genome.fa.s3.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  188  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62392775--62392804	13	2.3	13	94	0	51	36	30	10	23	1.87
62394909--62394997	40	2.2	40	84	6	108	35	21	21	21	1.96
62394946--62395049	40	2.6	41	75	3	104	40	23	18	18	1.91
62395036--62395382	113	3.1	113	90	1	534	27	23	22	27	1.99
62399374--62399441	3	23.0	3	90	3	93	63	0	36	0	0.95
62419115--62419612	48	10.0	51	83	7	612	14	7	48	29	1.71
62419115--62419604	99	4.9	99	89	3	684	14	7	48	29	1.71
62427020--62427143	43	2.8	45	78	11	132	37	15	18	28	1.91
62429239--62429278	17	2.4	17	87	4	55	25	0	2	72	0.97
62433510--62433539	13	2.4	13	94	5	53	63	6	0	30	1.20
62443334--62443368	16	2.1	17	89	5	54	42	0	11	45	1.40
62445690--62447445	49	35.9	49	99	0	3421	39	5	3	50	1.45
62447411--62447489	26	3.0	26	68	14	81	49	2	3	44	1.34
62447404--62447564	49	3.2	51	82	11	192	50	2	5	40	1.39
62450571--62450612	21	2.0	21	90	9	68	61	4	9	23	1.45
62451515--62451612	35	2.8	35	95	0	169	12	12	30	44	1.78
62462067--62462205	32	4.4	31	76	9	104	38	20	19	21	1.94
62462081--62462201	64	1.9	64	81	3	145	36	21	19	22	1.95
62462082--62462207	32	3.9	32	75	6	121	37	21	19	22	1.94
62462224--62462269	14	3.4	14	70	11	51	36	26	23	13	1.91
62462208--62462276	26	2.7	26	95	0	129	33	28	24	13	1.93
62462402--62462486	24	3.5	24	87	3	100	47	20	7	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62462511--62462720	27	7.9	27	78	4	192	21	20	21	35	1.96
62462512--62462704	53	3.6	53	78	2	172	20	21	23	34	1.97
62462511--62462716	80	2.6	79	78	7	227	21	20	22	35	1.96
62479029--62479374	172	2.0	173	99	0	685	38	18	6	36	1.76
62484725--62484779	27	2.0	27	100	0	110	41	14	14	29	1.85
62486744--62486888	73	2.0	73	89	2	220	42	13	19	25	1.87
62488236--62488262	3	9.0	3	100	0	54	0	0	66	33	0.92
62489490--62489554	28	2.4	28	97	2	123	43	9	0	47	1.35
62489614--62489665	27	1.9	27	92	0	86	32	21	32	13	1.92
62491287--62491355	31	2.3	30	89	2	102	56	2	0	40	1.14
62491707--62491740	16	2.1	17	88	5	52	29	20	0	50	1.49
62500479--62500509	16	1.9	16	93	0	53	35	3	9	51	1.51
62511736--62511769	10	3.4	10	91	0	50	70	2	0	26	1.01
62512745--62512774	15	2.0	15	100	0	60	20	40	0	40	1.52
62514984--62515030	20	2.3	20	75	7	51	53	8	8	29	1.61
62514999--62515051	10	5.0	10	82	13	61	58	5	1	33	1.32
62516025--62516054	15	2.0	15	100	0	60	20	40	0	40	1.52
62517399--62517439	20	2.0	20	100	0	82	24	9	19	46	1.80
62517976--62518022	17	2.6	18	86	10	69	65	0	0	34	0.93
62517986--62518015	8	3.6	8	91	8	51	66	0	0	33	0.92
62528499--62528545	10	4.6	10	85	12	51	61	4	0	34	1.15
62532209--62532258	20	2.7	19	77	20	52	52	0	4	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62532215--62532262	25	1.9	25	83	8	62	52	0	4	43	1.20
62532226--62532315	37	2.4	37	82	12	103	52	2	2	43	1.26
62535912--62536089	66	2.8	65	81	10	204	31	23	19	25	1.98
62540907--62540945	11	3.2	12	86	10	53	61	15	0	23	1.33
62542408--62542468	30	2.0	30	84	9	79	32	45	3	18	1.65
62543369--62543393	12	2.1	12	100	0	50	32	12	8	48	1.69
62543412--62543477	13	5.5	13	71	20	63	37	0	13	48	1.43
62543409--62543477	23	3.0	23	95	0	120	39	0	13	47	1.42
62551168--62551238	36	2.0	36	94	0	124	47	12	11	28	1.76
62553138--62553191	22	2.3	24	75	9	58	50	9	5	35	1.58
62558304--62558345	23	1.9	22	85	9	59	66	7	4	21	1.35
62560135--62560252	44	2.7	44	85	2	148	27	22	20	29	1.98
62560259--62560448	100	1.9	100	86	2	274	27	22	19	31	1.98
62560396--62560807	167	2.5	167	86	1	558	24	25	20	29	1.99
62560836--62561008	88	2.0	88	87	0	247	26	27	20	26	1.99
62573146--62573196	20	2.5	20	81	12	68	66	5	1	25	1.24
