genome.fa.s14.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  158  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46756888--46757028	64	2.1	66	87	8	207	62	7	5	24	1.44
46756967--46757017	16	3.3	16	71	20	54	54	11	7	25	1.63
46757219--46757283	27	2.4	27	89	0	94	7	35	30	26	1.84
46757334--46757381	11	4.6	10	80	15	53	16	0	10	72	1.10
46778508--46778746	50	4.7	50	79	7	180	28	18	28	24	1.98
46778947--46778996	20	2.5	20	81	15	68	56	8	24	12	1.62
46784443--46784691	50	4.8	50	85	4	284	20	29	24	26	1.99
46784442--46784691	100	2.4	104	88	6	357	20	29	24	26	1.99
46784786--46784817	13	2.5	13	94	0	55	56	12	0	31	1.37
46785029--46785086	30	1.9	30	89	0	89	31	24	3	41	1.71
46792033--46792281	50	4.8	50	85	4	284	20	29	24	26	1.99
46792032--46792281	100	2.4	104	88	6	357	20	29	24	26	1.99
46792376--46792407	13	2.5	13	94	0	55	56	12	0	31	1.37
46792619--46792676	30	1.9	30	89	0	89	31	24	3	41	1.71
46799991--46800065	39	1.9	39	97	0	141	32	24	21	22	1.98
46805478--46805506	13	2.2	13	100	0	58	24	17	27	31	1.97
46806030--46806078	16	3.1	16	77	16	57	26	22	36	14	1.92
46806039--46806084	16	2.9	15	81	15	56	26	23	36	13	1.91
46807224--46807280	29	1.9	29	82	3	69	38	3	8	49	1.51
46807969--46808011	14	3.1	15	83	12	56	67	0	0	32	0.91
46811162--46811361	99	2.0	99	97	0	373	39	13	15	32	1.86
46812375--46812409	18	2.0	18	88	5	54	25	2	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46813695--46813731	2	18.5	2	94	0	65	48	0	48	2	1.15
46815514--46815554	8	5.9	7	91	8	50	58	0	41	0	0.98
46815514--46815554	15	2.9	14	83	16	50	58	0	41	0	0.98
46815720--46815759	6	6.5	6	94	5	71	0	15	0	85	0.61
46815720--46815759	19	2.2	19	95	4	73	0	15	0	85	0.61
46817930--46818099	38	4.5	38	89	2	245	29	19	17	34	1.94
46817930--46818099	76	2.2	76	91	2	270	29	19	17	34	1.94
46824789--46824847	13	4.5	13	81	8	50	25	5	30	38	1.77
46827037--46827189	5	29.0	5	76	10	135	35	20	2	41	1.66
46827123--46827184	22	2.9	22	83	4	83	35	22	0	41	1.54
46831004--46831293	44	6.7	45	78	10	248	27	25	17	28	1.98
46831004--46831293	88	3.4	85	77	5	284	27	25	17	28	1.98
46831178--46831293	38	2.9	38	82	7	106	26	24	17	31	1.97
46831004--46831295	126	2.3	128	87	4	410	28	25	17	28	1.98
46831283--46831793	88	5.8	88	88	0	725	24	26	23	25	2.00
46833038--46833073	16	2.2	16	95	0	63	0	13	0	86	0.58
46842397--46842439	6	7.5	6	94	5	72	16	0	16	67	1.24
46849115--46849265	59	2.6	56	86	9	196	40	12	13	33	1.83
46849061--46849267	58	3.6	57	80	9	229	39	13	15	31	1.86
46856194--46856223	16	1.9	15	93	6	51	23	10	33	33	1.88
46859166--46859199	16	2.1	16	100	0	68	11	26	23	38	1.89
46860518--46860556	20	1.9	21	84	5	53	61	7	10	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46863890--46864544	154	4.4	151	85	7	852	30	10	7	52	1.62
46863890--46864544	295	2.2	302	86	6	913	30	10	7	52	1.62
46864543--46864896	149	2.4	148	88	3	507	52	7	7	31	1.58
46865314--46865381	11	6.4	11	71	23	56	60	0	2	36	1.12
46865324--46865357	17	2.0	17	88	0	50	64	0	0	35	0.94
46865287--46865432	41	3.5	41	91	3	222	62	0	2	34	1.10
46873651--46873689	15	2.6	15	80	15	53	58	7	7	25	1.52
46875668--46875894	44	5.1	44	71	16	157	27	23	19	29	1.98
46875683--46876282	89	6.9	88	70	15	275	29	23	18	28	1.98
46875729--46876363	44	14.6	44	68	17	242	29	23	18	28	1.98
46875735--46876195	217	2.1	217	96	0	841	29	23	18	28	1.98
46875857--46876368	173	3.0	171	87	4	521	29	23	18	28	1.98
46876082--46876353	84	3.2	83	74	12	307	29	23	18	27	1.98
46875735--46876501	217	3.5	217	85	6	813	29	22	18	28	1.98
46875955--46876457	173	2.9	172	86	7	662	29	22	18	29	1.97
