genome.fa.s3.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  206  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68487961--68488243	141	2.0	142	99	0	559	48	12	14	24	1.78
68493597--68493670	22	3.3	22	64	32	57	47	13	25	13	1.79
68510731--68510766	19	1.9	18	88	5	54	11	33	5	50	1.61
68525915--68525939	4	6.2	4	100	0	50	0	24	0	76	0.80
68527363--68527420	27	2.2	26	84	3	71	32	18	22	25	1.97
68536827--68537402	287	2.0	287	91	1	931	24	14	28	32	1.94
68541067--68541115	25	2.0	24	84	8	62	20	2	2	75	1.00
68541692--68541752	29	2.0	30	87	6	88	45	13	9	31	1.75
68542225--68542380	83	1.9	82	84	5	199	48	7	8	35	1.62
68542818--68542867	26	2.0	25	84	4	64	42	0	6	52	1.26
68543725--68543791	18	3.6	19	69	9	50	29	5	1	62	1.28
68544226--68544282	29	2.0	29	89	6	89	22	40	0	36	1.55
68553107--68553158	21	2.5	21	83	0	68	15	25	19	40	1.90
68555242--68555266	12	2.1	12	100	0	50	24	28	24	24	2.00
68555424--68555504	9	8.9	9	85	8	101	40	29	8	20	1.83
68555650--68555679	13	2.3	13	100	0	60	16	0	43	40	1.48
68560601--68560658	21	2.8	21	81	0	71	20	24	15	39	1.91
68560571--68560673	42	2.5	42	80	0	116	18	22	15	43	1.87
68573121--68573286	90	1.8	90	100	0	332	23	23	10	42	1.85
68574217--68574262	21	2.1	23	84	8	60	39	17	8	34	1.80
68578828--68578880	26	2.0	26	81	7	61	22	11	5	60	1.52
68582791--68582815	10	2.5	10	100	0	50	56	0	8	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68582953--68583014	29	2.1	28	85	5	79	24	14	16	45	1.84
68583063--68583097	17	2.1	17	100	0	70	17	42	22	17	1.88
68586264--68586305	15	2.6	17	77	14	52	40	0	0	59	0.97
68588498--68588531	15	2.2	16	89	5	52	41	2	11	44	1.56
68591934--68591973	21	1.9	21	84	0	53	40	17	2	40	1.63
68592287--68592357	26	2.8	26	76	2	81	38	21	21	19	1.94
68594541--68594582	20	2.1	20	90	0	66	50	0	7	42	1.30
68597473--68597535	21	3.0	21	76	0	63	42	20	22	14	1.88
68597467--68597657	42	4.6	42	83	3	206	41	17	21	19	1.90
68597568--68597639	21	3.4	21	69	7	74	40	19	20	19	1.92
68597610--68597679	21	3.4	21	78	7	63	42	15	17	24	1.88
68613622--68613648	2	13.5	2	100	0	54	0	0	48	51	1.00
68614417--68614466	22	2.3	22	89	6	75	34	26	0	40	1.56
68615286--68615323	20	1.9	20	94	0	67	44	26	23	5	1.74
68621158--68622173	43	23.2	43	60	9	170	28	24	25	22	1.99
68621135--68622182	88	11.9	88	87	4	1476	28	24	24	22	2.00
68621201--68621340	45	3.2	45	65	8	133	30	22	25	21	1.99
68621168--68622182	441	2.3	438	93	2	1745	28	24	24	22	1.99
68622280--68622900	44	14.7	43	68	14	285	28	21	23	27	1.99
68622280--68622900	83	7.4	83	69	14	313	28	21	23	27	1.99
68622217--68622894	127	5.3	127	91	1	1063	28	21	22	26	1.99
68624112--68624142	12	2.7	11	95	5	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68627585--68627861	138	2.0	138	91	0	446	45	6	6	41	1.56
68627837--68627988	75	2.0	76	88	2	225	30	13	7	47	1.72
68632032--68632092	29	2.1	29	100	0	122	36	16	11	36	1.85
68637153--68637232	20	4.2	18	80	15	58	62	3	2	31	1.26
68637166--68637242	18	4.1	18	80	14	77	62	2	1	33	1.17
68637131--68637243	19	5.7	19	73	18	65	62	3	2	30	1.25
68645294--68645356	24	2.7	24	85	2	83	25	11	19	44	1.83
68645294--68645363	23	3.0	23	82	2	86	27	10	18	44	1.81
68646199--68646251	24	2.2	24	89	0	79	24	0	5	69	1.09
68646372--68646418	17	2.6	17	86	6	58	29	4	2	63	1.25
68649404--68649599	97	2.0	98	98	1	385	43	9	5	41	1.58
68652582--68652619	18	2.1	18	85	9	51	36	2	2	57	1.26
68658819--68658874	29	1.9	29	85	0	76	28	14	19	37	1.91
68658816--68658879	29	2.2	28	78	5	74	28	15	17	39	1.90
68659152--68659221	22	3.2	21	84	9	86	32	30	0	37	1.58
68659188--68659262	11	7.3	11	72	21	65	32	33	0	34	1.58
