genome.fa.s3.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  28  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9949128--9949171	23	1.9	23	85	0	61	25	18	15	40	1.90
9951791--9951929	73	1.9	74	90	1	226	34	16	20	28	1.94
9953396--9953430	18	1.9	18	100	0	70	80	2	0	17	0.84
9953391--9953438	24	2.0	24	84	8	62	79	4	2	14	0.98
9954793--9954844	16	3.2	16	94	0	86	28	0	32	38	1.57
9955185--9955236	16	3.2	16	94	0	86	28	0	32	38	1.57
9954587--9955371	392	2.0	392	100	0	1570	29	15	19	36	1.92
9958832--9958859	11	2.5	11	100	0	56	42	10	39	7	1.67
9961831--9961877	17	2.7	18	81	12	53	34	2	2	61	1.20
9962301--9962416	45	2.6	45	84	0	133	21	20	13	43	1.86
9970523--9970553	16	1.9	16	93	0	53	19	16	3	61	1.48
9970678--9970776	46	2.2	43	82	12	119	32	24	19	24	1.97
9974517--9974573	15	3.6	15	72	11	51	43	3	1	50	1.29
9981166--9981223	24	2.5	24	78	18	68	55	5	0	39	1.22
9982375--9982419	18	2.6	17	83	13	56	48	2	0	48	1.13
9999517--9999595	41	1.9	41	92	5	133	50	15	3	30	1.61
9999634--9999674	19	2.2	19	100	0	82	43	14	4	36	1.67
10010386--10010491	54	2.0	54	90	0	167	33	14	18	33	1.91
10027789--10027840	18	2.9	18	91	0	77	32	5	17	44	1.72
10030259--10030325	27	2.5	27	79	18	93	41	14	20	22	1.89
10034002--10034037	14	2.5	15	91	8	58	55	0	2	41	1.14
10041730--10041786	23	2.5	24	80	5	64	31	1	22	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10044856--10044894	20	1.9	21	94	5	71	25	5	15	53	1.62
10046232--10046304	23	3.2	23	80	0	74	24	26	13	35	1.93
10052191--10052237	24	2.0	24	83	4	60	21	14	14	48	1.80
10058432--10058562	28	4.7	28	75	8	108	36	16	25	20	1.94
10063167--10063216	6	8.2	6	93	2	73	16	22	0	62	1.33
10063412--10063452	13	3.1	13	85	3	55	63	0	4	31	1.15
10064864--10064972	23	4.7	23	76	13	91	19	2	35	42	1.66
10066022--10066053	16	2.0	16	100	0	64	31	6	18	43	1.75
10068453--10068522	27	2.6	27	83	0	95	35	15	27	21	1.94
10069791--10069890	41	2.5	41	90	1	148	39	13	25	23	1.90
10077526--10077626	41	2.5	41	88	1	141	38	11	24	24	1.89
10084184--10084209	13	2.0	13	100	0	52	38	23	7	30	1.83
10104529--10104555	2	13.5	2	100	0	54	48	0	0	51	1.00
10115062--10115156	49	1.9	49	82	4	120	23	21	27	28	1.99
10124992--10125050	27	2.2	27	96	3	111	42	15	6	35	1.73
10127071--10127119	14	3.6	14	78	15	57	22	4	0	73	1.00
10137703--10137814	55	2.0	55	96	0	206	26	8	9	55	1.60
10144183--10144283	36	2.8	36	83	0	112	32	22	5	38	1.79
10152384--10152433	26	2.0	25	84	4	64	46	2	0	52	1.12
10152995--10153039	21	2.2	21	88	4	65	4	13	15	66	1.39
10152993--10153034	21	2.0	21	95	0	75	4	11	19	64	1.44
10154401--10154467	14	4.9	14	73	10	57	37	29	7	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10158822--10158992	37	4.6	36	75	8	119	34	18	17	29	1.94
10158822--10159124	75	4.0	75	79	5	240	34	19	15	30	1.93
10158858--10159206	39	9.2	39	78	6	306	34	19	16	30	1.94
10164084--10164508	39	11.2	39	85	2	393	33	17	16	32	1.92
10165830--10165973	76	1.9	76	86	2	209	32	13	20	33	1.91
10177387--10177423	18	2.2	18	85	9	51	37	8	16	37	1.78
10195728--10195760	15	2.1	16	94	5	59	66	0	0	33	0.92
10205970--10206002	17	1.9	17	93	0	57	18	15	12	54	1.71
10206203--10206260	29	2.0	29	100	0	116	31	0	24	44	1.54
10210285--10210342	24	2.4	24	100	0	116	12	29	0	58	1.34
10213541--10213628	42	2.1	42	91	0	140	29	10	29	30	1.90
10220210--10220269	31	1.9	31	83	6	77	26	26	20	26	1.99
10226366--10226419	19	2.8	19	97	0	99	38	11	16	33	1.84
10227275--10227336	24	2.7	22	80	9	79	32	3	4	59	1.34
10227279--10227476	69	2.9	69	77	8	172	34	8	5	52	1.54
10227279--10227409	23	5.7	23	73	11	81	33	7	3	54	1.47
