genome.fa.s3.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  169  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56361398--56361906	255	2.0	255	79	2	547	19	31	31	17	1.96
56361980--56362139	43	3.7	42	79	8	171	19	28	33	18	1.96
56361980--56362139	86	1.9	86	84	2	214	19	28	33	18	1.96
56367744--56368033	85	3.4	85	85	2	368	19	30	32	18	1.96
56367744--56368508	43	18.0	42	67	9	354	18	30	31	19	1.96
56367890--56368164	128	2.1	127	82	2	334	19	30	31	18	1.95
56367969--56368706	85	8.7	85	76	4	565	18	29	32	19	1.95
56367805--56368246	213	2.1	213	84	0	569	19	30	31	18	1.95
56367923--56368416	128	3.9	128	73	8	317	18	29	32	19	1.96
56367746--56368333	298	2.0	298	85	1	802	18	30	31	19	1.96
56367805--56368322	213	2.4	213	81	3	542	18	30	32	18	1.95
56368044--56368618	254	2.3	255	85	3	766	18	29	32	19	1.96
56368564--56368742	43	4.2	43	79	7	202	15	26	36	20	1.93
56368563--56368727	86	1.9	86	86	4	235	16	27	35	20	1.94
56375485--56375619	43	3.1	43	88	0	189	15	26	36	21	1.93
56376022--56376222	42	4.7	43	80	1	181	17	26	33	21	1.96
56376363--56377327	42	22.5	43	67	9	333	18	28	31	20	1.97
56376454--56376549	44	2.2	43	81	5	104	18	31	30	19	1.96
56376381--56377169	128	6.1	128	74	8	387	19	28	32	20	1.96
56376498--56377540	85	12.2	85	74	8	654	18	29	33	19	1.95
56376342--56376880	219	2.5	214	82	4	600	18	28	31	20	1.97
56376466--56377288	128	6.4	127	72	9	492	18	29	32	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56377030--56377141	41	2.7	42	67	12	95	16	32	32	19	1.94
56377043--56377349	169	1.8	169	80	5	379	17	30	31	20	1.96
56376697--56377565	43	20.4	42	69	7	299	17	28	33	19	1.95
56376861--56377435	254	2.3	253	80	6	608	18	29	32	19	1.95
56380743--56380791	16	3.1	16	87	0	80	38	4	34	22	1.73
56393190--56393220	15	2.1	14	94	5	53	45	12	19	22	1.84
56398824--56398915	43	2.1	43	82	4	114	16	29	35	18	1.93
56399383--56399562	43	4.2	42	75	11	134	20	25	33	21	1.97
56399449--56399568	43	2.8	42	81	9	136	19	25	30	24	1.98
56400244--56400310	24	2.8	24	90	0	107	14	35	29	19	1.92
56400321--56401581	85	14.8	85	76	7	753	18	30	31	19	1.96
56400383--56401417	213	4.9	212	77	7	710	19	30	31	18	1.96
56400321--56401207	298	3.0	296	83	4	1085	19	30	31	18	1.96
56400391--56401548	298	3.9	296	77	8	1023	19	30	31	18	1.96
56401531--56401703	43	4.0	43	82	3	213	17	27	35	19	1.95
56409046--56409165	42	2.8	43	80	2	125	15	30	34	20	1.93
56409588--56409880	42	6.9	42	79	5	275	20	25	30	23	1.99
56409633--56409878	128	1.9	127	87	0	357	19	25	30	24	1.98
56415265--56417102	43	43.2	41	69	12	356	18	30	33	18	1.95
56415252--56417102	85	21.7	85	77	5	1226	18	30	33	18	1.95
56415252--56417102	298	6.2	298	84	4	1983	18	30	33	18	1.95
56415307--56417079	213	8.3	212	75	7	982	19	30	32	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56415939--56416222	128	2.2	127	81	1	309	19	30	32	17	1.95
56416232--56416478	128	1.9	128	85	3	336	17	31	34	17	1.93
56416800--56417036	128	1.8	129	82	4	309	17	29	35	16	1.92
56420830--56420914	43	2.0	43	86	4	118	17	25	35	21	1.95
56421386--56421721	43	7.9	42	77	7	302	19	26	31	22	1.97
56421384--56421721	85	4.0	85	77	7	335	19	26	31	22	1.97
56421382--56421721	128	2.7	126	83	3	403	19	26	31	22	1.97
56426977--56428289	43	30.9	43	72	9	807	19	30	31	18	1.96
56426977--56428408	85	16.8	84	75	7	715	19	30	31	18	1.96
56427038--56428203	128	9.1	127	72	10	849	19	31	31	18	1.96
56426977--56428034	213	5.0	211	77	7	951	19	31	31	18	1.96
56427006--56428444	43	33.8	42	72	10	455	19	30	31	18	1.96
56432019--56432076	24	2.4	24	97	0	107	31	1	15	51	1.53
56438014--56438117	50	2.0	52	81	7	124	25	35	18	20	1.95
56441481--56441509	15	1.9	15	100	0	58	55	13	24	6	1.63
