genome.fa.s14.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  140  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41556862--41557230	88	4.3	88	90	6	605	46	20	0	32	1.57
41557125--41557156	16	2.0	16	93	0	55	53	18	0	28	1.45
41556862--41557230	166	2.2	172	91	4	597	46	20	0	32	1.57
41562699--41562769	21	3.4	21	80	7	81	33	16	43	5	1.72
41563082--41563327	84	2.9	84	85	4	318	31	19	21	28	1.97
41563084--41563285	42	4.9	41	82	5	262	32	20	20	26	1.97
41563084--41563327	126	1.9	125	81	2	292	31	19	21	28	1.97
41570557--41571314	390	1.9	391	84	2	1022	21	25	19	34	1.97
41577974--41578011	18	2.1	19	85	5	51	68	7	13	10	1.39
41582179--41582227	25	1.9	26	91	4	82	63	10	12	14	1.53
41584293--41584346	13	4.1	13	76	4	63	37	24	7	31	1.83
41584293--41584344	27	2.0	26	84	3	68	36	23	7	32	1.83
41595081--41595177	27	3.3	27	79	18	113	29	31	23	14	1.94
41595043--41595175	61	2.2	60	86	7	182	31	30	23	14	1.94
41595199--41595354	33	4.6	33	70	23	126	33	29	20	16	1.95
41595095--41595357	103	2.5	103	95	0	463	32	29	20	17	1.96
41595691--41595748	30	1.9	30	82	0	71	32	22	6	37	1.81
41599351--41599393	22	2.0	22	86	9	61	30	2	16	51	1.57
41617037--41617078	18	2.4	17	88	4	57	54	9	0	35	1.33
41621380--41621632	39	6.5	39	87	1	364	29	4	20	45	1.70
41638775--41638863	45	1.9	47	84	4	119	38	16	22	22	1.93
41640973--41641151	56	3.2	55	84	2	205	30	11	24	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41640984--41641073	28	3.2	29	69	13	89	28	12	25	33	1.92
41642759--41642814	23	2.4	23	75	0	58	48	8	14	28	1.74
41643292--41643325	17	2.0	17	94	0	59	23	14	11	50	1.76
41648950--41648993	9	4.9	9	82	0	61	47	18	6	27	1.73
41661438--41661586	41	3.6	41	83	3	183	44	16	12	25	1.83
41661435--41661622	82	2.3	81	79	7	191	44	17	14	24	1.85
41661437--41661622	41	4.5	40	79	4	113	44	17	13	24	1.85
41673551--41674172	309	2.0	309	98	0	1190	31	20	17	30	1.96
41679585--41679849	30	8.9	30	92	1	428	30	10	19	39	1.86
41686857--41686904	10	4.5	10	78	21	53	75	4	20	0	0.97
41686857--41686907	22	2.4	21	83	9	59	76	3	19	0	0.94
41698167--41698857	138	5.1	138	85	4	924	40	7	5	45	1.57
41705530--41705713	40	4.6	39	77	8	165	27	27	21	23	1.99
41705493--41705713	80	2.8	80	78	7	193	26	27	21	24	1.99
41705533--41705713	80	2.3	80	83	9	210	27	27	21	23	1.99
41708480--41709016	138	3.9	138	87	0	734	40	9	6	44	1.62
41717311--41717341	10	3.1	10	95	0	53	54	0	0	45	0.99
41717295--41717339	15	3.0	15	83	6	56	46	0	0	53	1.00
41717714--41717774	31	1.9	33	86	6	90	52	4	16	26	1.64
41720853--41720893	21	2.0	21	85	9	57	19	0	7	73	1.07
41730515--41730742	29	7.8	29	75	9	144	23	26	11	38	1.89
41730505--41730739	59	4.0	57	74	9	172	22	26	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41730524--41730761	117	2.0	116	87	4	336	23	25	12	39	1.89
41751107--41751144	17	2.1	18	85	14	51	5	15	0	78	0.91
41753264--41753348	43	2.0	43	100	0	170	16	24	32	25	1.96
41760474--41760606	66	2.0	66	100	0	266	46	22	13	17	1.83
41766003--41766077	30	2.3	34	80	17	97	45	2	13	38	1.57
41766127--41766236	58	1.9	57	80	9	125	43	5	4	46	1.47
41766771--41766810	21	1.9	21	84	0	53	45	2	7	45	1.45
41766792--41766829	15	2.4	17	86	8	53	57	5	0	36	1.21
41768167--41768206	16	2.6	15	84	7	53	55	0	0	45	0.99
41780268--41780296	5	6.0	5	92	8	51	41	0	58	0	0.98
41784683--41784759	9	8.6	9	80	0	73	37	27	10	24	1.88
41784683--41784759	18	4.3	18	81	0	91	37	27	10	24	1.88
41784683--41784759	27	2.9	27	82	0	91	37	27	10	24	1.88
41789456--41789519	24	2.7	24	75	18	69	35	0	1	62	1.05
41791648--41791693	16	2.8	16	78	15	58	43	0	2	54	1.12
41792376--41792418	23	1.9	22	85	4	59	32	0	0	67	0.91
