genome.fa.s3.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  204  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67907473--67907649	43	4.1	43	83	5	232	25	22	20	31	1.98
67907473--67907632	85	1.9	86	88	3	243	24	22	20	33	1.97
67911124--67911195	35	2.1	35	100	0	144	37	13	8	40	1.75
67916464--67916522	22	2.5	24	76	20	63	50	0	3	45	1.18
67919533--67919564	16	1.9	17	93	6	57	46	3	0	50	1.17
67922859--67923107	120	2.0	123	92	3	414	24	15	22	38	1.93
67926354--67926415	29	2.1	30	82	8	74	50	6	6	37	1.54
67935634--67935680	22	2.2	21	88	3	67	59	14	6	19	1.56
67937177--67937237	24	2.5	24	84	10	72	40	24	18	16	1.90
67937260--67937330	27	2.8	25	72	8	70	30	22	28	18	1.97
67943294--67943364	30	2.2	32	85	7	92	53	0	1	45	1.09
67951073--67951164	23	3.9	23	88	7	123	23	26	21	28	1.99
67951411--67951467	25	2.3	25	100	0	114	45	7	12	35	1.69
67953071--67953141	24	3.0	24	89	4	108	49	8	4	38	1.53
67954524--67954718	42	4.3	43	76	17	173	42	26	8	23	1.81
67954543--67954855	96	3.3	96	87	4	451	41	25	6	26	1.79
67954639--67954727	42	2.1	42	87	2	135	43	28	7	20	1.79
67955797--67955828	2	16.5	2	93	6	57	50	0	0	50	1.00
67957091--67957459	126	3.0	125	84	4	494	30	14	21	32	1.94
67960905--67961038	23	5.7	23	72	23	118	28	1	23	46	1.61
67960925--67961038	50	2.4	44	80	17	147	27	0	25	46	1.59
67960991--67961032	21	2.0	21	95	4	77	26	0	28	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67960942--67961038	50	1.9	51	91	2	160	25	1	27	45	1.60
67961862--67961886	7	3.6	7	100	0	50	60	12	0	28	1.32
67963913--67963942	7	4.4	7	95	4	53	76	10	13	0	1.01
67964714--67964763	25	2.0	25	92	0	82	4	36	4	56	1.37
67965845--67965869	5	5.0	5	100	0	50	80	0	20	0	0.72
67967847--67968101	44	5.9	44	87	7	353	21	22	14	42	1.88
67967847--67968083	86	2.8	86	94	1	395	21	21	14	42	1.88
67967847--67968101	130	2.0	129	88	4	379	21	22	14	42	1.88
67976481--67976534	8	6.9	8	74	19	51	51	0	1	46	1.11
67977561--67977700	40	3.5	40	72	12	119	28	18	24	28	1.98
67979546--67979575	14	2.1	15	93	6	53	40	10	0	50	1.36
67980035--67980096	31	2.0	32	87	3	90	29	16	27	27	1.97
67980440--67980491	27	1.9	27	96	0	95	30	21	13	34	1.92
67982991--67983016	11	2.4	11	100	0	52	38	0	19	42	1.51
67983363--67983440	33	2.3	35	78	10	90	39	0	1	58	1.06
67998617--67998667	19	2.7	19	79	11	61	37	3	3	54	1.37
68009791--68009838	24	2.0	24	100	0	96	54	16	0	29	1.43
68013384--68013414	2	15.5	2	100	0	62	51	0	0	48	1.00
68021854--68022045	94	2.0	95	98	1	377	17	14	15	52	1.76
68023099--68023124	13	2.0	13	100	0	52	53	23	0	23	1.46
68023194--68023234	13	3.2	13	76	16	50	46	12	0	41	1.41
68024734--68024802	10	6.6	10	75	21	54	1	17	5	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68031217--68031267	10	4.8	10	79	11	57	5	11	1	80	0.97
68031217--68031267	22	2.4	21	77	6	57	5	11	1	80	0.97
68031363--68031392	10	3.0	10	90	0	51	86	0	10	3	0.67
68033417--68033457	17	2.3	18	95	4	75	39	0	14	46	1.45
68037337--68037375	20	2.0	20	85	10	53	46	2	5	46	1.38
68046511--68046572	25	2.5	25	79	10	65	30	3	3	62	1.26
68052537--68052640	52	2.0	52	98	0	199	32	16	21	29	1.95
68054310--68054379	1	70.0	1	94	0	122	0	0	2	97	0.19
68054771--68054796	3	8.7	3	100	0	52	30	0	0	69	0.89
68067283--68067618	134	2.5	134	96	1	608	34	15	23	26	1.95
68067540--68067705	45	3.7	45	79	1	217	33	17	22	26	1.96
68067536--68067707	89	1.9	89	91	0	281	33	17	22	26	1.96
68067283--68067705	134	3.2	130	89	4	456	34	15	22	26	1.95
68069260--68069308	13	3.7	13	80	2	53	24	4	0	71	1.03
68069242--68069308	27	2.6	27	79	15	70	25	4	2	67	1.24
68069239--68069308	37	1.9	36	82	8	88	24	4	2	68	1.21
