Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  111  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37392957--37393118
87
1.9
87
84
3
220
32
19
19
28
1.96
37392913--37393493
49
12.7
47
75
11
397
32
18
20
28
1.97
37392955--37393486
139
3.9
138
83
5
614
32
19
20
27
1.97
37392913--37393540
93
6.9
90
73
12
369
32
18
20
28
1.96
37393827--37393880
23
2.3
23
81
9
65
68
12
1
16
1.29
37395157--37395208
4
13.0
4
81
6
61
26
3
0
69
1.06
37395169--37395208
15
2.6
16
84
8
55
30
2
0
67
1.04
37400049--37400082
11
2.8
12
91
8
52
35
8
11
44
1.72
37412367--37412430
30
2.1
31
88
5
96
28
14
20
37
1.91
37414960--37415011
15
3.2
15
73
19
50
44
0
1
53
1.11
37416552--37417125
285
2.0
286
99
0
1141
40
5
10
43
1.62
37423810--37423892
33
2.5
33
75
7
87
28
20
14
36
1.92
37430557--37430599
16
2.5
17
77
11
52
62
0
13
23
1.31
37431417--37431529
23
4.7
23
81
8
136
48
5
25
20
1.70
37431435--37431486
24
2.2
24
85
0
68
57
5
21
15
1.58
37435621--37435823
100
2.0
101
99
0
399
41
2
6
48
1.45
37441476--37441571
26
3.8
26
77
2
79
23
11
8
56
1.62
37441794--37441837
22
2.0
23
86
4
63
50
6
0
43
1.29
37444250--37444296
24
2.0
24
100
0
94
51
4
12
31
1.59
37449599--37449747
44
3.4
44
77
6
158
28
24
16
30
1.97
37449686--37449831
75
1.9
75
86
2
204
32
20
18
28
1.96
37449763--37450338
44
12.7
44
75
13
420
29
19
17
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37449807--37449987
51
3.7
51
74
13
189
29
19
16
35
1.93
37449761--37450477
44
15.7
45
72
13
389
29
18
17
34
1.94
37449934--37450338
134
3.0
133
82
3
386
29
19
17
34
1.94
37449761--37450474
89
7.8
89
77
9
451
29
18
17
34
1.94
37449951--37450476
184
2.9
178
81
7
530
29
18
17
34
1.94
37451772--37451801
15
2.0
15
100
0
60
40
26
6
26
1.81
37456297--37456431
49
2.8
49
91
0
207
27
14
25
32
1.94
37462653--37462677
11
2.3
11
100
0
50
84
0
8
8
0.79
37465549--37465581
2
16.5
2
100
0
66
51
0
0
48
1.00
37474743--37474802
31
1.9
31
82
0
75
41
10
13
35
1.78
37483458--37483594
69
2.0
71
81
11
167
25
14
5
54
1.60
37487515--37487567
19
2.8
19
83
13
65
30
20
5
43
1.75
37493813--37493846
10
3.4
10
83
0
50
44
26
17
11
1.83
37493808--37493846
20
2.0
20
94
0
69
46
23
17
12
1.83
37497107--37497758
44
14.6
45
73
9
356
34
16
18
30
1.94
37497593--37497690
51
1.9
51
87
0
142
38
18
13
29
1.89
37515501--37515589
31
3.0
30
80
4
99
33
12
14
39
1.84
37515733--37515813
29
2.7
30
84
5
101
44
13
8
33
1.74
37521226--37521250
7
3.6
7
100
0
50
88
0
12
0
0.53
37522009--37522047
16
2.3
18
86
8
55
33
2
5
58
1.33
37522127--37522178
24
2.2
23
86
3
68
34
5
9
50
1.59
37522410--37522444
18
2.0
17
88
5
52
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37536959--37536988
9
3.4
9
90
9
53
63
0
0
36
0.95
37536953--37537075
55
2.2
55
84
5
151
51
5
2
40
1.39
37537015--37537208
93
2.1
93
92
0
316
56
4
3
35
1.36
37537571--37537614
18
2.4
18
88
0
70
43
9
27
20
1.82
37540316--37540349
15
2.2
16
89
5
52
55
0
0
44
0.99
37541739--37541769
14
2.2
14
94
0
53
38
0
12
48
1.42
37545997--37546037
15
2.8
14
85
7
55
21
2
2
73
1.07
37547627--37547665
5
7.6
5
83
16
53
17
0
5
76
0.96
37553213--37553247
14
2.6
14
90
4
54
42
5
0
51
1.25
37554602--37555407
403
2.0
403
100
0
1612
28
19
23
28
1.98
37557553--37557582
16
1.9
16
93
6
53
13
0
6
80
0.91
37561429--37561473
6
7.5
6
84
0
63
17
2
2
77
0.97
37566643--37566714
30
2.3
30
85
9
99
27
33
0
38
1.57
37568400--37568594
93
2.1
93
93
1
329
54
5
3
36
1.40
37568737--37568793
24
2.4
24
85
5
71
17
19
38
24
1.93
37568935--37568977
18
2.4
18
80
