genome.fa.s3.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  100  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34165051--34165093	22	2.0	22	90	0	68	46	25	16	11	1.80
34166309--34167954	823	2.0	823	100	0	3292	33	18	16	31	1.93
34172274--34172389	44	2.7	44	80	6	119	30	28	17	24	1.97
34172553--34172589	17	2.2	17	95	0	65	24	2	21	51	1.61
34173814--34173953	46	3.0	45	92	4	226	34	9	27	29	1.88
34175923--34176276	177	2.0	178	94	1	622	35	15	11	37	1.84
34183953--34183987	18	2.0	17	88	5	52	45	0	0	54	0.99
34184223--34184258	16	2.2	16	100	0	72	38	36	0	25	1.56
34192496--34192550	16	3.4	16	84	0	74	30	23	5	40	1.77
34193318--34193353	16	2.2	16	95	0	63	41	0	2	55	1.14
34195980--34196087	51	2.1	52	89	1	164	28	19	7	44	1.77
34196083--34196120	20	2.0	20	84	5	51	15	15	5	63	1.48
34197417--34197456	21	1.9	21	84	0	53	65	2	5	27	1.27
34197578--34197673	21	4.8	20	78	15	101	57	1	4	37	1.25
34197536--34197673	51	2.7	49	75	11	134	57	0	5	35	1.28
34197598--34197678	41	2.0	41	85	4	110	54	2	3	39	1.32
34197978--34198020	21	2.0	21	100	0	86	39	32	9	18	1.83
34209366--34209444	22	3.5	22	75	3	68	81	7	6	5	1.00
34209368--34209432	34	1.9	33	84	3	85	80	9	4	6	1.03
34212642--34212750	46	2.4	44	78	6	121	31	21	22	25	1.98
34212631--34213145	44	11.9	43	68	11	205	31	19	21	27	1.97
34212588--34213168	175	3.4	174	87	1	855	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34215413--34215448	16	2.2	16	90	0	54	36	8	2	52	1.46
34215953--34216273	109	3.0	109	87	2	470	32	15	18	33	1.92
34217247--34217286	20	2.0	20	85	5	53	17	7	42	32	1.77
34224492--34224538	21	2.2	22	81	11	53	48	10	10	29	1.71
34225827--34225883	29	1.9	30	92	3	98	14	31	33	21	1.92
34229614--34229690	21	3.5	22	77	15	72	63	2	33	0	1.08
34232664--34233356	346	2.0	346	100	0	1386	20	23	16	39	1.92
34236732--34236901	81	2.1	81	92	0	277	45	12	24	17	1.83
34239010--34239045	15	2.5	14	86	8	54	44	8	0	47	1.33
34239117--34239308	98	2.0	98	94	0	339	19	25	13	42	1.87
34248036--34249043	44	22.4	44	69	7	351	34	16	19	29	1.94
34248065--34248257	96	2.0	96	81	6	221	34	15	19	30	1.93
34248162--34249036	89	9.8	88	72	6	391	34	16	18	30	1.94
34248037--34248407	140	2.7	140	78	7	343	33	16	20	29	1.95
34248161--34248594	222	1.9	224	83	1	550	33	15	20	30	1.94
34248433--34248849	135	3.1	133	80	5	428	36	16	17	29	1.92
34248648--34248788	49	2.9	49	78	6	171	39	14	17	29	1.88
34248564--34248788	95	2.5	89	79	7	238	39	15	16	29	1.89
34248971--34249085	43	2.6	44	79	4	117	28	20	23	27	1.99
34250568--34250625	15	3.8	15	77	11	55	29	8	1	60	1.36
34253922--34253974	26	2.0	26	88	0	79	33	13	3	49	1.60
34253924--34253983	26	2.4	25	83	8	68	30	15	3	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34261805--34261886	23	3.5	22	80	12	83	29	24	25	20	1.99
34261805--34261896	23	3.9	22	78	15	78	30	23	25	20	1.99
34261805--34261896	46	1.9	48	80	10	109	30	23	25	20	1.99
34268059--34268139	37	2.2	37	88	2	119	28	16	14	40	1.88
34277053--34277113	30	2.0	30	93	6	106	54	9	8	27	1.62
34290439--34290472	13	2.4	14	90	9	52	20	0	0	79	0.73
34292627--34292823	98	2.0	98	93	0	340	37	23	10	29	1.88
34294769--34295110	44	7.9	44	71	12	208	27	22	20	29	1.99
34294691--34295197	44	11.6	44	67	14	192	27	22	20	29	1.99
34294871--34295109	129	1.9	128	81	6	295	27	20	21	29	1.98
34294686--34295114	173	2.5	175	86	3	562	26	21	21	29	1.99
34314685--34314736	7	7.9	7	79	16	58	86	9	1	1	0.72
34314685--34314738	26	2.2	26	90	6	85	87	9	1	1	0.71
34315174--34315205	14	2.3	14	94	0	55	84	0	3	12	0.74
34316123--34316241	44	2.7	45	82	3	143	30	20	21	28	1.98
34316704--34316813	45	2.5	44	86	1	139	26	25	23	24	2.00
