genome.fa.s3.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  49  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17285995--17286024	15	2.0	15	93	0	51	30	0	6	63	1.20
17291663--17291704	22	2.0	21	85	4	57	59	11	7	21	1.56
17293154--17293721	50	11.4	50	71	1	411	24	19	23	32	1.98
17293127--17293721	100	5.9	100	91	0	866	24	19	23	32	1.97
17294959--17295023	7	9.0	7	83	14	80	15	13	0	70	1.16
17294959--17295024	21	3.0	21	91	6	96	15	13	0	71	1.15
17295570--17295618	24	2.0	24	100	0	98	26	8	20	44	1.79
17300874--17300917	22	2.0	22	86	0	61	59	6	6	27	1.49
17305286--17305314	15	1.9	15	100	0	58	41	6	17	34	1.76
17305802--17305827	2	13.0	2	100	0	52	50	0	0	50	1.00
17313478--17313573	48	2.0	48	100	0	192	45	10	22	20	1.81
17316957--17316999	18	2.4	18	96	0	77	46	2	0	51	1.13
17322425--17322472	17	2.7	18	81	15	55	37	12	0	50	1.41
17324992--17325071	12	6.4	12	71	22	58	55	2	1	41	1.21
17326244--17326276	11	2.8	12	86	4	50	51	12	3	33	1.54
17326659--17326779	60	2.0	60	100	0	242	39	24	4	30	1.77
17327418--17327546	60	2.1	61	88	4	190	46	7	5	40	1.56
17340300--17340362	29	2.2	29	88	0	90	65	0	0	34	0.93
17340771--17340825	21	2.6	21	76	18	60	43	3	1	50	1.30
17346345--17346723	185	2.0	185	96	0	704	46	12	19	21	1.82
17347344--17347375	3	10.7	3	100	0	64	68	31	0	0	0.90
17348608--17348644	18	2.0	19	89	5	58	21	64	8	5	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17350440--17350471	17	1.9	16	93	6	55	53	0	0	46	1.00
17350766--17350853	34	2.6	33	77	10	88	38	30	5	25	1.79
17360932--17360982	23	2.2	23	92	0	84	37	21	19	21	1.95
17362367--17362410	23	1.9	23	90	0	70	43	9	4	43	1.56
17366916--17366986	5	14.2	5	84	0	88	42	19	1	36	1.60
17367211--17367254	7	6.3	7	84	10	63	45	15	0	38	1.47
17367210--17367253	22	2.0	22	91	8	72	45	18	0	36	1.49
17367211--17367266	29	2.0	28	89	3	85	44	17	3	33	1.66
17370325--17370410	43	2.0	43	95	0	154	30	13	13	41	1.84
17375761--17375813	26	2.0	27	85	10	74	71	1	3	22	1.12
17376633--17376700	34	2.0	34	100	0	136	29	17	11	41	1.85
17376722--17376800	13	6.5	13	73	16	71	48	12	1	37	1.50
17376722--17376800	36	2.2	36	90	0	131	48	12	1	37	1.50
17376759--17376809	23	2.2	23	92	0	84	50	9	0	39	1.35
17381195--17381350	27	5.8	27	85	0	204	18	17	21	42	1.89
17386926--17386984	23	2.5	24	81	10	70	72	1	1	23	1.02
17387824--17387866	13	3.5	13	75	18	56	48	13	0	37	1.43
17387824--17387873	23	2.2	23	96	3	93	50	12	0	38	1.40
17388430--17388478	18	2.7	19	81	9	66	40	14	0	44	1.45
17397127--17397744	309	2.0	309	100	0	1236	29	13	13	43	1.82
17398417--17398515	36	2.8	34	78	7	90	14	13	35	37	1.84
17413487--17413522	18	2.0	18	100	0	72	16	0	44	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17414980--17415200	27	8.2	27	76	5	173	42	19	15	22	1.89
17414980--17415200	54	4.1	53	78	8	196	42	19	15	22	1.89
17414966--17415200	81	2.9	79	83	8	258	42	20	15	21	1.88
17419306--17419396	37	2.5	37	80	1	94	15	9	29	45	1.78
17421803--17421835	17	1.9	17	88	11	50	15	6	0	78	0.93
17421930--17422240	115	2.8	115	79	7	302	26	11	21	40	1.87
17422340--17422407	5	13.4	5	75	20	61	22	1	0	76	0.87
17422346--17422402	12	4.9	12	80	8	73	22	1	0	75	0.90
17422470--17422536	21	3.2	21	95	0	116	23	23	20	31	1.98
17426797--17426832	7	5.4	7	93	6	58	13	13	0	72	1.13
17426794--17426832	13	3.0	13	85	14	62	15	15	0	69	1.20
17426794--17426834	6	6.5	6	94	5	64	17	17	0	65	1.27
17426818--17426943	51	2.5	51	83	8	141	27	19	5	46	1.72
17431984--17432020	6	6.2	6	100	0	74	0	35	32	32	1.58
17431987--17432027	18	2.3	18	91	0	64	2	34	26	36	1.70
17439672--17439712	21	2.0	21	85	0	55	48	7	14	29	1.71
