genome.fa.s14.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  18  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4937517--4937564	22	2.2	22	81	7	53	54	2	6	37	1.38
4939071--4939171	38	2.6	39	85	4	132	32	8	0	57	1.36
4940598--4940634	17	2.3	17	86	9	51	40	0	2	56	1.13
4944925--4944956	14	2.3	14	94	0	55	81	9	0	9	0.88
4957860--4957917	22	2.7	23	76	15	61	20	3	10	65	1.38
4957990--4958038	15	3.5	15	72	16	59	28	8	8	55	1.58
4957982--4958045	27	2.7	22	77	22	76	28	7	6	57	1.51
4957986--4958040	27	2.0	27	100	0	110	29	7	7	56	1.53
4962581--4962622	3	14.0	3	100	0	84	33	0	0	66	0.92
4964493--4964582	38	2.4	38	100	0	180	3	28	12	55	1.52
4964637--4964686	25	2.0	25	96	0	91	20	38	12	30	1.88
4966573--4966639	26	2.6	26	97	2	127	47	10	19	22	1.79
4967525--4967590	33	2.0	33	93	0	114	40	16	7	34	1.77
4967683--4967839	69	2.3	68	88	4	226	28	5	14	51	1.65
4970717--4970922	90	2.3	90	90	2	315	45	3	4	46	1.39
4970841--4970894	27	2.1	25	86	6	72	42	0	3	53	1.18
4970757--4970897	43	3.2	42	68	20	108	46	2	3	48	1.31
4970949--4971137	59	3.2	57	68	19	152	41	3	4	50	1.39
4970976--4971174	66	3.2	64	67	22	179	41	3	6	48	1.46
4970938--4971235	120	2.5	120	93	1	508	42	2	5	49	1.38
4971011--4971198	61	3.1	61	68	14	190	42	2	6	48	1.42
4971012--4971195	59	3.1	58	67	22	164	42	2	7	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4971192--4971233	15	2.7	16	82	14	52	45	0	2	52	1.13
4971183--4971224	15	2.9	15	82	10	52	47	0	0	52	1.00
4971362--4971462	37	2.7	37	81	10	116	31	27	4	35	1.78
4971442--4971479	16	2.4	16	90	0	67	26	34	2	36	1.71
4971611--4971649	18	2.1	19	85	4	53	71	7	0	20	1.10
4971764--4972871	152	7.4	151	79	9	1054	29	10	7	53	1.61
4972291--4972341	26	2.0	26	84	7	68	29	3	5	60	1.38
4971775--4972798	151	6.8	149	79	8	976	29	9	6	53	1.59
4973061--4973484	125	3.4	125	88	2	636	31	17	21	29	1.96
4976466--4976496	9	3.4	9	90	0	53	25	12	22	38	1.90
4976550--4976586	9	4.1	9	85	0	56	48	13	8	29	1.71
4977158--4977426	114	2.4	114	94	0	457	39	4	10	44	1.60
4977177--4977341	37	4.4	38	67	17	101	40	6	9	44	1.62
4979549--4979652	51	2.0	51	83	7	129	46	2	24	26	1.67
4980329--4980408	42	1.9	42	87	10	119	53	5	1	40	1.31
4982501--4982600	50	2.0	50	92	0	164	40	19	12	29	1.87
4984190--4984250	30	2.1	28	87	6	86	27	1	11	59	1.42
4984372--4984404	11	2.9	12	86	13	52	66	0	0	33	0.92
4987065--4987116	18	3.1	17	77	5	52	48	5	1	44	1.38
4987281--4987321	13	3.2	13	89	6	66	63	0	2	34	1.08
4992765--4992885	63	1.9	63	89	0	188	23	24	29	22	1.99
4998190--4998214	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4999296--4999419	25	5.1	25	74	14	134	42	0	14	42	1.45
4999422--4999463	9	4.7	9	91	8	68	30	0	11	57	1.35
4999493--4999764	46	5.8	46	86	6	377	50	23	2	23	1.62
4999494--4999748	69	3.6	70	87	5	361	51	21	2	23	1.59
4999472--4999732	120	2.2	120	93	2	436	52	21	3	23	1.61
4999494--4999764	23	11.6	22	85	9	312	50	23	2	23	1.60
5001001--5001342	124	2.8	124	90	0	524	33	20	17	28	1.95
5002009--5002051	18	2.5	17	82	10	52	37	2	6	53	1.41
5004165--5004199	18	1.9	19	88	11	56	17	8	0	74	1.06
5013155--5013194	21	2.0	20	85	5	53	45	5	0	50	1.23
5017277--5017317	21	2.0	21	90	0	64	29	21	29	19	1.98
5022613--5022662	26	2.0	25	84	4	64	28	2	6	64	1.28
5022705--5022754	20	2.5	20	83	0	73	38	2	2	58	1.21
5026395--5026512	40	3.0	40	91	0	191	38	2	0	58	1.18
5026459--5026515	29	2.0	29	86	6	80	40	1	1	56	1.20
5026404--5026529	11	12.4	11	66	23	71	38	2	0	57	1.17
