genome.fa.s3.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  58  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20363095--20363131	18	2.0	19	85	15	51	32	18	5	43	1.73
20363305--20363474	45	3.9	44	75	14	147	29	25	17	27	1.98
20366043--20366114	24	3.0	23	76	10	63	22	26	15	36	1.93
20366304--20366338	19	1.9	18	88	11	54	40	11	20	28	1.87
20372640--20372826	91	2.1	91	97	0	356	46	16	22	13	1.83
20381458--20381505	18	2.8	17	78	6	53	35	0	0	64	0.94
20384740--20384780	19	2.2	19	100	0	82	31	0	19	48	1.49
20385273--20385423	77	2.0	77	81	0	176	35	25	13	24	1.93
20386682--20386759	35	2.3	34	80	8	79	28	24	14	33	1.94
20389530--20389564	18	1.9	18	94	0	61	37	14	0	48	1.44
20394766--20394922	41	3.8	40	79	3	152	34	26	13	26	1.93
20394766--20394939	40	4.3	40	78	4	154	34	25	13	27	1.93
20394762--20394922	81	2.0	83	85	4	220	33	26	13	26	1.94
20406204--20406256	28	1.9	28	84	3	72	35	7	13	43	1.72
20409602--20409673	36	2.0	36	94	0	126	43	11	8	37	1.71
20410897--20411100	73	2.8	72	87	1	282	33	25	17	23	1.96
20415496--20415525	15	2.0	15	93	0	51	76	0	13	10	1.01
20421582--20421610	3	9.7	3	100	0	58	31	0	0	68	0.89
20437375--20437443	24	2.8	25	89	6	115	56	0	0	43	0.99
20437816--20438082	132	2.0	133	96	2	493	38	11	10	39	1.77
20443114--20443312	99	2.0	100	99	1	391	39	9	8	43	1.66
20450426--20450453	8	3.5	8	100	0	56	85	0	0	14	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20450448--20450475	12	2.3	12	100	0	56	71	14	0	14	1.15
20452851--20452952	52	2.0	52	98	0	195	36	19	4	39	1.73
20452861--20452942	27	3.1	27	63	19	73	37	20	3	37	1.71
20454950--20455020	13	5.8	12	73	14	56	1	25	5	67	1.20
20454949--20455034	25	3.6	23	73	18	70	2	24	4	68	1.20
20454955--20454993	14	3.0	13	85	10	53	0	30	0	69	0.89
20465069--20465093	13	1.9	13	100	0	50	48	0	20	32	1.50
20466557--20466622	27	2.4	27	100	0	132	40	21	9	28	1.83
20467250--20467488	30	8.0	30	100	0	478	30	36	0	33	1.58
20469700--20470169	36	13.9	36	88	10	612	44	27	0	28	1.55
20470120--20470230	56	2.0	55	96	1	204	47	24	0	27	1.52
20469916--20470229	29	10.3	30	84	10	351	45	26	0	28	1.54
20475083--20475215	7	18.7	7	75	9	99	41	37	2	18	1.63
20475084--20475210	29	4.4	29	78	6	116	40	38	2	18	1.63
20475083--20475210	22	6.0	22	72	9	88	40	39	2	17	1.63
20475225--20475277	14	3.7	14	72	5	52	32	41	3	22	1.72
20475225--20475284	22	2.8	21	85	9	77	33	40	3	23	1.71
20475245--20475312	21	3.2	21	82	14	77	36	41	0	22	1.54
20475669--20475948	41	6.8	42	81	8	317	32	28	17	21	1.96
20479536--20479560	5	5.0	5	100	0	50	20	0	40	40	1.52
20490776--20491055	124	2.2	125	86	6	390	29	16	22	31	1.95
20496092--20496132	20	2.0	20	95	0	73	34	7	0	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20496254--20496391	4	32.0	4	76	17	93	68	0	31	0	0.90
20496245--20496391	38	3.7	39	81	12	158	67	0	32	0	0.91
20496341--20496405	31	2.0	33	91	5	107	66	0	33	0	0.92
20496262--20496417	37	4.3	36	74	13	140	67	0	32	0	0.91
20496253--20496415	74	2.3	71	86	9	221	67	0	32	0	0.91
20497139--20497193	27	2.0	27	96	0	101	41	14	34	9	1.77
20499931--20499957	11	2.5	11	100	0	54	37	7	14	40	1.74
20502220--20502264	18	2.5	18	88	0	72	15	48	6	28	1.70
20503104--20503132	3	9.7	3	100	0	58	68	31	0	0	0.89
20503260--20503300	11	3.8	11	83	6	57	0	31	0	68	0.90
20503263--20503302	21	2.0	20	90	5	62	0	32	0	67	0.91
20503263--20503302	10	3.9	10	86	3	53	0	32	0	67	0.91
20503399--20503507	27	4.0	27	95	0	182	13	29	28	28	1.94
20503791--20503887	23	4.3	23	73	12	92	46	9	4	40	1.55
20503814--20503919	45	2.4	45	96	0	194	47	7	5	39	1.56
20504739--20504766	2	14.0	2	100	0	56	50	0	0	50	1.00
