6	22	30	1.79
12933111--12933253	59	2.4	58	89	1	214	39	4	22	33	1.75
12933245--12933282	18	2.1	19	90	5	60	13	0	7	78	0.94
12934224--12934280	28	2.0	28	90	6	89	38	5	0	56	1.22
12935990--12936078	45	2.0	46	80	10	103	33	12	25	28	1.92
12936101--12936158	24	2.4	24	88	0	89	36	10	22	31	1.88
12936699--12937091	44	8.6	44	74	14	262	29	20	22	27	1.98
12936608--12937198	230	2.6	230	91	0	950	30	18	22	28	1.98
12936748--12937087	186	1.8	182	80	6	407	29	20	21	28	1.98
12937593--12937663	32	2.2	32	82	12	83	38	4	4	53	1.40
12938171--12938305	71	1.9	71	92	3	227	29	17	20	32	1.95
12942678--12942793	25	4.6	25	87	0	151	18	27	20	32	1.97
12942686--12942784	50	2.0	50	93	0	171	18	28	19	34	1.95
12947463--12947505	22	1.9	23	86	13	63	9	6	6	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12950839--12951210	43	8.7	43	88	4	477	22	18	28	30	1.97
12954275--12954304	16	1.9	15	93	6	51	30	13	3	53	1.56
12956489--12956630	69	2.1	68	85	1	185	38	6	16	38	1.75
12958388--12958452	22	3.0	22	85	14	91	24	30	0	44	1.54
12958389--12958455	11	6.2	10	85	11	80	25	29	0	44	1.54
12958392--12958464	33	2.2	33	80	9	87	28	27	0	43	1.55
12958394--12958464	22	3.2	22	70	7	56	29	26	0	43	1.55
12958452--12958515	28	2.4	28	84	5	78	39	3	1	56	1.25
12959630--12959668	7	5.6	7	100	0	78	28	0	15	56	1.40
12960588--12960636	21	2.3	21	75	6	55	34	40	18	6	1.75
12960884--12961002	61	2.0	61	84	0	157	29	10	8	52	1.64
12964056--12964474	126	3.3	126	91	0	658	27	20	18	32	1.96
12964513--12964691	97	1.9	95	85	4	252	44	16	2	36	1.60
12964506--12964714	97	2.2	96	80	3	233	44	18	2	33	1.63
12977763--12977795	7	4.7	7	96	0	57	9	57	3	30	1.45
12987091--12987221	45	2.9	45	84	0	172	25	18	14	41	1.88
12988566--12988607	22	1.9	22	85	9	59	21	7	4	66	1.35
12995296--12995329	17	2.1	17	94	5	61	41	0	0	58	0.98
12999193--12999225	16	1.9	17	88	11	50	42	0	30	27	1.56
12999317--12999377	31	1.9	32	83	3	79	42	0	37	19	1.52
12999477--12999506	5	6.0	5	100	0	60	20	0	80	0	0.72
13000706--13000747	19	2.3	19	79	4	50	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13001332--13001383	27	1.9	27	100	0	104	51	9	11	26	1.68
13013730--13013925	10	20.6	9	68	16	67	32	4	3	60	1.31
13014619--13014674	17	3.3	17	75	5	51	60	1	3	33	1.24
13015791--13015849	31	1.9	31	86	6	84	5	27	16	50	1.66
13017579--13017637	23	2.6	22	86	13	84	16	8	22	52	1.70
13018447--13018510	31	2.1	31	96	0	119	32	17	0	50	1.46
13018534--13018622	37	2.4	37	94	0	151	42	13	6	37	1.71
13018837--13018902	33	2.0	33	100	0	132	42	15	6	36	1.71
13020485--13020510	12	2.2	12	100	0	52	23	7	15	53	1.67
13021919--13022126	91	2.3	91	92	0	335	45	3	4	46	1.39
13022041--13022101	28	2.2	28	85	5	81	45	0	3	50	1.17
13021959--13022145	47	4.1	43	71	18	121	45	2	3	48	1.34
13021993--13022145	47	3.3	45	71	18	136	45	2	4	47	1.37
13022180--13022498	66	5.2	64	67	20	250	41	2	6	49	1.44
13022142--13022559	120	3.5	120	94	1	721	41	2	5	49	1.40
13022215--13022522	61	5.1	61	67	19	241	41	1	7	49	1.42
13022387--13022438	15	3.6	15	80	12	56	44	0	1	53	1.11
13022216--13022519	59	5.1	59	65	21	202	41	1	7	49	1.42
13022516--13022557	15	2.7	16	82	14	52	45	0	2	52	1.13
13022507--13022548	15	2.9	15	82	10	52	47	0	0	52	1.00
13024703--13024736	10	3.4	10	83	0	50	70	5	0	23	1.09
13024722--13024796	29	2.6	28	85	8	105	54	6	5	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13025042--13025080	18	2.1	19	85	4	53	61	2	0	35	1.10
13025251--13025485	19	11.9	19	65	21	69	27	3	5	63	1.33
13025251--13025314	29	2.2	29	78	10	69	28	0	7	64	1.21
13025379--13025485	10	10.9	10	70	15	71	27	2	3	66	1.22
13030869--13030902	17	1.9	18	88	5	52	50	8	5	35	1.58
13031931--13031999	24	2.9	24	73	0	66	20	21	18	39	1.93
13031959--13031998	18	2.2	18	86	0	53	20	25	15	40	1.90
13032025--13032080	24	2.3	24	81	0	67	37	8	16	37	1.80
13034541--13034565	12	2.1	12	100	0	50	0	16	0	84	0.63
13035114--13035191	41	1.9	41	91	0	129	16	15	34	33	1.90
13035172--13035227	29	1.9	29	85	0	76	14	21	35	28	1.92
13053458--13053535	40	2.0	40	82	10	97	52	2	0	44	1.14
13057814--13057867	25	2.2	25	80	12	58	18	1	18	61	1.44
13057820--13057883	27	2.5	24	80	17	67	18	1	17	62	1.41
13058517--13058631	44	2.6	44	80	14	139	24	20	27	26	1.99
13060141--13060285	23	6.2	23	78	7	132	28	12	16	42	1.84
13060124--13060261	47	3.0	46	86	3	195	28	13	16	41	1.87
13061350--13061398	24	2.0	25	88	4	73	36	2	10	51	1.48
13065552--13065609	27	2.1	27	81	12	66	46	15	18	18	1.84
13076390--13076456	15	4.5	15	76	14	66	26	7	4	61	1.42
13077684--13077752	30	2.2	31	87	5	95	33	31	0	34	1.58
13102866--13102951	42	2.0	42	100	0	172	53	9	2	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13104871--13104927	26	2.1	27	81	15	66	29	0	0	70	0.88
13104827--13104929	50	2.1	50	82	10	126	33	1	0	63	1.12
13109585--13109641	22	2.6	22	82	0	78	35	17	1	45	1.59
13109575--13109656	15	5.5	15	70	13	62	34	17	2	46	1.61
13113071--13113522	244	1.8	248	81	9	575	31	9	7	51	1.62
13119266--13119314	4	12.8	4	80	20	52	18	0	4	77	0.92
13119265--13119310	22	2.0	22	88	12	67	17	0	4	78	0.91
13119265--13119314	19	2.6	19	87	9	75	18	0	4	78	0.91
13119267--13119339	35	2.1	36	87	12	107	17	2	6	72	1.19
13119276--13119339	18	3.6	17	81	14	76	17	3	7	71	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211