genome.fa.s14.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D01
Parameters: 2 7 7 80 10 50 1000
Length:  62811768

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  141  of  211  ( 25234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986735--41986781	21	2.2	21	96	0	85	25	27	8	38	1.85
41988568--41988685	49	2.4	49	81	4	139	23	22	20	33	1.97
41988614--41988904	50	5.7	50	81	3	278	21	28	22	27	1.99
41988557--41988905	50	6.9	50	78	5	265	22	27	21	28	1.99
41993032--41993073	19	2.2	19	95	0	75	23	30	14	30	1.94
41993117--41993149	17	1.9	17	93	0	57	57	9	12	21	1.62
41993261--41993290	14	2.1	15	93	6	53	0	43	0	56	0.99
42002393--42002456	30	2.1	30	85	0	83	18	23	28	29	1.98
42004179--42004275	48	2.0	48	87	0	140	30	4	21	43	1.71
42004227--42004415	91	2.1	91	82	4	229	28	5	20	45	1.74
42007090--42007141	27	1.9	27	96	0	95	30	21	26	21	1.98
42007307--42007368	26	2.3	26	83	2	79	20	19	20	38	1.93
42007801--42007850	21	2.4	21	83	3	57	42	12	16	30	1.84
42014374--42014562	91	2.1	91	82	7	224	29	5	19	44	1.74
42015857--42015952	36	2.7	36	91	1	149	30	6	20	42	1.77
42018280--42018350	33	2.2	33	89	0	106	45	14	36	4	1.64
42029983--42030099	40	2.9	40	82	2	110	37	16	28	17	1.92
42030603--42030633	15	2.1	15	100	0	62	25	12	6	54	1.62
42032677--42032724	19	2.5	20	83	13	64	52	6	0	41	1.27
42032665--42032724	20	3.0	20	80	9	70	50	6	0	43	1.28
42032703--42032755	26	2.0	26	82	7	63	50	3	0	45	1.19
42032794--42032820	14	1.9	14	100	0	54	66	22	0	11	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42033070--42033127	23	2.5	23	88	5	82	44	10	1	43	1.48
42033187--42033239	27	2.0	27	88	0	79	22	28	28	20	1.99
42033279--42033409	4	31.0	4	74	17	81	69	0	29	0	0.99
42033281--42033439	39	4.3	36	78	19	143	69	0	28	1	1.01
42033306--42033434	40	3.1	44	79	17	161	70	0	27	0	0.98
42033306--42033468	79	2.0	80	83	9	208	69	0	28	1	1.01
42039228--42039272	18	2.5	18	88	0	72	15	48	6	28	1.70
42040187--42040322	41	3.3	41	82	6	134	23	22	22	31	1.98
42040226--42040341	41	2.8	42	81	12	118	23	20	25	30	1.99
42041335--42041394	27	2.2	28	82	8	72	46	5	6	41	1.52
42041466--42041511	24	2.0	24	83	12	60	41	0	6	52	1.27
42041847--42042061	115	1.9	116	80	4	256	28	15	18	37	1.92
42044704--42045473	213	3.6	213	96	0	1427	40	9	7	41	1.67
42045479--42045854	9	43.8	9	72	12	238	46	22	2	28	1.66
42045475--42045576	25	4.1	25	79	2	107	46	20	2	30	1.66
42045571--42045643	37	2.0	37	94	0	128	47	19	2	30	1.63
42045656--42045855	25	7.8	25	83	2	229	45	23	3	29	1.68
42045479--42045854	34	10.5	35	71	15	191	46	22	2	28	1.66
42051312--42051368	21	2.7	21	86	5	62	38	21	38	1	1.64
42051333--42051388	12	4.9	12	76	12	64	39	19	39	1	1.62
42051834--42052103	85	3.2	83	82	7	303	25	22	20	30	1.98
42051834--42052103	42	6.3	42	83	5	305	25	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42052496--42052534	20	2.0	21	85	10	55	66	10	0	23	1.22
42052656--42052729	27	2.7	27	89	8	107	17	29	29	22	1.97
42052783--42052827	22	2.0	22	95	0	81	57	0	6	35	1.25
42055207--42055276	35	2.0	35	86	5	97	47	4	0	48	1.21
42055217--42055273	23	2.5	22	80	8	60	43	5	0	50	1.24
42055276--42055360	25	3.1	25	76	20	98	45	0	0	54	1.00
42055288--42055351	15	4.0	17	76	11	73	45	0	0	54	0.99
42055870--42055906	14	2.7	14	91	4	58	10	2	8	78	1.06
42060640--42060819	27	6.7	26	87	5	207	38	21	17	22	1.93
42060640--42060819	81	2.2	80	85	3	236	38	21	17	22	1.93
42061051--42061161	32	3.5	32	91	0	186	18	20	22	38	1.93
42062761--42062796	18	2.0	18	88	0	54	50	5	11	33	1.61
42063268--42063303	2	18.0	2	100	0	72	50	0	50	0	1.00
42064665--42064715	25	2.0	25	82	17	61	21	35	1	41	1.65
