genome.fa.s14.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  38  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10171961--10172059	47	2.1	47	83	7	121	29	3	2	65	1.18
10171980--10172037	29	2.1	29	84	12	79	27	3	1	67	1.17
10172017--10172069	22	2.6	19	77	13	61	24	0	1	73	0.93
10172081--10172108	7	4.0	7	100	0	56	28	42	14	14	1.84
10174169--10174229	30	2.0	30	96	0	113	44	18	3	34	1.66
10175608--10175665	30	1.9	30	85	0	80	37	5	24	32	1.77
10175996--10176237	50	4.7	50	78	5	202	26	22	28	23	1.99
10183646--10183765	61	2.0	62	83	5	154	40	15	3	41	1.63
10196497--10196532	5	7.2	5	96	0	63	0	38	0	61	0.96
10199174--10199228	21	2.6	21	94	0	92	32	9	29	29	1.88
10202297--10202370	24	3.1	24	86	3	96	13	27	22	36	1.92
10202307--10202378	24	3.0	23	84	10	90	15	26	23	34	1.94
10202307--10202388	24	3.4	24	83	8	87	15	25	21	36	1.94
10204600--10204646	23	2.0	24	87	4	69	38	17	6	38	1.75
10204623--10204677	19	2.7	21	88	11	96	36	14	10	38	1.81
10208582--10208616	15	2.4	14	90	9	52	42	0	11	45	1.40
10216032--10216480	9	50.2	9	68	20	146	38	2	14	44	1.57
10216037--10216160	16	7.9	16	72	18	109	35	1	16	45	1.58
10216051--10216210	25	6.2	25	74	11	126	37	1	15	45	1.54
10216218--10216249	16	2.0	16	100	0	64	31	0	25	43	1.55
10216258--10216627	31	11.8	31	79	10	357	37	2	12	47	1.53
10216236--10216630	96	4.1	96	87	7	538	37	2	12	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10216447--10216510	14	4.1	14	73	23	56	43	0	6	50	1.27
10216495--10216538	22	2.0	22	95	0	79	40	0	11	47	1.39
10216582--10216681	9	11.1	9	74	19	68	38	0	15	47	1.45
10216614--10216646	16	2.1	16	100	0	66	30	0	24	45	1.53
10216583--10216680	47	2.0	49	86	5	137	36	0	15	47	1.45
10216745--10216777	16	2.1	16	100	0	66	30	18	0	51	1.46
10217637--10217700	34	1.9	34	90	3	103	65	14	0	20	1.26
10218056--10218142	38	2.3	38	95	0	165	47	12	18	21	1.82
10219463--10219509	18	2.7	18	75	24	55	70	12	0	17	1.17
10219445--10219509	35	1.9	33	87	6	94	66	13	0	20	1.25
10219863--10219949	38	2.3	38	95	0	165	47	12	18	21	1.82
10220785--10220883	44	2.2	44	98	0	189	38	21	7	33	1.80
10221296--10221359	34	1.9	34	90	3	103	65	14	0	20	1.26
10221713--10221799	38	2.3	38	95	0	165	47	12	18	21	1.82
10223206--10223454	89	2.8	89	93	1	423	45	24	2	28	1.64
10223389--10223527	68	2.1	66	81	10	158	46	18	0	34	1.55
10224296--10224491	41	4.8	41	90	2	304	17	17	26	38	1.91
10224296--10224556	123	2.1	123	81	6	289	18	18	24	38	1.93
10224927--10224996	16	4.4	16	67	16	56	27	1	21	50	1.57
10224929--10225009	23	3.5	23	72	22	80	23	1	24	50	1.56
10225020--10225060	22	1.9	21	85	14	57	19	0	24	56	1.42
10229346--10229402	9	6.7	9	76	9	57	42	12	1	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10229369--10229400	16	2.0	16	93	0	55	46	12	0	40	1.42
10229495--10229564	12	6.0	12	80	6	81	48	17	2	31	1.61
10229512--10229564	22	2.3	24	87	6	74	52	16	0	30	1.44
10229618--10229966	9	38.2	9	78	8	357	46	18	3	31	1.67
10229619--10229959	55	6.4	54	80	11	287	46	18	3	31	1.67
10230138--10230302	41	3.9	41	80	14	192	32	3	0	64	1.09
10230189--10230351	11	15.9	11	77	16	88	38	3	0	58	1.14
10230211--10230241	9	3.4	9	95	0	53	16	3	0	80	0.83
10230221--10230302	39	2.1	38	91	6	130	32	1	0	65	1.00
10230277--10230331	12	4.8	12	93	6	87	41	3	0	54	1.18
10230546--10231118	9	63.0	9	77	5	562	47	17	3	31	1.64
10230529--10231118	100	5.9	99	85	4	711	47	17	3	31	1.63
10236481--10236616	66	2.1	66	92	0	227	41	18	26	13	1.88
10236966--10237270	43	7.1	43	93	0	495	26	18	28	26	1.98
10237424--10237584	41	3.9	41	90	1	243	33	23	21	21	1.97
10237622--10237756	40	3.4	40	76	11	136	20	22	20	37	1.95
