Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  33  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11665911--11666400
241
2.0
242
99
0
964
49
11
11
27
1.73
11675715--11675768
27
2.0
26
82
10
65
64
3
1
29
1.21
11675715--11675784
28
2.5
28
78
13
65
64
7
1
27
1.28
11676104--11676128
5
5.0
5
100
0
50
40
60
0
0
0.97
11683891--11683933
17
2.6
16
81
7
50
62
6
0
30
1.21
11684192--11684227
14
2.4
16
90
9
58
52
0
5
41
1.24
11686162--11686198
9
4.1
9
92
0
65
29
10
13
45
1.77
11689503--11689714
108
2.0
108
99
0
415
24
17
34
23
1.96
11695639--11695698
21
3.0
21
82
4
79
16
23
18
41
1.90
11697091--11697137
19
2.5
18
77
16
51
36
2
0
61
1.08
11697098--11697133
6
5.8
6
87
6
54
30
2
0
66
1.06
11702859--11702909
11
4.7
11
87
4
68
25
29
3
41
1.73
11702855--11702909
21
2.6
22
82
5
69
25
27
3
43
1.71
11705229--11705372
49
2.9
49
97
0
270
42
2
9
46
1.47
11705612--11705651
16
2.5
16
87
0
62
52
37
0
10
1.35
11711002--11711046
17
2.6
17
78
0
63
48
0
0
51
1.00
11712488--11712539
24
2.1
25
82
10
63
25
0
5
69
1.10
11712510--11713078
284
2.0
285
99
0
1131
44
8
9
37
1.67
11723629--11723838
75
2.8
75
88
0
321
21
19
27
31
1.97
11728920--11728949
5
6.0
5
100
0
60
20
0
20
60
1.37
11728944--11728968
13
1.9
13
100
0
50
36
0
16
48
1.46
11730301--11730342
13
3.2
13
83
9
50
45
2
2
50
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11731383--11731614
115
2.0
116
98
0
448
56
10
2
30
1.46
11737569--11737614
14
3.4
13
90
6
65
52
2
0
45
1.13
11738797--11738887
39
2.3
39
86
5
119
37
2
5
54
1.36
11749704--11749737
17
2.0
17
88
0
50
64
8
0
26
1.22
11762710--11762761
24
2.2
24
82
6
61
23
36
25
15
1.93
11779977--11780108
25
5.4
25
69
16
89
16
28
19
35
1.94
11779977--11780144
49
3.4
49
80
7
153
18
27
18
35
1.94
11780088--11780175
25
3.5
25
75
3
79
22
25
19
32
1.97
11781702--11781899
99
2.0
99
96
0
369
39
19
16
24
1.91
11783293--11783346
26
2.2
25
86
6
74
20
22
16
40
1.91
11783303--11783351
26
1.9
26
91
4
82
18
20
20
40
1.91
11783707--11783747
16
2.7
16
82
17
52
46
0
14
39
1.45
11785630--11785712
42
2.0
42
85
0
112
21
33
26
18
1.96
11787396--11787437
21
2.0
21
86
9
59
54
4
2
38
1.34
11791824--11791958
40
3.4
39
78
7
139
31
25
17
25
1.97
11791824--11791959
41
3.5
40
77
7
134
31
25
17
25
1.97
11792376--11792419
21
2.2
20
87
4
61
6
13
4
75
1.17
11793470--11793558
29
3.0
29
73
16
83
40
19
10
30
1.84
11794310--11794348
13
2.9
13
88
3
51
66
0
5
28
1.12
11796703--11796741
18
2.2
18
86
4
53
38
10
17
33
1.84
11796797--11796842
19
2.4
19
92
0
74
30
15
8
45
1.76
11797298--11797330
17
1.9
17
100
0
66
30
21
6
42
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11797499--11797555
18
3.2
19
78
12
66
70
0
0
29
0.88
11832706--11832750
20
2.4
18
86
13
65
66
4
4
24
1.29
11840955--11840989
16
2.1
17
89
5
54
65
0
2
31
1.07
11843219--11843281
31
2.1
30
90
3
99
26
3
9
60
1.43
11843353--11843399
24
2.0
24
95
0
85
38
8
0
53
1.32
11843547--11843693
4
36.0
4
75
16
117
70
0
28
0
0.92
11843547--11843758
30
7.1
29
74
19
131
70
0
28
0
0.93
11843552--11843721
41
4.1
42
73
15
126
71
0
27
1
0.93
11843548--11843722
62
2.9
60
74
19
150
71
0
27
1
0.93
11843585--11843693
49
2.2
48
85
4
139
70
0
29
0
0.87
11843549--11843728
44
4.2
44
75
17
157
71
0
27
1
0.94
11844271--11844300
16
1.9
15
93
6
51
70
3
0
26
1.03
11845413--11845459
3
15.7
3
79
16
53
61
0
2
36
1.08
11845408--11845453
15
3.0
15
87
9
58
60
0
2
36
1.09
11845413--11845459
18
2.6
19
83
6
62
61
0
2
36
1.08
11845413--11845459
24
2.0
24
87
8
69
61
0
2
36
1.08
