genome.fa.s14.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  203  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59823397--59823429	17	2.0	17	88	5	50	51	12	15	21	1.75
59823418--59823460	20	2.2	20	91	8	70	30	9	11	48	1.71
59823595--59823627	6	5.8	6	92	7	52	66	0	0	33	0.92
59823595--59823627	11	2.9	12	86	13	52	66	0	0	33	0.92
59823584--59823650	22	3.0	21	77	12	64	67	1	1	29	1.09
59823584--59823635	17	3.1	18	81	15	58	65	0	1	32	1.04
59823932--59823970	17	2.3	17	95	0	69	2	12	20	64	1.40
59824057--59824081	12	2.1	12	100	0	50	0	16	60	24	1.36
59824117--59824175	9	6.5	10	77	18	58	0	25	0	74	0.82
59824277--59824321	23	2.0	23	90	0	72	11	13	6	68	1.37
59824516--59824703	59	3.2	57	76	10	184	43	5	19	31	1.75
59824530--59824711	29	6.2	29	81	8	181	41	4	18	35	1.72
59824509--59824687	88	2.0	88	85	6	238	44	5	17	32	1.72
59824883--59826035	76	14.9	75	86	7	1274	38	20	15	26	1.91
59824882--59826035	391	3.0	388	86	7	1550	38	20	15	26	1.91
59832574--59832858	17	15.9	17	72	10	178	45	11	12	30	1.78
59832574--59832865	35	8.1	34	73	11	165	45	11	12	29	1.78
59832599--59832767	90	1.9	90	84	7	227	47	11	9	31	1.71
59832574--59832865	18	16.2	17	74	14	198	45	11	12	29	1.78
59833308--59833340	6	5.8	6	92	7	52	66	0	0	33	0.92
59833308--59833340	11	2.9	12	86	13	52	66	0	0	33	0.92
59833297--59833363	22	3.0	21	77	12	64	67	1	1	29	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59833297--59833348	17	3.1	18	81	15	58	65	0	1	32	1.04
59833824--59833878	28	1.9	29	92	3	94	0	20	3	76	0.94
59834218--59834294	28	2.7	29	81	6	84	37	6	20	35	1.79
59834371--59834954	92	6.3	92	90	0	882	32	6	17	43	1.75
59834418--59834980	31	18.3	31	72	10	168	31	6	17	43	1.75
59843212--59843273	13	4.8	13	76	7	63	30	9	24	35	1.87
59844512--59844612	53	1.9	52	86	6	141	52	13	9	23	1.71
59844506--59845115	18	34.2	18	72	12	413	43	10	13	31	1.79
59844577--59844651	38	2.0	38	86	0	105	37	12	12	38	1.79
59844506--59845115	35	17.1	36	74	12	354	43	10	13	31	1.79
59845217--59845318	18	5.4	18	67	22	57	41	11	13	33	1.81
59845276--59845319	22	2.0	22	86	4	63	34	13	13	38	1.84
59845634--59845695	9	6.1	9	74	22	52	0	17	0	82	0.67
59845640--59845693	13	4.3	13	77	17	53	0	18	0	81	0.69
59845638--59845695	7	7.9	7	75	17	55	0	17	0	82	0.66
59845636--59845695	23	2.7	22	80	16	70	0	16	0	83	0.65
59845645--59845696	23	2.2	25	86	6	72	0	17	0	82	0.66
59845634--59845695	31	2.0	31	87	9	92	0	17	0	82	0.67
59845828--59845871	15	2.9	15	83	16	56	2	15	20	61	1.45
59845973--59846010	17	2.1	19	85	14	62	0	21	2	76	0.91
59846100--59846150	17	2.9	18	80	13	63	0	19	3	76	0.94
59846454--59846631	30	6.0	30	78	4	164	38	4	19	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59846497--59846548	13	3.7	13	72	18	50	44	7	13	34	1.72
59846459--59846625	89	1.9	89	86	2	237	38	4	20	36	1.73
59846454--59846629	59	3.0	57	74	8	163	38	4	19	36	1.73
59849475--59849621	10	15.8	9	68	17	68	61	5	3	29	1.35
59853101--59853161	22	3.0	21	73	17	58	50	0	0	49	1.00
59857718--59857770	6	8.5	6	89	8	79	33	15	0	50	1.44
59858258--59858335	31	2.6	29	76	11	77	26	11	8	52	1.67
59860243--59860320	33	2.4	33	84	0	102	46	2	3	47	1.34
59860951--59861037	2	43.5	2	100	0	174	0	50	0	49	1.00
59863422--59863451	2	15.0	2	92	0	51	3	0	46	50	1.18
59863451--59863480	2	15.0	2	100	0	60	50	0	50	0	1.00
59867922--59868003	34	2.4	34	79	0	92	39	26	6	28	1.80
59868938--59868971	15	2.3	15	89	0	50	52	8	0	38	1.33
59876582--59876623	22	2.0	22	90	4	68	33	7	14	45	1.72
59879096--59879156	29	2.1	29	81	9	70	47	4	14	32	1.66
59879291--59879353	32	2.0	31	84	6	81	25	19	6	49	1.71