10229264--10229298	16	2.2	16	89	0	52	17	20	20	42	1.89
10231823--10231890	12	5.9	11	76	11	57	73	0	20	5	1.04
10231844--10231893	6	8.5	6	86	4	66	76	0	24	0	0.80
10231845--10231893	18	2.8	18	93	3	82	75	0	24	0	0.80
10234093--10234867	45	17.2	45	86	1	1027	28	16	23	30	1.96
10236440--10237813	45	30.8	45	82	6	1561	28	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10236700--10236733	17	2.0	17	94	0	59	23	14	23	38	1.92
10236655--10236778	62	2.0	62	90	3	196	25	16	25	32	1.96
10236610--10236819	107	2.0	107	88	1	314	26	15	26	31	1.95
10236565--10236868	152	2.0	152	90	1	475	27	16	25	31	1.96
10236520--10236913	197	2.0	197	89	2	603	27	16	25	30	1.97
10237567--10237801	35	6.1	35	82	9	173	26	18	24	30	1.98
10237524--10237823	80	3.8	80	74	17	280	28	17	23	30	1.97
10237482--10237800	160	2.0	160	90	1	496	27	18	23	30	1.98
10237869--10238075	44	4.7	44	71	7	141	27	21	26	24	1.99
10237817--10238091	132	2.1	132	95	0	496	28	22	24	25	1.99
10238570--10238614	21	2.0	23	83	8	58	37	4	13	44	1.64
10239421--10239513	23	4.0	23	72	1	78	33	6	3	56	1.41
10239420--10239649	24	9.9	24	68	13	106	34	6	4	53	1.47
10244078--10244142	34	1.9	34	83	0	85	24	0	23	52	1.48
10246083--10246140	29	2.0	29	100	0	116	31	31	6	31	1.84
10251891--10251919	2	14.5	2	100	0	58	48	0	51	0	1.00
10253324--10253427	38	2.7	38	89	0	154	32	25	13	28	1.93
10260689--10260722	7	4.7	7	85	7	50	47	38	0	14	1.45
10274058--10274089	13	2.5	13	94	0	55	59	12	9	18	1.59
10275270--10275305	3	12.0	3	100	0	72	66	0	33	0	0.92
10286843--10286886	17	2.6	17	81	0	52	56	9	2	31	1.43
10287028--10287071	21	2.0	22	91	4	72	31	27	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10291390--10291417	2	14.0	2	100	0	56	50	0	0	50	1.00
10302158--10302197	18	2.2	18	90	0	62	7	25	5	62	1.42
10311007--10311149	25	5.7	25	79	0	133	34	19	13	32	1.90
10311454--10311502	23	2.1	23	100	0	98	26	28	8	36	1.85
10313017--10313043	10	2.7	10	100	0	54	55	18	0	25	1.43
10313664--10313755	39	2.4	39	81	0	112	35	13	16	34	1.87
10313735--10314151	36	11.4	37	81	4	463	29	15	20	35	1.93
10313735--10314151	73	5.7	73	80	6	409	29	15	20	35	1.93
10313744--10314151	109	3.7	109	85	3	543	29	15	20	35	1.93
10317291--10317454	75	2.2	75	85	2	222	22	18	19	39	1.93
10318606--10318653	25	1.9	25	95	0	87	20	29	37	12	1.90
10320581--10320618	18	2.1	18	90	0	58	18	31	18	31	1.95
10321758--10321841	41	2.0	41	90	0	132	21	19	16	42	1.89
10323350--10323422	30	2.2	35	83	13	93	65	13	10	9	1.46
10331114--10331159	16	2.9	15	84	9	56	0	23	2	73	0.94
10331114--10331160	22	2.1	22	85	14	62	0	23	2	74	0.93
10347654--10347695	20	2.1	20	95	0	75	30	19	11	38	1.88
10350384--10350413	7	4.3	7	100	0	60	43	0	0	56	0.99
10351677--10351708	8	4.0	8	91	0	55	40	25	9	25	1.85
10351674--10351708	12	2.9	12	86	0	52	40	22	11	25	1.88
10351711--10351745	17	2.1	17	100	0	70	22	22	5	48	1.72
10358812--10358859	25	1.9	25	83	8	62	52	8	20	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10361754--10361838	37	2.3	37	80	8	102	24	25	7	42	1.80
10363180--10363219	19	2.2	18	90	4	62	35	2	5	57	1.34
10364550--10364596	22	2.1	22	100	0	94	59	17	4	19	1.53
10364601--10364640	7	5.7	7	90	0	62	50	12	10	27	1.72
10366550--10366598	24	2.0	24	100	0	98	40	16	22	20	1.91
10368675--10368700	5	5.2	5	100	0	52	19	0	0	80	0.71
10368940--10369001	9	6.9	9	82	10	56	22	30	0	46	1.52
10368969--10369006	18	2.1	19	90	5	60	21	23	2	52	1.59
10372665--10372696	2	16.0	2	100	0	64	50	0	0	50	1.00
10374065--10374108	22	1.9	24	86	9	65	40	13	4	40	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210