genome.fa.s14.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  182  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53976569--53976621	22	2.4	22	80	0	61	18	28	1	50	1.57
53976526--53976618	11	8.5	11	69	15	50	20	30	1	48	1.57
53976639--53976698	26	2.4	24	83	8	66	26	5	5	63	1.36
53977269--53977304	15	2.3	16	90	4	56	25	0	2	72	0.98
53982852--53982884	3	11.0	3	100	0	66	66	0	0	33	0.92
53991537--53991784	99	2.4	104	86	8	339	20	28	24	26	1.99
53991538--53991784	50	4.8	50	84	6	284	20	28	24	26	1.99
53991878--53991909	13	2.5	13	94	0	55	56	12	0	31	1.37
53992120--53992177	30	1.9	30	89	0	89	31	24	3	41	1.71
53999121--53999369	50	4.8	50	85	4	284	20	29	24	26	1.99
53999120--53999369	100	2.4	104	88	6	357	20	29	24	26	1.99
53999464--53999495	13	2.5	13	94	0	55	56	12	0	31	1.37
53999707--53999764	30	1.9	30	89	0	89	31	24	3	41	1.71
54002543--54002593	24	2.1	25	85	3	68	17	27	21	33	1.96
54002554--54002606	24	2.2	24	82	0	61	18	26	22	32	1.97
54006362--54006401	5	8.0	5	94	0	62	57	37	0	5	1.21
54013594--54013654	6	10.0	6	85	3	77	47	49	1	1	1.21
54013805--54013859	24	2.3	24	78	15	60	45	10	38	5	1.63
54029543--54029591	23	2.0	25	84	7	66	46	0	8	44	1.33
54036589--54036715	33	3.8	33	77	7	96	31	15	25	26	1.96
54036591--54036784	105	1.9	101	84	4	262	31	14	24	28	1.95
54036591--54036807	105	2.1	101	82	5	256	33	15	23	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54036729--54036805	33	2.3	32	82	6	91	36	16	20	25	1.94
54038084--54038129	20	2.3	20	84	0	56	30	10	10	47	1.73
54038096--54038133	20	1.9	20	94	0	67	28	5	13	52	1.61
54039246--54039276	10	3.1	10	90	0	53	77	0	22	0	0.77
54040149--54040283	40	3.4	40	79	7	159	26	19	23	30	1.98
54041617--54041651	17	2.1	17	94	0	61	14	28	14	42	1.84
54043316--54043345	15	2.0	15	93	0	51	66	16	0	16	1.25
54046069--54046093	2	12.5	2	100	0	50	48	0	0	52	1.00
54057937--54057965	14	2.0	15	93	6	51	24	0	0	75	0.80
54067551--54067721	43	4.0	43	80	8	206	31	27	17	23	1.97
54067551--54067705	84	1.8	84	86	5	224	29	28	18	23	1.98
54072334--54072371	20	1.9	20	94	0	67	23	7	15	52	1.69
54075489--54075549	26	2.3	27	83	10	74	26	13	6	54	1.63
54083669--54083708	4	10.0	4	94	0	71	25	2	25	47	1.64
54089971--54090208	44	5.5	44	69	14	129	27	21	21	29	1.98
54089898--54090164	128	2.1	129	80	5	308	27	20	21	30	1.98
54090261--54090706	44	10.1	44	63	12	155	27	23	19	30	1.98
54090261--54090762	132	3.8	132	94	0	871	27	23	19	30	1.98
54090542--54090735	43	4.4	43	64	15	110	25	24	18	31	1.97
54091853--54091922	13	4.8	13	74	16	50	14	17	0	68	1.21
54091859--54091922	7	8.7	7	76	20	60	14	17	0	68	1.21
54092818--54092858	20	2.1	19	86	13	57	68	4	12	14	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54094823--54094847	13	1.9	13	100	0	50	48	12	8	32	1.69
54096177--54096223	10	4.8	10	82	12	62	10	0	8	80	0.89
54096175--54096236	18	3.6	18	80	6	76	11	0	6	82	0.84
54096190--54096236	11	4.3	11	84	7	60	10	0	6	82	0.82
54096838--54096893	3	18.3	3	75	10	51	25	3	0	71	1.02
54096834--54096893	25	2.4	25	88	2	86	25	3	0	71	1.01
54096847--54096893	12	3.8	12	83	5	58	23	2	0	74	0.93
54097137--54097179	18	2.4	17	81	11	50	34	2	0	62	1.08
54109104--54110035	44	21.2	44	64	10	294	29	19	25	25	1.99
54109103--54110009	395	2.3	396	92	0	1510	29	19	25	25	1.99
54109103--54110009	132	6.9	132	93	0	1465	29	19	25	25	1.99
54109896--54110083	88	2.1	88	93	0	322	30	21	21	26	1.98
54109940--54110079	44	3.2	43	66	18	117	30	20	21	27	1.98
54110068--54110234	44	3.8	44	70	15	130	30	17	24	26	1.97
54111107--54111139	12	2.6	13	90	4	50	75	0	0	24	0.80