56442485--56442523	19	2.0	20	95	5	71	12	30	15	41	1.85
56442528--56442566	20	2.0	20	94	0	69	25	25	15	33	1.95
56445094--56445231	25	5.6	25	69	19	92	32	23	22	21	1.98
56445160--56445241	24	3.4	24	75	9	67	36	24	19	19	1.95
56445139--56445237	49	2.0	49	88	0	144	34	24	22	19	1.96
56463629--56463678	20	2.5	20	80	0	64	32	6	36	26	1.81
56466594--56466642	21	2.5	19	81	15	55	10	2	34	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56467174--56467487	45	7.0	45	65	11	160	23	22	24	28	1.99
56467176--56468227	89	11.8	89	85	3	1012	26	24	20	28	1.99
56467557--56468227	355	1.9	355	92	0	1117	27	25	18	28	1.98
56468109--56468241	44	3.0	43	70	8	142	23	25	24	27	2.00
56467557--56468227	266	2.5	266	90	0	1002	27	25	18	28	1.98
56469490--56469516	3	9.0	3	100	0	54	33	0	0	66	0.92
56470485--56470544	21	2.9	19	79	13	66	11	13	1	73	1.18
56470533--56470561	8	3.8	8	90	9	51	10	0	10	79	0.94
56474727--56474824	29	3.5	28	75	8	83	58	3	7	31	1.41
56475137--56475193	9	6.3	9	78	8	53	57	1	8	31	1.39
56476738--56476813	18	4.5	17	73	12	59	31	0	2	65	1.06
56477319--56477395	30	2.5	31	77	12	97	38	15	18	27	1.91
56477746--56477900	77	2.0	78	98	1	303	38	7	12	41	1.71
56477757--56477876	39	3.1	39	60	20	88	42	6	11	39	1.68
56478307--56478371	26	2.4	26	89	5	94	61	1	6	30	1.29
56481462--56481499	19	2.0	19	100	0	76	42	15	10	31	1.81
56497694--56497727	7	4.9	7	86	13	52	70	0	14	14	1.17
56497697--56497727	13	2.3	13	94	5	53	74	0	12	12	1.08
56499008--56499100	31	3.2	30	65	20	79	29	22	23	24	1.99
56498991--56499100	57	1.9	57	96	0	202	30	20	24	25	1.99
56499101--56499321	42	5.1	42	68	14	180	28	21	25	24	1.99
56499048--56499486	87	5.0	87	95	1	745	27	22	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56499069--56499292	42	5.2	43	69	14	190	27	23	24	25	2.00
56501226--56501270	21	2.1	21	83	0	54	44	0	2	53	1.13
56504524--56504568	23	2.0	23	91	4	74	46	17	4	31	1.68
56504521--56504578	22	2.6	22	86	7	82	43	18	3	34	1.68
56509853--56509905	19	3.0	17	73	10	52	33	20	9	35	1.85
56509801--56509881	23	3.7	23	91	4	123	40	18	6	34	1.76
56517824--56517953	47	2.8	47	87	4	165	39	13	14	32	1.86
56518230--56518254	2	12.5	2	100	0	50	52	48	0	0	1.00
56519896--56519932	16	2.2	17	86	13	51	2	24	0	72	0.97
56519895--56519933	17	2.3	17	82	8	53	2	23	0	74	0.94
56527549--56527600	14	3.7	13	76	23	52	65	1	3	28	1.21
56527595--56527995	199	2.0	200	99	0	795	44	14	15	25	1.84
56529224--56529393	88	1.9	88	81	1	205	28	23	21	26	1.99
56529271--56529393	44	2.8	44	96	0	219	26	25	22	25	2.00
56529314--56529714	143	2.8	143	87	1	554	26	22	19	31	1.98
56530751--56530791	20	2.0	20	100	0	82	29	31	19	19	1.96
56536821--56536867	19	2.5	20	86	6	62	44	8	19	27	1.79
56538925--56539001	14	5.7	13	71	19	52	63	1	2	32	1.16
56540089--56540115	12	2.2	12	100	0	54	7	0	14	77	0.97
56540174--56543256	896	3.5	895	92	1	4805	37	16	9	35	1.82
56543818--56543867	17	2.7	19	78	12	59	18	6	4	72	1.22
56546162--56546226	16	4.1	16	95	0	103	36	3	35	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56546437--56547026	120	5.0	119	77	13	573	49	4	2	43	1.36
56546556--56546604	16	3.3	15	79	17	50	51	4	0	44	1.20
56546672--56546845	54	3.4	53	70	16	166	50	1	2	45	1.21
56546670--56546845	28	6.7	27	67	23	101	50	1	2	46	1.21
56546786--56546967	61	3.0	61	71	9	201	52	3	1	42	1.27
56558094--56558170	9	8.4	9	87	8	84	41	27	10	20	1.85
56558093--56558170	27	2.9	27	78	7	95	42	26	10	20	1.84
56558311--56558340	13	2.3	13	100	0	60	16	0	43	40	1.48
56562909--56566279	736	4.6	735	88	1	4942	37	15	19	27	1.92
56565647--56566919	643	2.0	642	89	0	1956	36	16	19	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210