42072125--42072697	27	21.2	27	86	2	713	43	18	20	17	1.88
42080219--42080271	20	2.6	21	76	8	65	7	35	20	35	1.81
42081170--42081222	27	2.0	27	85	7	72	50	13	7	28	1.68
42102135--42102233	51	2.0	50	82	6	119	50	16	12	21	1.77
42102159--42102335	51	3.5	51	83	3	205	51	15	10	22	1.73
42112753--42112897	52	2.8	51	77	9	152	11	26	19	43	1.84
42113230--42113267	17	2.2	17	86	9	51	2	5	13	78	1.02
42113229--42113293	12	5.2	12	76	10	58	1	6	12	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42116008--42116054	19	2.5	20	86	6	62	44	8	19	27	1.79
42118857--42119040	40	4.6	39	77	8	165	27	27	21	23	1.99
42118820--42119040	80	2.8	80	78	7	193	26	27	21	24	1.99
42118860--42119040	80	2.3	80	83	9	210	27	27	21	23	1.99
42133753--42133824	26	2.8	26	73	0	72	18	16	27	37	1.92
42134123--42134201	40	2.0	40	89	0	122	43	3	17	35	1.68
42147338--42147367	14	2.1	14	93	0	51	83	0	16	0	0.65
42156154--42156193	21	1.9	21	84	0	53	70	5	10	15	1.32
42157139--42157173	15	2.4	15	90	4	54	48	0	8	42	1.33
42160850--42160876	14	1.9	14	100	0	54	22	14	25	37	1.93
42167004--42167039	18	2.0	18	88	0	54	19	8	19	52	1.70
42167305--42167348	20	2.3	18	84	7	52	36	0	4	59	1.18
42167761--42167814	20	2.5	21	85	8	65	59	3	0	37	1.15
42167798--42167852	11	5.5	10	77	14	60	56	0	0	43	0.99
42167782--42167862	29	2.7	29	88	3	117	59	0	0	40	0.98
42167782--42167861	30	2.6	30	90	5	117	58	0	0	41	0.98
42167803--42167842	19	2.1	20	81	13	57	55	0	0	45	0.99
42169401--42169447	19	2.4	19	76	13	51	14	10	2	72	1.21
42169484--42169554	16	4.4	16	87	0	97	38	7	25	29	1.82
42169536--42169629	44	2.1	46	88	7	140	31	6	27	34	1.82
42169731--42169899	63	2.8	61	86	8	202	52	2	2	42	1.29
42170605--42170662	25	2.4	25	85	2	91	24	25	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42200619--42200667	24	2.2	23	79	20	59	57	6	0	36	1.24
42207704--42208159	47	9.6	47	93	2	741	32	8	29	28	1.87
42207704--42208159	96	4.8	96	94	1	785	32	8	29	28	1.87
42207704--42208159	143	3.2	141	92	3	741	32	8	29	28	1.87
42217526--42217564	20	1.9	20	84	5	51	69	5	10	15	1.34
42218510--42218544	15	2.4	15	90	4	54	48	0	8	42	1.33
42222645--42222694	22	2.2	23	82	3	57	70	8	16	6	1.32
42225417--42225443	14	1.9	14	100	0	54	22	0	14	62	1.31
42228994--42229045	24	2.2	24	85	0	68	51	5	3	38	1.44
42231445--42231497	28	2.0	26	85	7	70	54	3	1	39	1.29
42232817--42233337	260	2.0	259	91	1	839	40	19	11	28	1.86
42235670--42235704	17	2.1	17	89	5	54	37	2	2	57	1.29
42236454--42236519	31	2.1	31	85	0	87	27	22	13	36	1.92
42243555--42243589	18	1.9	18	88	0	52	40	0	42	17	1.49
42247161--42247338	28	6.5	27	77	9	121	32	26	10	31	1.89
42247170--42247304	28	4.9	28	79	5	132	33	26	10	29	1.90
42252360--42252388	5	5.8	5	100	0	58	58	0	0	41	0.98
42253439--42253474	16	2.2	16	100	0	72	25	0	36	38	1.56
42253710--42253744	18	2.0	17	88	5	52	54	0	0	45	0.99
42253624--42253918	162	1.8	163	96	0	547	44	3	4	48	1.38
42253852--42253893	15	2.7	16	82	14	52	52	2	0	45	1.13
42253861--42253902	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42253971--42254022	15	3.6	15	80	12	56	53	1	0	44	1.11
42254091--42254142	15	3.6	15	80	12	56	53	1	0	44	1.11
42253855--42254260	120	3.4	120	96	2	728	49	5	2	42	1.38
42254308--42254355	26	1.9	25	84	16	64	52	2	0	45	1.12
42254264--42254491	92	2.5	92	83	8	234	47	4	3	45	1.38
42264855--42264901	23	2.1	22	84	11	60	25	2	2	70	1.10
42266867--42267014	28	5.2	28	72	16	92	30	25	17	26	1.97
42266917--42267094	29	6.3	29	83	7	215	35	23	17	23	1.95
42266917--42267094	86	2.1	83	86	6	241	35	23	17	23	1.95
42269078--42269182	54	1.9	54	84	0	138	20	26	26	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211