59886372--59886409	17	2.2	17	86	9	51	63	2	0	34	1.09
59892998--59893042	20	2.2	20	88	0	63	22	4	6	66	1.33
59907696--59907754	24	2.4	23	81	15	66	38	0	0	61	0.96
59915123--59915214	22	4.2	22	86	5	105	30	28	0	41	1.56
59915123--59915214	44	2.1	44	84	8	116	30	28	0	41	1.56
59915164--59915266	52	2.0	51	81	12	122	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59915216--59915257	22	1.9	22	90	0	66	33	33	0	33	1.58
59915301--59915363	29	2.1	30	88	2	92	36	0	1	61	1.05
59915510--59915554	23	1.9	23	82	13	56	35	37	8	17	1.81
59928858--59928900	18	2.5	17	81	7	52	16	0	13	69	1.19
59929800--59929829	15	2.1	14	93	6	51	66	6	0	26	1.16
59931587--59931611	10	2.5	10	100	0	50	8	0	44	48	1.32
59932013--59932527	46	10.7	46	75	9	352	29	21	18	30	1.97
59932019--59932540	97	5.4	97	80	3	534	29	22	18	30	1.97
59932059--59932527	143	3.3	139	75	11	432	29	20	18	30	1.97
59932822--59932879	24	2.4	24	73	0	62	32	17	10	39	1.83
59948348--59948396	15	3.3	15	82	0	62	59	4	12	24	1.50
59948599--59948654	14	3.9	14	80	17	62	57	1	12	28	1.46
59960527--59960555	3	9.7	3	100	0	58	0	34	0	65	0.93
59961781--59961832	26	2.1	24	82	7	59	53	0	9	36	1.34
59961790--59961842	24	2.2	25	86	10	74	58	0	1	39	1.09
59962441--59962499	18	3.1	19	68	22	52	32	0	5	62	1.17
59962441--59962525	19	4.4	20	68	23	58	34	1	7	57	1.33
59962451--59962508	19	3.1	18	78	7	62	32	0	6	60	1.23
59963658--59963753	43	2.2	43	83	0	120	44	19	7	28	1.77
59964172--59964215	22	2.0	21	82	13	52	43	2	0	54	1.12
59964587--59964624	18	2.1	18	90	0	58	50	13	7	28	1.69
59964692--59964742	20	2.5	20	78	15	59	56	7	1	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59965840--59965901	22	2.9	20	70	21	54	56	11	3	29	1.50
59968988--59969015	2	14.0	2	100	0	56	50	0	0	50	1.00
59973030--59973067	11	3.6	11	86	10	53	47	0	0	52	1.00
59977027--59977161	56	2.4	56	86	0	180	31	10	14	44	1.78
59996032--59996075	23	1.9	23	86	9	63	36	13	9	40	1.76
59996813--59996842	3	10.0	3	100	0	60	66	33	0	0	0.92
59999066--59999113	19	2.8	16	82	17	60	54	0	0	45	0.99
60016133--60016212	25	3.2	25	75	7	74	25	25	13	36	1.92
60016180--60016246	25	2.7	26	73	13	68	28	19	19	32	1.96
60023475--60023526	24	2.2	24	92	0	86	51	7	3	36	1.49
60041790--60041833	18	2.4	19	81	11	56	70	6	0	22	1.11
60046363--60046435	26	2.9	26	81	4	87	20	20	20	38	1.94
60048329--60048434	43	2.5	43	87	0	149	30	24	16	29	1.96
60052350--60052388	18	2.2	18	86	13	55	35	0	20	43	1.52
60052614--60052785	23	7.5	23	80	0	202	23	20	26	29	1.99
60052614--60052785	46	3.8	46	88	0	247	23	20	26	29	1.99
60056151--60056184	15	2.2	16	94	5	61	26	17	5	50	1.69
60069789--60069835	21	2.2	22	92	3	78	21	19	38	21	1.94
60074568--60074626	29	2.0	30	83	6	75	40	0	40	18	1.51
60074912--60074942	9	3.4	9	90	0	53	38	22	12	25	1.90
60078628--60078722	42	2.3	42	86	0	136	21	27	35	15	1.94
60086172--60086690	125	4.1	126	85	3	699	36	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60089712--60089764	21	2.5	21	90	0	88	11	11	41	35	1.77
60090014--60090057	18	2.4	18	88	0	61	43	9	25	22	1.82
60093659--60093743	20	4.2	20	73	5	80	57	17	5	18	1.59
60093659--60093739	21	3.9	21	73	7	67	56	17	6	19	1.61
60093665--60093746	42	2.0	41	87	2	119	56	17	7	19	1.64
60094762--60094818	24	2.4	24	90	0	87	40	7	7	45	1.58
60107706--60107735	15	2.0	15	93	0	51	30	10	0	60	1.30
60107809--60107840	14	2.3	14	100	0	64	46	12	0	40	1.42
60107821--60107863	20	2.2	20	91	0	68	48	6	2	41	1.43
60108123--60108156	18	1.9	17	88	5	50	73	2	8	14	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211