genome.fa.s3.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  157  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52538193--52538254	25	2.5	25	86	0	97	22	19	8	50	1.74
52538335--52538528	50	3.9	50	80	2	178	23	27	21	27	1.99
52544121--52544294	86	2.0	87	98	1	341	48	3	5	41	1.43
52544803--52544912	40	2.8	40	86	4	143	37	23	22	16	1.94
52544803--52544925	40	3.1	40	76	5	126	36	21	22	18	1.95
52544977--52545360	41	9.3	41	88	4	526	22	22	24	31	1.98
52545694--52545730	14	2.6	14	91	0	65	24	0	29	45	1.53
52545779--52545808	15	2.1	15	93	6	53	30	0	36	33	1.58
52545856--52546013	81	1.9	81	84	3	210	25	2	30	41	1.69
52545938--52546134	74	2.8	69	77	10	191	28	3	25	42	1.72
52545857--52546134	144	1.9	146	92	5	472	27	3	28	41	1.71
52549886--52549976	43	2.1	43	84	6	114	35	12	10	41	1.77
52550294--52550498	43	4.8	43	89	3	299	21	18	31	27	1.97
52550541--52550583	22	2.0	22	90	0	68	44	27	18	9	1.80
52552963--52553005	21	2.0	21	90	0	68	39	0	6	53	1.28
52553149--52553191	21	2.0	21	90	0	68	39	0	6	53	1.28
52552903--52553276	186	2.0	187	99	0	741	35	6	7	49	1.58
52559448--52559605	78	2.0	79	98	1	309	32	25	21	20	1.97
52563374--52563435	26	2.4	26	88	0	88	40	11	12	35	1.80
52570677--52570740	30	2.1	30	88	0	92	20	29	31	18	1.96
52580671--52580910	87	2.8	88	79	8	224	34	12	11	41	1.79
52580608--52581443	84	10.0	85	78	11	421	33	10	10	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52580922--52581446	84	6.3	83	86	4	698	32	9	9	49	1.66
52580758--52581446	251	2.8	247	84	8	828	33	9	9	47	1.69
52581394--52581496	50	2.1	50	94	0	179	24	14	8	52	1.70
52581602--52581718	59	2.0	59	81	0	135	25	10	13	50	1.73
52585854--52585889	16	2.2	16	100	0	72	41	5	16	36	1.72
52588793--52588832	20	2.0	20	100	0	80	45	0	25	30	1.54
52592409--52592488	39	2.1	39	100	0	160	60	12	12	15	1.60
52607297--52607548	25	10.2	25	70	11	101	34	17	27	21	1.95
52607400--52607518	49	2.4	51	78	13	133	33	19	30	16	1.94
52610644--52610731	45	2.0	45	93	0	149	32	20	19	27	1.97
52610742--52610928	51	3.7	51	82	3	243	32	27	16	24	1.96
52614114--52614342	69	3.3	69	86	4	320	42	23	8	25	1.82
52615787--52615864	38	2.1	38	90	0	120	30	6	25	37	1.81
52622186--52622231	24	1.9	24	81	0	56	21	26	0	52	1.47
52652548--52652855	45	6.8	45	79	5	293	26	19	14	39	1.90
52664940--52664981	21	2.0	22	95	4	77	45	0	45	9	1.36
52671357--52671411	28	2.0	28	96	0	101	34	18	5	41	1.73
52671593--52671751	50	3.1	50	80	5	147	23	28	19	28	1.98
52677817--52677979	83	2.0	83	92	0	272	33	18	11	37	1.86
52689656--52689760	52	2.0	52	94	0	183	29	24	11	34	1.91
52698401--52698440	21	1.9	21	89	0	62	35	15	32	17	1.91
52698940--52698976	19	2.0	20	84	10	51	40	21	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52703295--52703325	11	2.8	11	90	0	53	25	3	41	29	1.71
52703828--52703866	14	2.8	14	92	7	62	53	5	0	41	1.23
52706797--52706829	12	2.8	12	90	0	57	9	18	42	30	1.81
52715345--52715389	22	2.0	22	87	8	65	57	0	2	40	1.11
52715349--52715391	16	2.6	17	78	17	54	55	0	2	41	1.12
52731573--52731614	21	2.0	21	90	4	66	64	4	2	28	1.26
52736409--52736438	14	2.1	14	100	0	60	73	0	6	20	1.05
52737038--52737073	18	2.0	18	88	0	54	36	5	16	41	1.72
52737607--52737643	19	1.9	19	88	0	56	48	8	8	35	1.62
52738129--52738167	19	2.0	20	85	5	53	41	12	0	46	1.42
52738959--52739017	20	3.0	20	84	0	73	40	18	30	10	1.84
52744486--52744533	25	2.1	25	81	14	59	22	25	16	35	1.95
52744676--52744807	29	4.6	29	77	9	119	28	22	18	30	1.98
52746047--52746149	36	2.8	37	83	2	145	23	26	29	21	1.99
52746353--52746444	34	2.7	34	80	11	116	44	0	16	39	1.48