68659152--68659262	22	5.2	22	80	13	63	32	31	0	36	1.58
68659193--68659251	30	2.0	30	90	6	93	30	37	0	32	1.58
68659308--68659371	29	2.2	29	83	5	85	40	0	1	57	1.08
68659462--68659495	15	2.3	15	90	5	52	26	0	5	67	1.13
68663779--68663803	12	2.1	12	100	0	50	32	0	24	44	1.54
68667651--68667688	18	2.1	18	95	0	67	18	28	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68673397--68673440	7	6.4	7	92	5	54	25	0	6	68	1.14
68673546--68673578	14	2.4	14	94	0	57	18	57	6	18	1.60
68675093--68675117	8	3.1	8	100	0	50	64	0	12	24	1.27
68675192--68675243	25	2.1	25	96	0	95	40	3	9	46	1.55
68675342--68675371	8	3.9	8	91	8	53	86	0	0	13	0.57
68675448--68675488	18	2.3	18	100	0	82	19	14	26	39	1.90
68676349--68676373	11	2.3	11	100	0	50	56	16	0	28	1.41
68676309--68676492	91	2.0	92	97	2	352	47	10	5	36	1.61
68676440--68676464	11	2.3	11	100	0	50	56	16	0	28	1.41
68677175--68677209	6	5.8	6	96	0	61	65	34	0	0	0.93
68696393--68696461	34	2.0	35	97	2	131	43	18	5	31	1.74
68699423--68699447	10	2.5	10	100	0	50	32	0	0	68	0.90
68699549--68699578	14	2.1	15	93	6	53	16	0	6	76	0.99
68721111--68721144	15	2.3	15	90	5	52	67	5	0	26	1.13
68722929--68722962	3	11.3	3	100	0	68	0	32	0	67	0.91
68724916--68724973	29	2.0	29	83	6	73	39	0	6	53	1.28
68724931--68724977	23	2.0	23	84	8	60	38	0	4	57	1.18
68724962--68725007	3	15.7	3	78	13	51	34	0	0	65	0.93
68724966--68724998	14	2.4	14	90	5	50	33	0	0	66	0.92
68724959--68725007	18	2.8	18	84	9	66	36	0	0	63	0.95
68729569--68729629	26	2.3	26	81	13	72	27	0	3	68	1.05
68731603--68731637	17	2.1	17	100	0	70	54	22	17	5	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68733232--68733354	44	2.8	44	77	13	117	24	22	21	31	1.98
68733341--68734065	132	5.5	132	93	1	1220	24	23	20	31	1.98
68733651--68733967	44	7.2	44	63	9	153	24	23	21	30	1.99
68749380--68749435	28	2.0	28	100	0	112	42	17	3	35	1.67
68751831--68751879	25	2.0	25	88	8	73	48	16	16	18	1.81
68758579--68758655	29	2.7	29	100	0	154	49	9	11	29	1.70
68758579--68758678	29	3.4	29	90	5	121	49	10	13	28	1.73
68759338--68759408	29	2.4	29	78	4	79	35	7	9	47	1.64
68759360--68759418	29	2.0	30	86	3	84	30	3	11	54	1.53
68762945--68762978	15	2.3	15	90	5	52	17	0	29	52	1.45
68762960--68763004	23	2.0	23	86	0	63	20	0	22	57	1.40
68769796--68769828	6	5.5	6	100	0	66	15	0	0	84	0.61
68770897--68771217	109	3.0	108	86	6	461	30	15	18	34	1.92
68772476--68772518	14	3.1	14	89	0	68	27	0	2	69	1.00
68774678--68774891	99	2.2	100	92	4	353	37	3	8	50	1.49
68774720--68774930	99	2.1	99	82	6	250	41	2	9	46	1.50
68777256--68777543	126	2.3	126	93	1	497	29	20	16	33	1.94
68777769--68777921	44	3.3	44	66	24	123	38	16	0	43	1.53
68777586--68777973	97	4.1	97	87	6	537	39	15	1	43	1.56
68777542--68778016	188	2.5	182	76	15	440	39	16	1	42	1.57
68805181--68805251	33	2.2	33	85	5	92	40	11	11	36	1.77
68808056--68808299	120	2.1	118	83	7	298	31	20	7	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68809997--68810101	8	12.4	8	89	7	138	36	20	11	31	1.89
68810006--68810102	17	5.6	18	89	7	148	35	21	11	31	1.89
68810006--68810102	9	11.2	9	91	4	148	35	21	11	31	1.89
68809997--68810101	51	2.1	51	90	3	167	36	20	11	31	1.89
68810148--68810245	17	5.4	17	65	13	52	48	13	4	33	1.61
68810118--68810254	20	7.3	20	64	14	76	48	13	5	33	1.64
68810101--68810271	37	4.6	37	89	1	245	47	13	4	33	1.63
68810721--68810828	45	2.4	45	98	0	207	42	15	12	29	1.83
68810731--68810806	23	3.3	23	62	3	64	47	15	10	26	1.78
68810754--68810828	22	3.4	22	64	3	60	41	14	13	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210