17440413--17440733	160	2.0	161	99	0	635	41	11	8	38	1.72
17441911--17442000	39	2.3	40	86	7	130	26	27	26	18	1.98
17455836--17455874	16	2.4	16	95	0	69	30	5	35	28	1.79
17459370--17459395	12	2.2	12	100	0	52	76	7	0	15	0.99
17459620--17459648	2	14.5	2	100	0	58	51	48	0	0	1.00
17460680--17460806	47	2.6	47	78	10	123	37	7	31	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17460889--17460983	40	2.4	41	85	7	124	23	27	11	37	1.89
17471664--17471715	23	2.3	23	89	0	86	19	15	25	40	1.90
17471674--17471745	23	3.2	22	76	7	56	15	20	26	37	1.92
17482941--17482981	22	1.9	22	85	5	57	36	19	7	36	1.80
17484129--17484227	48	2.1	47	83	7	119	42	13	13	31	1.82
17486188--17486226	20	1.9	21	84	5	53	43	0	2	53	1.14
17490271--17490315	21	2.1	21	83	0	54	17	0	35	46	1.49
17490295--17490324	16	1.9	15	93	6	51	23	0	33	43	1.54
17490375--17490807	124	3.5	125	90	0	679	31	18	20	29	1.96
17492867--17492941	22	3.4	22	82	14	75	46	1	30	21	1.59
17492883--17492927	11	4.1	11	94	0	81	46	2	33	17	1.61
17492867--17492941	33	2.2	33	82	13	91	46	1	30	21	1.59
17493051--17493127	40	2.1	38	86	13	108	24	32	29	12	1.93
17495324--17495383	30	1.9	32	86	6	88	11	3	13	71	1.26
17495342--17495398	30	1.9	30	82	3	71	15	1	10	71	1.21
17495356--17495401	21	2.1	21	84	4	56	19	0	10	69	1.17
17510178--17510231	11	5.3	11	70	17	53	24	0	24	51	1.48
17510176--17510231	20	2.8	20	94	0	103	26	0	23	50	1.50
17518601--17518626	5	5.2	5	100	0	52	42	19	19	19	1.90
17520697--17520756	23	2.6	23	86	0	84	36	1	18	43	1.60
17524574--17524604	4	7.8	4	100	0	62	22	0	0	77	0.77
17530007--17530051	22	2.0	23	95	4	83	22	6	22	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17534401--17534475	23	3.3	23	81	1	98	38	0	16	45	1.47
17534408--17534473	13	5.6	12	68	21	50	36	0	18	45	1.49
17537544--17537580	9	4.1	9	92	0	65	45	13	10	29	1.77
17539109--17539140	16	2.0	16	93	0	55	21	0	12	65	1.25
17540269--17540374	27	3.9	28	71	20	91	60	2	1	34	1.22
17540268--17540356	10	8.6	10	70	16	58	61	2	2	33	1.20
17540391--17540424	16	2.1	16	100	0	68	52	23	5	17	1.66
17541745--17541802	26	2.2	26	84	0	71	36	15	8	39	1.78
17545080--17545117	19	2.0	19	85	10	51	39	21	10	28	1.86
17548883--17548923	21	1.9	22	85	14	59	26	34	7	31	1.84
17553413--17553625	106	2.0	107	99	0	419	38	3	6	51	1.46
17556049--17556081	3	11.0	3	100	0	66	66	0	0	33	0.92
17559970--17560000	16	1.9	16	93	0	53	41	12	0	45	1.42
17559952--17560055	55	1.9	55	89	0	163	43	10	5	40	1.63
17560025--17560056	16	2.0	16	93	0	55	37	15	6	40	1.73
17574811--17574864	24	2.4	22	81	12	56	46	0	1	51	1.11
17574850--17575140	145	2.0	146	99	0	575	36	5	9	48	1.59
17575001--17575052	26	2.1	25	82	10	63	32	0	3	63	1.12
17575001--17575052	25	2.0	26	82	10	63	32	0	3	63	1.12
17582759--17582791	1	33.0	1	100	0	66	100	0	0	0	0.00
17586993--17587018	6	4.3	6	100	0	52	0	15	19	65	1.27
17607417--17607449	17	1.9	17	88	11	50	33	6	27	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17615110--17615171	32	1.9	32	90	3	97	30	1	8	59	1.36
17617073--17617130	27	2.1	27	87	0	80	37	22	22	17	1.93
17619613--17619881	138	1.9	138	96	0	493	40	8	6	44	1.60
17621810--17621996	50	3.6	50	83	4	203	26	22	28	22	1.99
17632819--17632942	65	1.9	65	91	3	205	38	9	13	37	1.78
17645588--17645772	51	3.7	50	76	6	194	29	24	18	27	1.98
17645586--17645770	101	1.8	101	88	3	282	30	24	18	27	1.98
17651672--17651697	13	2.0	13	100	0	52	76	0	23	0	0.78
17657441--17657489	9	5.4	9	82	0	62	26	8	18	46	1.76
17665238--17665328	40	2.3	40	84	0	110	35	21	31	10	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210