54112512--54112568	29	2.0	29	82	6	71	12	24	1	61	1.40
54112530--54112567	17	2.2	18	85	4	51	10	23	2	63	1.39
54114867--54114899	12	2.6	13	90	4	50	75	0	0	24	0.80
54115713--54115750	6	6.7	6	85	8	53	13	0	2	84	0.73
54116347--54116399	3	17.3	3	77	11	54	26	3	0	69	1.05
54116343--54116399	28	2.0	28	89	0	87	26	3	0	70	1.03
54116343--54116399	13	4.3	13	77	18	55	26	3	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54126814--54126861	23	2.0	23	84	4	60	79	0	12	8	0.94
54126801--54126859	22	2.6	23	76	10	59	79	0	11	8	0.93
54127874--54127917	22	2.0	22	95	0	79	36	15	13	34	1.87
54145583--54145845	133	2.0	132	89	0	400	24	20	16	38	1.92
54148712--54148758	19	2.4	20	85	3	60	42	2	8	46	1.46
54152453--54152556	51	2.1	50	92	1	172	39	2	21	36	1.68
54156587--54156870	90	3.2	90	79	5	313	26	8	13	52	1.68
54156918--54156946	15	1.9	15	100	0	58	24	6	0	68	1.13
54159581--54159670	30	3.3	30	66	24	81	33	7	2	56	1.40
54159631--54159882	64	3.9	64	86	7	350	30	7	1	59	1.37
54159632--54159881	127	2.0	128	88	4	380	31	8	2	58	1.38
54159861--54159909	25	2.0	25	87	0	71	24	6	2	67	1.24
54162486--54162521	14	2.6	14	86	13	56	66	0	2	30	1.06
54168622--54168659	17	2.2	18	90	4	60	44	0	0	55	0.99
54179538--54179607	30	2.4	30	81	9	81	64	7	1	27	1.28
54202730--54202786	4	14.2	4	100	0	114	50	24	0	24	1.49
54202784--54202812	2	14.5	2	100	0	58	51	48	0	0	1.00
54204016--54204055	16	2.4	17	83	4	55	47	2	0	50	1.14
54206993--54207241	50	4.8	50	85	4	284	20	29	24	26	1.99
54206992--54207241	100	2.4	104	88	6	357	20	29	24	26	1.99
54207336--54207367	13	2.5	13	94	0	55	56	12	0	31	1.37
54207579--54207636	30	1.9	30	89	0	89	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54214582--54214830	50	4.8	50	85	4	284	20	29	24	26	1.99
54214581--54214830	100	2.4	104	88	6	357	20	29	24	26	1.99
54214925--54214956	13	2.5	13	94	0	55	56	12	0	31	1.37
54215168--54215225	30	1.9	30	89	0	89	31	24	3	41	1.71
54224711--54224784	39	1.9	38	86	8	105	32	6	5	55	1.49
54226440--54226541	25	4.1	25	72	7	64	38	17	20	23	1.93
54229104--54229434	61	5.5	59	82	7	400	52	4	11	31	1.58
54229113--54229433	121	2.7	121	86	3	434	52	4	11	31	1.57
54229866--54229908	21	2.0	21	100	0	86	27	0	9	62	1.25
54230451--54230789	171	2.0	171	92	1	563	44	11	15	29	1.81
54236314--54236451	53	2.6	53	79	4	143	29	22	13	34	1.92
54237884--54237934	15	3.7	13	80	17	50	29	1	0	68	1.00
54240870--54240903	13	2.6	14	86	13	54	20	0	5	73	1.04
54243130--54243168	19	2.1	19	90	0	60	38	2	12	46	1.56
54251271--54251307	12	3.1	12	88	11	58	48	0	0	51	1.00
54251360--54251585	107	2.1	105	92	5	299	46	3	10	40	1.53
54251373--54251594	112	2.0	109	95	4	403	46	2	9	40	1.51
54251572--54251618	24	2.0	24	82	0	58	40	4	25	29	1.75
54251419--54251648	112	2.1	109	80	10	252	47	3	11	36	1.58
54251745--54251877	40	3.5	39	73	18	122	69	6	21	3	1.23
54251782--54251818	18	2.1	18	89	0	56	72	0	21	5	1.04
54251718--54251877	72	2.2	72	88	3	252	70	5	19	4	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54252305--54252338	17	1.9	18	88	5	52	41	0	23	35	1.55
54254079--54254300	81	2.7	79	85	3	293	41	21	18	18	1.90
54254079--54254311	27	8.7	27	83	2	247	40	21	18	18	1.91
54254079--54254300	54	4.1	54	83	6	281	41	21	18	18	1.90
54260156--54260206	21	2.4	21	72	18	52	41	15	23	19	1.90
54266066--54266141	27	2.9	26	82	5	82	32	19	7	39	1.81
54266283--54266316	17	1.9	17	88	5	50	23	23	0	52	1.47
54275200--54275471	136	2.0	136	95	0	490	35	20	5	37	1.77
54275572--54275650	21	3.8	21	69	11	54	43	18	21	16	1.88
54275515--54275633	42	2.8	42	82	6	125	41	17	25	15	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211