34318888--34318920	13	2.6	13	90	4	50	21	6	0	72	1.05
34320295--34320344	17	2.9	16	82	8	55	66	0	0	34	0.92
34320292--34320344	18	3.1	18	81	15	67	64	0	0	35	0.94
34327788--34327857	30	2.3	30	85	0	86	42	18	14	24	1.87
34327811--34327857	15	3.1	15	78	0	58	42	21	14	21	1.88
34335577--34335626	26	1.9	26	95	0	91	24	2	6	68	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34335469--34335802	166	2.0	166	100	0	668	28	15	15	40	1.88
34335743--34335792	26	1.9	26	95	0	91	24	2	6	68	1.23
34337033--34337095	21	3.1	21	77	8	69	68	1	3	26	1.14
34338820--34338982	44	3.7	44	77	1	164	29	22	17	30	1.97
34338819--34339022	44	4.6	45	72	2	117	29	22	19	29	1.98
34338819--34339028	89	2.4	89	84	0	269	29	22	18	29	1.98
34338819--34339055	89	2.7	89	81	1	206	29	22	19	27	1.98
34340238--34340392	47	3.2	47	80	14	174	13	26	16	43	1.84
34340238--34340393	49	3.2	47	84	10	192	13	26	16	43	1.85
34346063--34346125	21	3.1	21	77	8	69	68	1	3	26	1.14
34347456--34347693	118	2.0	119	98	0	460	32	11	13	42	1.81
34350580--34350630	19	2.6	19	84	6	57	29	5	0	64	1.17
34351553--34351609	20	2.6	22	83	8	73	28	0	5	66	1.13
34359433--34359549	23	4.8	22	83	12	108	24	24	17	32	1.97
34359469--34359549	23	3.4	23	91	8	119	24	24	18	32	1.97
34368233--34368427	97	2.0	98	98	1	383	39	11	5	44	1.63
34371329--34371384	24	2.3	26	81	12	73	35	1	5	57	1.32
34372192--34372264	28	2.5	30	82	10	89	36	1	9	52	1.43
34372335--34372388	25	2.2	25	83	3	65	37	1	3	57	1.27
34387808--34387953	42	3.2	42	82	13	157	28	19	20	30	1.97
34387808--34387911	53	2.0	53	96	0	190	29	19	20	30	1.97
34387860--34387974	42	2.8	42	86	1	124	28	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34395954--34396115	42	3.9	42	89	1	236	27	20	20	30	1.98
34397585--34397636	19	2.7	19	90	3	86	46	19	1	32	1.61
34399981--34400037	19	2.7	22	76	15	66	40	17	7	35	1.77
34399971--34400028	22	2.6	22	81	7	64	41	17	5	36	1.72
34400007--34400098	19	4.8	19	89	0	148	39	15	8	36	1.78
34400000--34400098	38	2.7	38	92	3	166	38	16	8	37	1.78
34400738--34401114	44	8.7	44	72	9	233	28	23	19	28	1.98
34400686--34401130	217	2.0	218	90	1	705	26	23	19	29	1.98
34401479--34401598	44	2.7	44	85	10	165	30	26	16	26	1.97
34401588--34402090	88	5.7	88	85	4	609	21	23	27	27	1.99
34401632--34401776	44	3.3	43	63	7	103	23	24	27	24	2.00
34401598--34402090	176	2.8	174	85	2	689	21	23	27	27	1.99
34401598--34402091	264	1.9	265	89	0	765	21	23	27	28	1.99
34403185--34403234	21	2.2	23	82	10	59	8	16	2	74	1.15
34404173--34404233	26	2.3	26	83	5	70	55	6	14	22	1.62
34408663--34408774	19	5.7	19	85	5	134	40	13	8	38	1.74
34408663--34408774	38	2.8	38	90	5	161	40	13	8	38	1.74
34410366--34410991	312	2.0	312	99	0	1243	32	24	13	29	1.93
34414327--34414636	43	7.4	42	82	6	310	30	22	19	26	1.98
34414344--34414545	40	4.9	40	84	8	253	33	22	18	25	1.96
34414327--34414635	42	7.3	41	82	7	304	30	22	19	26	1.98
34414344--34414636	84	3.5	82	84	5	347	32	22	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34446196--34446247	21	2.6	19	77	19	52	53	0	5	40	1.25
34446506--34446541	6	6.2	6	87	6	56	83	0	2	13	0.76
34446506--34446541	17	2.1	17	89	5	54	83	0	2	13	0.76
34450751--34450812	30	2.1	30	93	0	106	58	12	3	25	1.50
34450842--34450884	22	2.0	22	85	0	59	55	9	11	23	1.64
34461399--34461500	31	3.1	33	76	9	100	38	7	2	50	1.46
34466309--34466343	17	2.0	18	88	5	54	77	2	20	0	0.90
34466296--34466341	23	2.0	22	91	4	74	78	2	19	0	0.86
34467792--34468351	50	11.2	50	75	6	384	30	21	22	24	1.99
34467792--34468225	151	2.9	150	84	3	505	30	23	22	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210