10241444--10241478	15	2.4	14	90	9	52	42	0	11	45	1.40
10244051--10244098	6	7.8	6	84	13	53	20	2	0	77	0.88
10244891--10244934	3	14.7	3	100	0	88	34	0	0	65	0.93
10247330--10247646	125	2.5	125	84	4	424	28	16	24	31	1.96
10250826--10250885	22	2.7	23	85	7	72	25	1	30	43	1.64
10250826--10251104	43	6.2	44	76	11	176	21	1	27	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10250869--10251060	22	8.7	22	83	2	233	19	0	28	52	1.50
10250889--10251104	22	10.0	21	79	6	137	20	1	27	50	1.58
10253626--10253669	11	3.8	12	80	19	58	43	0	31	25	1.55
10254704--10254739	15	2.4	15	90	0	54	5	36	5	52	1.48
10259772--10259835	32	2.0	32	96	0	119	45	9	17	28	1.79
10261550--10261686	43	3.2	43	65	17	111	24	23	24	27	2.00
10261479--10262092	87	7.1	87	89	0	937	24	25	21	28	1.99
10261479--10262092	173	3.5	173	91	0	978	24	25	21	28	1.99
10261479--10262092	260	2.4	260	89	1	953	24	25	21	28	1.99
10263744--10263817	27	2.8	25	80	12	76	12	10	10	66	1.46
10263805--10263833	6	4.8	6	100	0	58	17	0	17	65	1.27
10272713--10272759	13	3.5	13	83	11	58	25	40	23	10	1.87
10276405--10276469	5	12.2	5	79	12	58	30	21	4	43	1.73
10276393--10276453	17	3.6	17	75	0	50	34	19	3	42	1.68
10276393--10276468	22	3.5	22	78	7	91	32	19	3	43	1.70
10276409--10276454	12	4.0	12	77	11	51	30	21	4	43	1.72
10278991--10279260	137	2.0	137	90	1	425	25	14	13	45	1.82
10279361--10279412	25	2.1	25	92	0	86	13	25	17	44	1.85
10280956--10281143	61	3.1	61	64	17	147	41	2	6	48	1.44
10281004--10281038	18	2.0	17	88	5	52	45	0	0	54	0.99
10280936--10281180	120	2.0	121	93	0	420	42	2	6	49	1.41
10281137--10281178	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10281128--10281169	15	2.9	15	82	10	52	47	0	0	52	1.00
10281116--10281385	88	3.2	88	66	18	248	46	3	3	46	1.37
10281112--10281408	163	1.8	163	97	0	567	47	3	3	45	1.37
10281287--10281321	18	2.0	17	88	5	52	45	0	0	54	0.99
10281113--10281357	82	3.1	75	64	20	181	46	3	3	46	1.36
10281469--10281573	44	2.5	40	76	18	115	32	29	3	34	1.76
10281467--10281576	45	2.6	44	81	11	133	32	29	4	33	1.78
10281555--10281592	16	2.4	16	90	0	58	34	34	0	31	1.58
10284697--10284749	22	2.4	22	84	6	72	33	32	0	33	1.58
10284783--10284836	27	2.0	27	89	7	83	42	0	1	55	1.10
10284928--10284961	15	2.3	15	90	5	52	26	0	5	67	1.13
10285921--10285957	7	5.3	7	100	0	74	27	0	13	59	1.35
10286609--10286643	18	1.9	18	88	0	52	28	34	8	28	1.87
10286809--10286864	24	2.3	24	100	0	112	28	35	17	17	1.93
10287231--10287302	23	3.1	23	94	4	119	48	15	0	36	1.45
10287213--10288099	28	32.9	23	70	24	185	43	22	0	32	1.60
10287264--10288496	57	21.7	57	78	11	623	43	23	0	32	1.59
10287651--10287702	7	7.1	7	75	16	52	42	36	0	21	1.53
10287859--10287902	23	2.0	23	95	4	81	31	38	2	27	1.69
10287934--10288196	28	9.6	25	80	12	140	45	20	0	33	1.54
10288317--10288509	23	7.4	23	73	22	152	44	24	0	31	1.54
10288350--10288473	28	4.2	32	71	26	103	43	20	0	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10287264--10288509	29	44.0	29	77	10	1009	43	23	0	32	1.59
10291702--10291983	125	2.3	125	90	4	444	32	22	15	29	1.95
10292820--10293133	123	2.6	123	92	0	520	31	14	20	33	1.93
10296437--10296852	44	9.5	42	81	11	260	26	0	28	44	1.55
10296523--10298297	113	15.8	112	82	10	1817	27	0	25	47	1.52
10296523--10298297	23	78.8	23	78	12	1732	27	0	25	47	1.52
10297176--10297203	13	2.2	13	100	0	56	14	0	35	50	1.43
10297153--10297226	36	2.1	36	100	0	148	24	0	27	48	1.51
10297808--10297835	13	2.2	13	100	0	56	14	0	35	50	1.43
10297785--10297858	36	2.1	36	100	0	148	24	0	27	48	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211