52746517--52747659	126	9.1	126	87	2	1597	37	17	17	28	1.92
52746515--52747659	376	3.0	376	89	2	1651	37	17	17	28	1.92
52750572--52750628	25	2.3	23	81	18	71	52	5	0	42	1.24
52751034--52751068	18	1.9	18	88	0	52	42	5	25	25	1.77
52752824--52752887	30	2.1	30	94	0	110	40	3	28	28	1.71
52753686--52753721	2	18.0	2	94	0	63	52	0	0	47	1.00
52754559--52754585	9	3.0	9	100	0	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52754880--52754925	21	2.2	20	80	3	56	60	6	2	30	1.34
52755311--52755379	28	2.5	28	81	9	79	37	0	4	57	1.18
52755238--52755379	9	15.3	9	68	17	53	40	0	2	55	1.19
52755894--52755957	29	2.2	30	82	2	76	23	6	1	68	1.21
52755910--52755959	23	2.3	21	83	13	57	24	4	0	72	1.02
52756056--52756084	13	2.2	13	100	0	58	65	0	0	34	0.93
52756053--52756117	29	2.2	29	81	13	80	66	0	1	32	1.01
52756083--52756138	20	2.8	21	81	8	71	62	0	1	35	1.06
52756076--52756146	20	3.7	19	75	12	56	64	0	1	33	1.02
52756531--52756596	28	2.4	27	82	12	80	22	6	4	66	1.32
52757453--52757496	19	2.3	19	88	0	61	56	27	2	13	1.49
52758748--52758836	45	2.0	45	100	0	178	40	13	11	34	1.80
52761923--52761981	29	2.0	29	90	0	91	49	0	13	37	1.43
52761987--52762023	18	2.1	18	94	0	65	35	10	8	45	1.69
52762336--52762394	29	2.0	29	93	0	100	49	0	11	38	1.40
52762401--52762436	9	4.0	9	85	0	54	30	8	13	47	1.73
52773586--52773654	27	2.6	27	88	4	95	28	13	20	37	1.90
52776621--52776655	16	2.1	16	89	5	52	37	0	34	28	1.58
52782846--52782910	32	2.0	32	93	0	112	41	10	16	30	1.83
52784713--52784740	14	2.0	14	100	0	56	35	0	28	35	1.58
52788643--52788682	20	2.0	21	85	5	55	52	0	15	32	1.43
52800852--52800892	21	2.1	20	86	13	59	58	0	21	19	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52817392--52817423	16	2.0	16	93	0	55	59	9	0	31	1.29
52819966--52820261	147	2.0	148	99	0	585	40	14	5	39	1.68
52822455--52822539	44	1.9	44	90	4	136	50	3	2	43	1.32
52822764--52822806	13	3.1	13	81	15	50	39	0	6	53	1.28
52823193--52823224	9	3.6	9	95	0	55	46	3	0	50	1.17
52828270--52828402	40	3.3	40	81	7	153	24	15	27	33	1.95
52828287--52828407	41	3.0	41	84	6	156	23	15	28	31	1.96
52828291--52828427	41	3.4	40	79	5	141	25	15	25	33	1.95
52829088--52829368	46	6.1	46	89	2	429	26	14	17	41	1.88
52835694--52835851	41	3.9	40	82	5	160	26	15	25	31	1.96
52835715--52835851	41	3.4	41	86	3	179	25	16	26	31	1.97
52836569--52836805	46	5.1	46	87	4	334	27	13	17	41	1.87
52847229--52847401	82	2.1	83	86	4	235	58	12	5	22	1.55
52847422--52847498	26	3.0	26	100	0	154	18	23	0	58	1.39
52847575--52847642	35	2.0	35	86	8	97	67	13	0	19	1.22
52848759--52848791	15	2.1	16	88	11	50	33	6	0	60	1.21
52851027--52851064	17	2.3	16	83	16	51	26	0	0	73	0.83
52852250--52852275	5	5.2	5	100	0	52	42	19	19	19	1.90
52857745--52857790	22	2.1	22	100	0	92	56	13	17	13	1.67
52859289--52859770	240	2.0	241	99	0	957	34	17	14	33	1.90
52860488--52860516	3	9.7	3	100	0	58	0	0	31	68	0.89
52860515--52860587	3	24.3	3	100	0	146	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52860584--52860639	6	9.3	6	96	0	103	16	1	16	66	1.35
52866121--52866685	3	188.3	3	100	0	1130	33	0	0	66	0.92
52866682--52866737	6	9.3	6	96	0	103	16	1	16	66	1.35
52871160--52871213	6	9.2	6	77	4	56	14	1	7	75	1.09
52873358--52873476	56	2.1	56	95	0	211	21	11	12	54	1.69
52874692--52874726	9	3.9	9	88	0	52	65	5	0	28	1.15
52874751--52874793	19	2.3	19	87	0	59	60	4	6	27	1.43
52874751--52874793	10	4.6	9	80	11	50	60	4	6	27	1.43
52874757--52874803	19	2.4	21	76	23	57	55	4	8	31	1.49
52874796--52874833	19	1.9	21	89	10	62	63	7	2	26	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210