0
50
48
6
25
18
1.73
37573566--37573612
11
4.2
11
86
2
58
48
4
25
21
1.68
37575245--37575275
14
2.2
14
94
0
53
38
0
12
48
1.42
37581368--37581398
14
2.2
14
94
0
53
38
0
12
48
1.42
37582214--37582239
9
2.9
9
100
0
52
30
46
11
11
1.76
37582467--37582770
147
2.1
148
96
2
558
44
12
9
33
1.75
37582806--37582839
15
2.2
16
89
5
52
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37585187--37585217
14
2.2
14
94
0
53
38
0
12
48
1.42
37586033--37586058
9
2.9
9
100
0
52
30
46
11
11
1.76
37586478--37586511
15
2.2
16
89
5
52
55
0
0
44
0.99
37590193--37590231
16
2.3
18
91
8
64
35
0
5
58
1.20
37591278--37591344
26
2.6
27
83
4
84
37
23
20
17
1.94
37591507--37591713
27
7.7
27
81
3
247
17
21
19
41
1.91
37592585--37592618
17
2.0
17
88
0
50
58
0
0
41
0.98
37592895--37592925
14
2.2
14
100
0
62
38
6
0
54
1.26
37596677--37596710
15
2.2
16
89
5
52
55
0
0
44
0.99
37604433--37604466
15
2.2
16
89
5
52
55
0
0
44
0.99
37605841--37605871
14
2.2
14
94
0
53
38
0
12
48
1.42
37607349--37607437
27
3.3
27
80
3
108
40
19
19
21
1.92
37607606--37607682
26
2.9
26
82
1
82
25
23
16
33
1.96
37608565--37608614
24
2.1
24
82
14
59
12
0
10
78
0.98
37614030--37614075
20
2.3
20
85
7
58
30
6
2
60
1.34
37620089--37620138
22
2.3
22
85
0
64
22
26
18
34
1.96
37620099--37620143
22
2.0
22
86
0
63
24
26
15
33
1.95
37620595--37620673
3
26.7
3
97
2
151
65
0
0
34
0.93
37621676--37621707
2
16.0
2
100
0
64
50
0
0
50
1.00
37624196--37624238
18
2.4
17
82
17
52
48
2
0
48
1.14
37629790--37629830
21
1.9
22
90
5
66
48
7
14
29
1.71
37634531--37634574
19
2.2
20
88
4
63
50
15
15
18
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37636184--37636225
21
2.0
21
86
9
59
23
57
9
9
1.60
37637335--37637473
40
3.4
40
71
11
138
23
8
4
63
1.41
37637316--37637497
82
2.2
83
97
1
339
27
9
3
58
1.47
37644233--37644267
18
2.0
17
88
5
52
45
0
0
54
0.99
37644503--37644538
16
2.2
16
100
0
72
38
36
0
25
1.56
37653710--37654193
45
10.9
43
80
7
400
34
17
18
28
1.94
37653710--37654410
89
7.8
89
73
10
446
34
17
18
29
1.94
37653710--37654198
178
2.7
178
88
1
685
35
17
17
28
1.94
37654713--37654755
21
2.0
21
86
8
61
20
58
11
9
1.61
37655827--37655879
16
3.4
16
82
7
56
22
5
1
69
1.19
37655840--37655886
4
12.0
4
81
4
60
25
4
0
70
1.05
37655840--37655886
12
4.1
11
89
8
67
25
4
0
70
1.05
37655826--37655892
12
5.8
11
80
15
55
20
8
1
68
1.25
37660371--37660420
25
2.0
25
84
0
64
46
16
0
38
1.47
37661791--37661836
20
2.3
20
85
7
58
28
2
6
63
1.31
37667382--37667457
33
2.3
34
90
4
120
40
10
7
40
1.69
37667972--37668025
21
2.6
21
93
0
90
27
14
24
33
1.94
37670241--37670365
40
3.2
39
84
6
166
33
20
24
22
1.97
37670387--37670441
27
2.0
28
92
3
94
1
12
41
43
1.53
37670425--37670552
41
3.1
41
93
0
211
19
24
28
28
1.99
37672449--37673141
43
16.1
43
98
0
1334
18
20
34
26
1.96
37675511--37675559
26
1.9
25
83
4
62
34
6
2
57
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37684696--37684806
31
3.6
30
73
14
91
47
9
10
31
1.71
37685919--37686108
94
2.0
94
89
2
292
31
14
15
39
1.87
37686297--37686329
12
3.0
11
91
8
50
24
9
18
48
1.76
37690461--37690527
27
2.5
27
90
4
109
41
22
10
25
1.85
37690461--37690527
9
7.4
9
83
6
91
41
22
10
25
1.85
37690565--37690642
20
3.8
20
68
20
63
26
1
8
62
1.32
37690667--37690720
18
2.9
18
86
2
72
11
1
46
40
1.50
37690738--37690783
17
2.8
17
83
6
60
36
4
2
56
1.31
37691449--37691519
29
2.4
30
78
2
81
29
9
7
53
1.60
37691944--37692008
30
2.2
30
82
0
76
36
13
9
40
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210