11845584--11845868
141
2.0
141
97
0
534
42
14
19
23
1.88
11846859--11847220
83
4.3
83
67
14
238
28
22
21
27
1.99
11846831--11847270
127
3.5
127
94
0
772
27
21
22
28
1.99
11847006--11847187
40
4.3
41
69
16
113
29
22
21
26
1.99
11857918--11858000
41
2.0
42
97
2
159
44
4
19
31
1.71
11859243--11859289
3
15.7
3
79
16
53
61
0
2
36
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11859238--11859283
15
3.0
15
87
9
58
60
0
2
36
1.09
11859243--11859289
18
2.6
19
83
6
62
61
0
2
36
1.08
11859243--11859289
24
2.0
24
87
8
69
61
0
2
36
1.08
11860343--11860390
25
1.9
25
100
0
96
33
8
2
56
1.41
11865827--11865867
3
13.7
3
100
0
82
68
31
0
0
0.90
11865866--11865900
3
11.3
3
87
6
52
62
5
0
31
1.18
11868519--11868589
29
2.5
28
88
8
101
39
9
1
49
1.45
11868637--11868714
27
2.9
27
86
3
104
28
25
29
16
1.97
11872656--11872851
38
5.2
38
85
7
231
1
31
0
66
1.01
11873016--11873087
27
2.6
27
89
8
110
47
1
8
43
1.42
11882624--11882718
45
2.2
42
88
7
136
26
5
4
64
1.33
11911476--11911510
5
7.0
5
90
9
54
0
17
2
80
0.84
11931761--11931849
42
2.1
42
97
0
169
17
32
25
23
1.97
11933855--11933945
22
4.0
23
84
11
107
37
20
26
15
1.93
11933901--11933958
25
2.3
25
87
0
80
36
22
24
17
1.95
11936072--11936152
39
2.0
40
95
2
146
30
19
8
40
1.82
11941032--11941112
22
3.5
22
81
5
90
35
19
28
16
1.93
11941033--11941159
25
5.3
24
83
6
118
37
19
25
17
1.93
11941725--11941780
9
6.1
9
78
12
60
42
28
8
19
1.81
11942718--11942785
5
13.8
5
96
3
129
58
0
0
41
0.98
11947142--11947172
14
2.2
14
94
0
53
51
6
6
35
1.53
11947169--11947375
80
2.7
78
77
7
199
35
3
16
44
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11947718--11947864
41
3.6
41
86
5
217
27
21
21
29
1.98
11948120--11948232
56
2.0
56
100
0
226
31
3
19
45
1.67
11951276--11951340
25
2.7
24
71
4
58
16
27
16
38
1.91
11951276--11951353
24
3.2
24
70
13
61
16
28
19
35
1.93
11951425--11951493
27
2.6
27
97
0
129
23
23
18
34
1.96
11951414--11951562
27
5.8
26
78
9
121
16
24
22
35
1.95
11951527--11951589
25
2.6
25
77
10
67
17
28
20
33
1.95
11951476--11951589
49
2.3
49
80
7
124
16
27
21
34
1.95
11953136--11953190
25
2.2
26
90
6
87
25
20
30
23
1.98
11953136--11953207
25
2.9
25
84
12
78
26
19
29
25
1.99
11953170--11953314
25
5.9
25
73
10
93
36
20
24
17
1.94
11953202--11953320
50
2.4
50
83
6
136
41
21
21
15
1.90
11961301--11961325
12
2.1
12
100
0
50
72
0
0
28
0.86
11963702--11963732
16
1.9
16
93
0
53
54
6
0
38
1.26
11969485--11969519
17
2.2
17
90
10
56
22
0
5
71
1.07
11971397--11971472
29
2.5
30
81
10
75
34
1
3
60
1.23
11977042--11977389
173
2.0
174
99
0
689
42
10
7
39
1.68
11977904--11977932
6
4.8
6
100
0
58
17
0
31
51
1.45
11981955--11981991
2
18.5
2
100
0
74
51
0
48
0
1.00
11982466--11982490
3
8.3
3
100
0
50
68
0
32
0
0.90
11989307--11989368
30
2.0
30
84
3
79
51
3
6
38
1.44
11995688--11995953
124
2.1
124
88
1
399
30
22
16
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12012260--12012321
30
2.0
30
84
3
79
51
3
6
38
1.44
12012520--12012544
10
2.5
10
100
0
50
40
0
0
60
0.97
12015892--12015961
22
3.2
22
93
0
122
31
30
0
38
1.58
12015911--12016013
52
2.0
51
84
5
136
33
31
0
35
1.58
12016046--12016102
29
1.9
30
85
3
80
33
0
1
64
1.04
12016046--12016110
30
2.2
30
83
5
78
33
0
1
64
1.03
12017602--12017636
18
1.9
18
88
0
52
28
34
8
28
1.87
12018101--12018170
29
2.4
29
92
0
122
44
22
2
30
1.67
12022461--12022615
29
5.6
28
82
11
178
44
23
0
31
1.58
12022534--12022599
23
2.9
23
88
0
87
43
24
0
31
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210