62576294--62576373	29	2.8	29	77	7	92	56	1	11	31	1.42
62579562--62579631	30	2.4	28	81	6	86	32	1	0	65	1.01
62581728--62581790	4	15.2	4	74	12	56	69	3	3	23	1.17
62581749--62581790	17	2.6	16	88	3	57	76	4	0	19	0.96
62584780--62584845	8	7.4	8	73	20	51	34	1	1	62	1.14
62584768--62584862	19	5.3	18	75	16	72	31	2	3	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62584768--62584845	9	8.6	9	71	18	54	33	2	1	62	1.17
62584781--62584845	17	3.7	17	77	16	53	35	1	1	61	1.15
62584780--62584862	26	3.1	28	78	14	86	32	1	3	62	1.20
62584900--62584944	21	2.1	21	84	8	56	35	4	6	53	1.47
62584913--62584953	21	2.0	21	90	0	64	39	2	7	51	1.43
62585780--62585871	46	2.0	46	95	0	166	33	11	14	40	1.82
62588807--62588840	18	1.9	17	88	5	50	32	2	2	61	1.26
62589449--62589517	28	2.5	27	75	11	68	60	2	1	34	1.20
62593160--62593185	11	2.4	11	100	0	52	30	19	26	23	1.98
62600121--62600388	43	6.1	43	86	4	367	29	29	18	22	1.97
62603913--62604407	148	3.3	148	94	1	814	31	15	13	40	1.85
62604868--62604931	14	4.5	14	71	11	58	37	40	0	21	1.54
62605172--62605224	7	7.4	7	81	12	63	45	37	0	16	1.48
62605175--62605224	15	3.5	15	78	13	52	48	36	0	16	1.46
62605276--62605939	113	5.9	114	91	1	998	25	25	22	25	2.00
62605276--62605921	227	2.9	226	91	2	1012	25	25	22	26	2.00
62605276--62605923	340	1.9	339	91	2	1059	25	25	22	26	2.00
62606328--62606381	22	2.5	22	87	6	74	66	1	24	7	1.27
62606339--62606378	11	3.6	11	79	0	53	67	0	22	10	1.20
62606339--62606383	22	2.0	22	95	0	81	66	0	24	8	1.20
62616669--62616946	27	10.4	27	78	8	239	41	18	16	23	1.90
62616782--62616828	24	2.0	24	91	0	76	31	23	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62616707--62616900	105	1.8	105	86	2	282	41	20	15	22	1.90
62617124--62617198	26	2.9	25	74	5	78	22	22	17	37	1.94
62617306--62617406	30	3.5	27	76	12	78	21	23	21	32	1.98
62617333--62617405	30	2.4	30	81	0	83	23	26	20	30	1.99
62624417--62624691	27	10.2	27	84	2	311	41	19	18	20	1.90
62624873--62624941	26	2.7	26	71	8	68	20	23	23	33	1.97
62625088--62625194	30	3.8	28	77	3	90	19	25	24	30	1.98
62625109--62625180	29	2.4	29	79	2	81	22	25	20	31	1.98
62632728--62632766	11	3.5	11	89	0	60	23	7	46	23	1.78
62644009--62644050	11	3.8	11	93	0	66	23	4	45	26	1.73
62654775--62654799	13	1.9	13	100	0	50	16	24	44	16	1.86
62656697--62656783	23	3.9	22	83	7	104	12	14	24	48	1.79
62662033--62662232	83	2.4	82	84	4	258	39	9	19	33	1.83
62662301--62662475	82	2.1	83	86	3	237	40	8	20	31	1.82
62662385--62662591	115	1.8	115	82	4	274	43	7	17	31	1.77
62673515--62673564	26	1.9	26	88	8	75	42	4	16	38	1.66
62675480--62675609	33	3.9	33	69	7	111	46	13	21	18	1.84
62675574--62675632	28	2.1	28	93	3	102	42	13	23	20	1.88
62677441--62677620	57	3.1	58	84	8	242	47	6	16	30	1.72
62684368--62684490	27	4.6	27	88	0	192	43	21	18	16	1.87
62684426--62684555	65	2.0	65	92	0	215	40	23	21	14	1.90
62684399--62684629	92	2.5	92	83	2	266	42	21	19	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62684491--62684575	27	3.1	27	79	3	109	42	21	20	16	1.89
62684807--62684883	26	3.0	26	86	0	109	15	24	24	35	1.94
62684988--62685047	28	2.1	28	90	0	93	26	26	20	26	1.99
62691881--62691910	13	2.3	13	94	0	51	33	3	13	50	1.58
62691997--62692182	50	3.7	50	84	7	252	26	22	31	19	1.98
62694329--62694610	27	10.4	27	89	3	381	42	17	20	19	1.89
62694872--62694967	28	3.4	28	87	7	140	25	26	21	27	2.00
62694872--62694960	30	3.0	30	91	3	137	25	26	21	25	1.99
62699926--62699960	16	2.3	15	95	5	61	62	14	0	22	1.31
62708932--62708961	15	2.0	15	93	0	51	20	10	0	70	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210