68069350--68069557	94	2.2	94	99	0	407	30	9	8	51	1.63
68070140--68070182	21	2.0	21	95	0	77	37	20	9	32	1.85
68077114--68077733	44	14.0	44	77	3	571	31	17	22	28	1.96
68077114--68077689	89	6.5	89	91	0	911	32	17	22	27	1.97
68079174--68079222	13	3.7	13	80	2	53	24	4	0	71	1.03
68079156--68079222	27	2.6	27	79	15	70	25	4	2	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68079153--68079222	37	1.9	36	82	8	88	24	4	2	68	1.21
68079264--68079542	94	3.0	94	98	1	535	30	9	6	53	1.60
68085754--68086011	98	2.6	99	82	10	287	46	15	6	31	1.72
68091435--68091522	27	3.2	26	63	12	68	47	12	7	31	1.70
68091534--68092000	126	3.8	120	84	8	568	28	0	26	45	1.54
68091673--68091721	25	2.0	23	92	7	80	24	0	32	42	1.55
68091534--68091968	89	4.8	90	83	9	535	28	0	25	45	1.54
68091534--68091968	30	14.3	30	82	8	549	28	0	25	45	1.54
68095809--68096072	30	9.9	30	75	24	295	38	0	32	28	1.57
68095839--68095886	22	2.2	22	96	0	87	39	0	35	25	1.56
68095802--68096093	52	5.6	52	100	0	584	38	0	32	28	1.57
68095891--68095938	22	2.2	22	96	0	87	39	0	35	25	1.56
68095943--68095990	22	2.2	22	96	0	87	39	0	35	25	1.56
68095995--68096042	22	2.2	22	96	0	87	39	0	35	25	1.56
68096047--68096093	22	2.1	22	96	0	85	40	0	34	25	1.56
68106595--68106634	20	2.0	20	85	0	53	32	12	12	42	1.80
68108038--68108064	12	2.2	12	100	0	54	51	0	7	40	1.30
68112382--68112433	21	2.5	21	78	9	61	32	30	3	32	1.76
68112491--68112519	14	2.0	15	93	6	51	37	20	0	41	1.53
68113517--68113572	24	2.3	25	78	12	71	32	12	17	37	1.88
68115185--68115209	9	2.8	9	100	0	50	44	0	0	56	0.99
68117079--68117166	41	2.1	41	80	0	95	20	23	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68117056--68117192	69	2.0	69	84	2	177	20	23	25	30	1.98
68117118--68117217	29	3.5	28	83	8	96	20	23	21	36	1.96
68117139--68117222	29	2.9	30	82	7	102	21	23	19	35	1.96
68121411--68121457	21	2.2	21	81	11	51	34	6	8	51	1.58
68122062--68122184	62	2.0	62	96	0	228	30	21	17	30	1.96
68122608--68122641	10	3.4	10	88	11	52	61	0	0	38	0.96
68123037--68123071	18	1.9	18	88	0	52	22	0	17	60	1.37
68129637--68129664	6	4.7	6	100	0	56	0	28	35	35	1.58
68130316--68130668	174	2.0	174	93	0	607	20	30	12	36	1.89
68130810--68131039	117	2.0	117	95	0	415	26	27	11	33	1.91
68134467--68135072	302	2.0	302	98	0	1158	35	18	16	29	1.92
68140758--68141173	69	6.1	69	75	4	358	38	24	15	21	1.92
68140758--68141219	137	3.4	137	78	5	432	37	24	16	21	1.93
68140770--68141165	136	2.9	138	79	5	426	38	24	15	20	1.92
68141241--68141443	58	3.5	57	83	4	246	35	18	8	37	1.82
68147533--68147562	12	2.5	12	94	0	51	36	10	0	53	1.35
68156433--68156466	17	1.9	18	88	5	52	50	35	5	8	1.58
68160889--68160990	42	2.4	42	90	0	150	15	22	16	45	1.85
68176701--68176777	22	3.5	22	71	7	66	55	5	12	25	1.58
68176873--68176924	22	2.4	21	84	9	61	53	7	23	15	1.67
68184937--68184981	16	2.6	18	86	13	67	31	0	0	68	0.89
68184939--68184990	27	2.0	25	85	10	70	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68190033--68190081	25	1.9	26	95	4	91	22	8	18	51	1.72
68190091--68190360	61	4.4	59	71	11	177	28	7	20	43	1.78
68190087--68190570	31	15.7	30	71	11	284	30	8	17	43	1.78
68190086--68190570	92	5.3	92	85	4	543	30	8	17	43	1.78
68190375--68190523	61	2.4	61	83	6	178	32	9	15	42	1.79
68194442--68194473	16	2.0	16	93	0	55	25	15	0	59	1.36
68194597--68194693	44	2.2	43	80	12	108	31	23	19	24	1.98
68208989--68209026	17	2.2	17	90	0	58	76	2	7	13	1.11
68210534--68210559	13	2.0	13	100	0	52	30	7	15	46	1.74
68211565--68211729	50	3.3	50	79	4	156	29	23	27	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210