46875768--46876586	390	2.1	390	91	1	1302	29	22	18	29	1.97
46876171--46876587	217	1.9	218	89	1	640	30	21	18	29	1.97
46888442--46888480	15	2.6	15	80	15	53	58	7	7	25	1.52
46892277--46892322	16	2.9	16	84	9	60	54	0	4	41	1.20
46893988--46894049	24	2.6	24	86	0	79	35	3	29	32	1.73
46894932--46895052	42	2.9	42	93	0	215	21	22	21	34	1.97
46900975--46901180	9	24.2	9	69	15	109	33	1	19	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46900968--46901030	32	2.0	32	90	6	101	30	3	19	47	1.64
46901251--46901302	22	2.4	21	87	3	68	38	1	19	40	1.63
46901298--46901335	7	5.6	7	82	17	53	28	0	13	57	1.36
46901283--46901355	27	2.7	26	70	6	74	36	1	13	47	1.52
46901347--46901432	21	4.0	22	72	19	67	34	2	13	48	1.56
46901340--46901483	50	3.2	42	69	21	119	35	3	13	47	1.61
46901393--46901438	7	6.6	7	78	16	51	28	0	10	60	1.30
46901251--46901517	95	2.8	95	90	1	401	35	3	14	46	1.63
46901393--46901438	15	3.3	15	79	17	62	28	0	10	60	1.30
46901610--46901676	20	3.2	20	74	16	55	58	2	1	37	1.23
46901663--46901810	61	2.4	61	80	4	174	46	8	4	41	1.52
46901741--46901780	16	2.6	15	76	7	53	47	7	0	45	1.31
46901789--46901821	17	1.9	17	93	0	57	51	9	3	36	1.49
46903463--46903502	20	2.0	20	100	0	80	40	5	45	10	1.60
46906450--46906707	113	2.3	112	82	6	315	26	21	17	34	1.96
46919496--46919534	16	2.4	17	83	12	55	38	0	0	61	0.96
46927529--46927582	28	1.9	28	85	14	76	29	20	16	33	1.95
46927553--46927739	106	1.8	101	83	8	250	28	24	14	31	1.95
46928795--46928896	53	1.9	53	91	0	168	33	16	10	39	1.84
46935869--46935913	19	2.3	20	81	14	58	40	2	6	51	1.41
46936891--46937051	43	3.7	43	90	0	232	23	27	19	29	1.98
46943227--46943261	7	5.1	7	86	6	54	42	42	2	11	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46943229--46943253	13	1.9	13	100	0	50	48	44	0	8	1.32
46943961--46944337	114	3.3	112	86	4	486	27	26	20	25	1.99
46943960--46944340	115	3.3	114	86	3	514	27	26	20	25	1.99
46944237--46944409	73	2.4	72	91	0	274	26	26	21	26	2.00
46944123--46944569	186	2.4	186	88	0	660	27	25	20	26	1.99
46944426--46944681	85	3.3	73	79	13	298	25	25	21	27	2.00
46944582--46944793	113	1.9	113	93	0	370	24	27	23	24	2.00
46951630--46951667	3	12.7	3	94	0	67	36	0	63	0	0.95
46952963--46953045	27	2.9	28	72	13	78	50	2	6	40	1.40
46953004--46953043	21	1.9	21	85	10	55	47	0	7	45	1.31
46952971--46953090	19	6.2	20	71	13	65	50	2	5	41	1.37
46953031--46953093	19	3.2	20	80	8	67	53	1	3	41	1.26
46953045--46953144	10	10.2	9	70	20	51	56	3	5	36	1.37
46953818--46953851	16	2.1	16	88	0	50	32	2	0	64	1.08
46955548--46955581	14	2.3	15	90	5	52	41	0	17	41	1.50
46961863--46961915	26	2.0	26	85	0	70	45	11	16	26	1.82
46962164--46962223	23	2.5	23	86	5	75	41	0	3	55	1.16
46962202--46962263	18	3.2	20	75	20	62	38	0	3	58	1.15
46964401--46964493	27	3.5	27	76	7	91	30	15	32	22	1.94
46964402--46964592	54	3.5	54	76	6	170	31	13	30	24	1.94
46964423--46964592	27	6.3	27	78	4	137	32	14	29	23	1.94
46973565--46973602	15	2.5	15	91	0	58	76	0	23	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46974289--46974345	26	2.1	27	80	3	62	38	7	1	52	1.39
46974626--46974659	15	2.1	17	89	10	54	29	5	0	64	1.17
46979933--46979994	19	3.1	20	80	13	65	56	1	3	38	1.25
46979893--46980037	68	2.1	69	81	6	161	54	4	2	39	1.31
46985773--46985804	14	2.3	14	94	0	55	50	15	6	28	1.68
46988536--46988561	6	4.3	6	100	0	52	80	0	0	19	0.71
46990488--46990532	23	1.9	24	86	4	65	35	0	4	60	1.17
47003190--47003450	40	6.6	40	85	5	325	41	29	16	13	1.85
47003190--47003443	120	2.1	118	87	5	377	41	29	16	13	1.86
47009950--47010085	41	3.3	41	92	0	209	31	17	18	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211