20504942--20504979	18	2.1	18	90	0	58	36	2	21	39	1.67
20505013--20505109	23	4.3	23	73	12	92	46	9	4	40	1.55
20505036--20505141	45	2.4	45	96	0	194	47	7	5	39	1.56
20508448--20508494	17	2.8	17	93	0	76	34	14	10	40	1.81
20509143--20509238	39	2.5	37	78	6	95	25	27	25	22	2.00
20510261--20510288	4	7.0	4	100	0	56	0	25	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20510338--20510379	15	2.7	15	88	3	57	4	19	2	73	1.12
20510388--20510459	5	14.4	5	75	20	62	56	4	0	38	1.18
20510389--20510431	19	2.3	19	92	8	70	58	0	0	41	0.98
20510395--20510460	24	2.7	25	81	9	73	59	4	0	36	1.18
20512510--20512605	27	3.5	27	94	5	167	39	13	0	46	1.43
20512644--20512723	26	3.0	27	80	12	94	28	22	28	20	1.98
20513110--20513179	14	5.1	14	73	19	58	0	32	0	67	0.91
20513117--20513175	26	2.5	23	78	19	68	0	33	0	66	0.92
20513337--20513407	28	2.5	29	93	2	126	50	0	11	38	1.38
20518589--20518635	20	2.3	20	100	0	94	25	34	23	17	1.96
20519109--20519190	42	2.0	42	100	0	164	42	14	10	31	1.81
20521525--20522008	240	2.0	241	99	0	961	47	11	10	30	1.72
20522884--20522939	27	2.1	27	89	0	85	35	25	21	17	1.95
20523027--20523074	22	2.1	23	84	3	62	35	56	4	4	1.38
20523405--20523456	27	1.9	27	92	7	88	32	11	19	36	1.87
20524015--20524057	19	2.3	19	80	11	54	51	0	4	44	1.22
20529087--20529124	19	2.0	20	94	5	69	60	0	2	36	1.11
20529087--20529175	29	3.1	29	73	12	85	60	0	2	37	1.09
20529140--20529184	16	2.7	17	86	6	65	57	0	0	42	0.98
20533446--20533484	18	2.2	18	85	0	51	33	5	2	58	1.33
20533535--20533577	20	2.2	19	91	4	68	27	9	0	62	1.25
20533535--20533585	19	2.7	19	82	8	61	29	7	0	62	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534109--20534392	41	7.2	41	80	11	306	33	19	21	25	1.97
20534196--20534261	31	2.1	32	97	2	125	34	12	21	31	1.90
20534155--20534383	73	3.0	72	77	14	228	34	16	21	27	1.95
20534117--20534342	114	2.0	111	86	4	310	33	16	21	27	1.95
20534227--20534392	81	2.0	83	87	6	241	34	19	21	24	1.96
20548096--20548142	23	2.0	25	83	8	62	17	25	21	36	1.94
20555700--20555842	43	3.4	42	79	8	148	20	15	32	31	1.94
20555710--20555826	40	2.8	41	80	3	128	23	16	30	29	1.96
20555923--20555952	15	2.0	15	93	0	51	16	13	26	43	1.85
20564660--20564713	27	2.0	26	82	10	65	31	7	3	57	1.44
20573703--20573732	16	1.9	16	93	6	53	0	10	26	63	1.26
20576364--20576715	175	2.0	176	99	0	697	54	9	5	29	1.56
20578390--20578426	15	2.4	16	86	13	51	16	5	0	78	0.93
20582579--20582637	3	19.7	3	96	0	109	33	1	0	64	1.04
20584999--20585055	25	2.3	25	85	8	73	24	8	1	64	1.31
20585837--20585866	14	2.1	15	93	6	53	70	0	26	3	1.03
20586714--20586749	7	5.1	7	100	0	72	72	0	13	13	1.13
20588436--20588634	87	2.3	87	81	3	222	39	18	31	11	1.86
20588840--20588869	14	2.1	14	100	0	60	13	0	33	53	1.40
20588936--20589350	43	9.7	43	93	0	713	21	20	27	30	1.98
20589399--20589459	27	2.3	27	97	0	113	9	27	31	31	1.89
20590050--20590092	22	2.0	22	81	9	52	23	30	6	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20591666--20591729	17	3.8	17	93	2	103	26	0	17	56	1.41
20592952--20593183	46	5.0	46	93	0	392	37	7	25	30	1.84
20599004--20599137	65	2.1	63	81	13	152	45	14	11	28	1.80
20599198--20599231	17	1.9	18	94	5	61	41	5	14	38	1.70
20599655--20599683	7	4.1	7	100	0	58	13	0	0	86	0.58
20600613--20600668	4	14.0	4	85	10	71	21	1	3	73	1.08
20601631--20601663	12	2.8	12	86	4	50	30	3	0	66	1.06
20603078--20603132	11	5.1	11	72	18	53	56	0	1	41	1.10
20603068--20603175	31	3.5	30	80	9	119	54	4	3	37	1.39
20603079--20603166	11	8.4	11	67	14	51	54	0	4	40	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210