41803966--41804025	26	2.3	27	85	8	88	36	18	6	38	1.77
41806952--41807002	24	2.1	26	85	10	72	54	7	5	31	1.53
41809189--41809254	33	2.0	33	100	0	132	54	6	6	33	1.50
41811700--41811761	18	3.5	17	80	12	63	29	0	4	66	1.12
41811714--41811761	17	2.7	17	87	6	60	29	0	4	66	1.10
41819289--41819328	7	5.7	7	93	0	71	30	25	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41819289--41819341	14	3.9	14	82	9	65	33	20	0	45	1.52
41819693--41819756	31	2.1	32	85	5	87	53	0	1	45	1.10
41819734--41819778	22	2.0	22	87	8	65	60	2	0	37	1.09
41826672--41826770	21	4.7	21	84	13	132	38	16	9	36	1.80
41826672--41826770	40	2.3	43	86	10	134	38	16	9	36	1.80
41827144--41827560	44	9.5	43	78	8	362	28	24	16	29	1.97
41827189--41827486	89	3.4	89	88	5	421	29	25	15	30	1.95
41827114--41827483	131	2.8	133	88	4	518	28	25	15	31	1.95
41827423--41828474	88	12.0	88	90	0	1478	25	26	22	26	2.00
41827457--41828454	527	1.9	527	89	0	1546	24	26	22	26	2.00
41835327--41835398	19	3.7	19	89	10	110	37	15	11	36	1.83
41837225--41837299	13	5.8	13	87	0	105	25	6	25	42	1.79
41842326--41842366	19	2.2	19	86	4	57	58	4	0	36	1.20
41842325--41842377	19	2.7	20	77	14	56	60	5	0	33	1.20
41842389--41842448	10	6.0	10	77	14	70	68	1	3	26	1.15
41842390--41842451	19	3.2	18	82	13	70	70	1	3	24	1.10
41842919--41842968	17	2.8	18	84	9	66	68	6	0	26	1.13
41842965--41843038	22	3.4	22	71	15	64	62	1	2	33	1.18
41842937--41843084	10	14.4	10	66	14	52	60	2	1	35	1.16
41843109--41843179	35	2.0	35	97	0	133	45	11	5	38	1.64
41848713--41848891	33	5.4	32	70	13	101	27	26	16	29	1.97
41848711--41848926	101	2.1	101	89	1	326	27	26	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41857267--41858509	47	26.2	47	95	1	2171	32	8	28	29	1.87
41857267--41858509	143	8.7	141	95	1	2171	32	8	28	29	1.87
41858628--41858706	37	2.1	37	90	0	122	24	18	31	25	1.98
41861189--41861300	32	3.7	31	70	20	94	45	24	12	17	1.83
41861184--41861299	59	1.9	60	86	6	164	43	24	12	19	1.85
41861203--41861316	59	1.9	59	84	7	151	47	22	10	19	1.80
41862128--41862476	177	2.0	180	92	3	589	36	27	8	28	1.85
41881186--41881212	14	1.9	14	100	0	54	37	22	25	14	1.93
41884437--41884529	47	2.0	47	95	0	168	30	13	23	32	1.94
41884915--41884980	31	2.1	31	97	0	123	36	30	7	25	1.84
41890129--41890204	20	3.8	20	78	13	93	50	0	27	22	1.50
41893978--41894056	30	2.6	30	79	0	95	39	29	15	16	1.89
41894216--41894367	61	2.5	61	81	2	162	40	19	13	26	1.88
41894541--41894647	54	2.0	54	85	3	144	23	25	16	34	1.95
41900363--41900431	28	2.5	27	85	2	84	34	7	8	49	1.61
41910501--41910560	27	2.2	27	78	0	66	23	25	11	40	1.88
41922581--41922607	7	3.9	7	100	0	54	74	0	11	14	1.08
41923195--41923235	20	2.0	20	95	0	73	58	19	4	17	1.56
41936123--41936172	25	2.0	26	84	4	66	40	4	10	46	1.56
41942978--41943008	16	1.9	16	93	0	53	77	0	16	6	0.97
41948194--41948254	27	2.3	27	88	0	86	21	39	21	18	1.93
41953676--41953715	11	3.6	11	100	0	80	32	0	30	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41964347--41964616	47	5.7	48	90	5	383	26	30	9	33	1.88
41966384--41966503	56	2.1	56	98	0	231	22	23	9	45	1.81
41967780--41968083	80	3.8	80	90	1	441	25	27	22	24	1.99
41967780--41968041	40	6.6	40	93	0	416	25	28	22	23	1.99
41967780--41968083	120	2.5	120	85	3	425	25	27	22	24	1.99
41967780--41968083	40	7.6	39	89	2	385	25	27	22	24	1.99
41970381--41970650	47	5.7	47	92	2	384	26	30	9	34	1.88
41972288--41972407	56	2.1	56	100	0	240	22	24	9	44	1.82
41974183--41974255	33	2.2	33	87	0	110	41	15	39	4	1.66
41981668--41982058	50	7.7	50	81	2	356	22	27	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211