5026492--5026529	19	2.0	20	94	5	69	34	0	0	65	0.93
5026492--5026536	19	2.2	21	88	7	67	31	0	4	64	1.13
5030706--5030744	20	2.0	20	85	14	55	17	5	0	76	0.96
5033073--5033103	16	1.9	16	93	0	53	54	9	0	35	1.33
5044063--5044109	21	2.2	21	80	0	58	2	44	19	34	1.62
5047217--5047441	9	25.9	9	70	13	141	31	3	19	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5047206--5047310	25	4.2	25	77	11	115	33	2	18	45	1.64
5047712--5047763	13	4.0	13	92	0	77	42	1	9	46	1.47
5047609--5047744	53	2.6	53	84	0	191	44	5	10	38	1.63
5047843--5048100	47	5.1	52	72	23	264	49	3	7	39	1.46
5047832--5048141	100	3.1	100	100	0	620	49	2	6	40	1.44
5047857--5048127	53	5.3	53	73	23	276	50	2	7	39	1.45
5048541--5048613	7	10.3	7	76	8	76	71	10	12	5	1.30
5048541--5048615	21	3.5	22	78	17	86	70	10	12	6	1.33
5048544--5048613	28	2.5	28	86	6	88	71	10	12	5	1.30
5048617--5048660	18	2.4	19	84	3	54	56	13	15	13	1.67
5049919--5050330	198	2.1	198	89	1	639	33	19	16	29	1.94
5050718--5050809	47	2.0	47	86	0	130	46	2	7	43	1.44
5050797--5050844	18	2.6	19	81	18	66	14	4	2	79	0.98
5050882--5050908	14	1.9	14	100	0	54	44	7	0	48	1.31
5050979--5051155	95	1.8	97	81	4	225	41	27	1	29	1.66
5051134--5051177	7	6.3	7	94	0	79	27	43	0	29	1.55
5051301--5051339	12	3.1	12	89	10	60	33	51	0	15	1.44
5051312--5051351	21	1.9	21	94	0	71	35	47	0	17	1.48
5051301--5051340	14	3.1	13	92	7	64	32	52	0	15	1.43
5051381--5051414	15	2.3	15	90	5	52	35	29	0	35	1.58
5051747--5051952	114	1.8	114	81	6	256	30	23	14	31	1.94
5051900--5052038	74	1.9	75	86	4	201	30	22	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5051771--5052159	188	2.1	188	92	0	652	29	22	15	32	1.95
5051956--5052551	114	5.2	111	72	10	434	29	21	16	33	1.95
5051956--5052553	227	2.6	224	87	3	840	29	21	16	33	1.95
5051974--5052551	113	5.1	110	73	11	486	29	21	16	32	1.95
5053544--5053609	20	3.4	19	72	8	62	19	16	9	54	1.68
5053564--5053620	19	2.9	19	71	5	60	19	21	7	52	1.69
5053539--5053657	39	3.1	39	95	2	206	19	20	7	52	1.69
5053602--5053664	22	3.2	22	62	29	59	14	19	9	57	1.64
5053548--5053664	37	3.1	37	95	2	198	17	19	8	54	1.68
5059310--5059356	23	2.1	23	84	4	60	48	0	2	48	1.13
5066669--5066869	106	1.9	106	96	0	375	29	20	19	30	1.97
5067645--5067678	14	2.4	14	90	0	50	55	14	0	29	1.40
5068992--5069156	88	1.9	87	86	5	235	40	20	8	30	1.82
5069291--5069348	18	3.2	17	78	9	62	67	1	3	27	1.17
5069472--5069515	16	2.6	18	86	13	67	72	0	2	25	0.96
5069655--5069777	29	4.3	29	67	16	94	35	1	0	61	1.11
5069634--5069719	38	2.3	37	84	7	111	29	2	2	66	1.16
5069562--5069725	58	2.8	57	78	10	147	29	4	2	62	1.29
5069620--5069794	9	18.6	9	68	17	70	30	2	1	65	1.17
5072572--5072663	18	5.2	18	88	2	132	28	23	16	31	1.96
5072572--5072665	35	2.6	36	91	3	163	28	23	17	30	1.97
5080996--5081056	13	4.3	13	72	25	52	34	1	3	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5086893--5086933	21	2.0	21	90	0	64	29	21	29	19	1.98
5096638--5096665	11	2.5	11	100	0	56	35	0	0	64	0.94
5097411--5097465	25	2.2	25	87	3	76	58	0	1	40	1.09
5102262--5102310	22	2.2	22	82	13	57	71	6	2	20	1.18
5102371--5102430	29	2.1	28	81	6	68	23	10	16	50	1.75
5107207--5107248	22	1.9	22	85	9	59	66	0	4	28	1.12
5108600--5108634	18	1.9	18	88	0	52	34	37	0	28	1.58
5113244--5113352	57	1.9	57	100	0	218	53	3	3	39	1.36
5113243--5113374	57	2.3	57	90	1	210	53	4	3	37	1.39
5116693--5116732	14	2.9	14	84	0	53	42	17	7	32	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211